Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5009 and PfGW456L13_5010 overlap by 1 nucleotides PfGW456L13_5010 and PfGW456L13_5011 are separated by 7 nucleotides PfGW456L13_5011 and PfGW456L13_5012 are separated by 43 nucleotides PfGW456L13_5012 and PfGW456L13_5013 overlap by 1 nucleotides
PfGW456L13_5009 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 5,585,469 to 5,586,443
_5009
PfGW456L13_5010 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 5,586,443 to 5,586,967
_5010
PfGW456L13_5011 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 5,586,975 to 5,587,547
_5011
PfGW456L13_5012 - LptA, protein essential for LPS transport across the periplasm, at 5,587,591 to 5,588,082
_5012
PfGW456L13_5013 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 5,588,082 to 5,588,807
_5013
Position (kb) 5586
5587
5588 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5586.974 kb on + strand at 5586.974 kb on + strand at 5586.974 kb on + strand at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.522 kb on + strand at 5587.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 5,586,974 + -3.2 5,586,974 + -2.0 5,586,974 + +0.3 5,587,413 + PfGW456L13_5011 0.76 -2.0 5,587,413 + PfGW456L13_5011 0.76 -0.5 5,587,413 + PfGW456L13_5011 0.76 -2.0 5,587,413 + PfGW456L13_5011 0.76 -2.6 5,587,522 + -5.0 5,587,522 + -2.4
Or see this region's nucleotide sequence