Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5006 and PfGW456L13_5007 overlap by 1 nucleotides PfGW456L13_5007 and PfGW456L13_5008 overlap by 1 nucleotides PfGW456L13_5008 and PfGW456L13_5009 are separated by 275 nucleotides
PfGW456L13_5006 - Uncharacterized ABC transporter, periplasmic component YrbD, at 5,583,120 to 5,583,587
_5006
PfGW456L13_5007 - Uncharacterized ABC transporter, permease component YrbE, at 5,583,587 to 5,584,384
_5007
PfGW456L13_5008 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 5,584,384 to 5,585,193
_5008
PfGW456L13_5009 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 5,585,469 to 5,586,443
_5009
Position (kb) 5584
5585
5586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5583.468 kb on - strand, within PfGW456L13_5006 at 5583.469 kb on + strand, within PfGW456L13_5006 at 5583.653 kb on + strand at 5583.653 kb on + strand at 5583.653 kb on + strand at 5583.653 kb on + strand at 5583.653 kb on + strand at 5584.547 kb on + strand, within PfGW456L13_5008 at 5584.591 kb on + strand, within PfGW456L13_5008 at 5584.691 kb on + strand, within PfGW456L13_5008 at 5585.103 kb on + strand, within PfGW456L13_5008 at 5585.252 kb on + strand at 5585.252 kb on + strand at 5585.252 kb on + strand at 5585.253 kb on - strand at 5585.253 kb on - strand at 5585.253 kb on - strand at 5585.253 kb on - strand at 5585.253 kb on - strand at 5585.284 kb on + strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.285 kb on - strand at 5585.287 kb on - strand at 5585.287 kb on - strand at 5585.361 kb on + strand at 5585.362 kb on - strand at 5585.402 kb on + strand at 5585.402 kb on + strand at 5585.423 kb on - strand at 5585.429 kb on + strand at 5585.429 kb on + strand at 5585.431 kb on + strand at 5585.456 kb on + strand at 5585.456 kb on + strand at 5585.456 kb on + strand at 5585.456 kb on + strand at 5585.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 5,583,468 - PfGW456L13_5006 0.74 -1.8 5,583,469 + PfGW456L13_5006 0.75 -2.0 5,583,653 + -1.0 5,583,653 + -1.5 5,583,653 + -0.8 5,583,653 + -2.4 5,583,653 + -2.4 5,584,547 + PfGW456L13_5008 0.20 +2.4 5,584,591 + PfGW456L13_5008 0.26 -0.6 5,584,691 + PfGW456L13_5008 0.38 -0.8 5,585,103 + PfGW456L13_5008 0.89 -2.9 5,585,252 + -2.0 5,585,252 + -2.2 5,585,252 + +1.2 5,585,253 - +0.0 5,585,253 - +0.0 5,585,253 - -0.9 5,585,253 - -1.4 5,585,253 - -0.2 5,585,284 + -1.1 5,585,285 - -1.8 5,585,285 - -0.3 5,585,285 - -1.2 5,585,285 - +0.1 5,585,285 - -0.8 5,585,285 - -2.8 5,585,285 - -1.2 5,585,285 - -1.1 5,585,285 - -0.8 5,585,285 - +0.1 5,585,285 - -0.3 5,585,285 - -0.4 5,585,285 - +0.0 5,585,285 - -1.2 5,585,285 - -1.9 5,585,285 - -1.0 5,585,285 - -1.0 5,585,287 - -0.2 5,585,287 - -0.5 5,585,361 + -0.2 5,585,362 - -3.7 5,585,402 + +0.2 5,585,402 + +1.0 5,585,423 - -0.2 5,585,429 + +0.4 5,585,429 + -0.9 5,585,431 + -0.8 5,585,456 + +0.0 5,585,456 + -0.1 5,585,456 + -2.0 5,585,456 + -1.1 5,585,456 + -1.0
Or see this region's nucleotide sequence