Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4629 and PfGW456L13_4630 are separated by 390 nucleotides PfGW456L13_4630 and PfGW456L13_4631 are separated by 4 nucleotides PfGW456L13_4631 and PfGW456L13_4632 are separated by 87 nucleotides PfGW456L13_4632 and PfGW456L13_4633 are separated by 372 nucleotides
PfGW456L13_4629 - Outer membrane protein A precursor, at 5,167,147 to 5,167,635
_4629
PfGW456L13_4630 - FIG00953202: hypothetical protein, at 5,168,026 to 5,168,523
_4630
PfGW456L13_4631 - UPF0225 protein YchJ, at 5,168,528 to 5,169,004
_4631
PfGW456L13_4632 - Conserved secreted protein, at 5,169,092 to 5,169,586
_4632
PfGW456L13_4633 - Isochorismatase (EC 3.3.2.1), at 5,169,959 to 5,170,516
_4633
Position (kb) 5168
5169
5170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5167.566 kb on + strand, within PfGW456L13_4629 at 5167.567 kb on - strand, within PfGW456L13_4629 at 5167.643 kb on + strand at 5167.679 kb on + strand at 5167.680 kb on - strand at 5167.799 kb on - strand at 5167.813 kb on + strand at 5167.813 kb on + strand at 5167.814 kb on - strand at 5167.814 kb on - strand at 5167.814 kb on - strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.828 kb on + strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.829 kb on - strand at 5167.838 kb on + strand at 5167.838 kb on + strand at 5167.838 kb on + strand at 5167.838 kb on + strand at 5167.839 kb on - strand at 5167.839 kb on - strand at 5167.839 kb on - strand at 5167.839 kb on - strand at 5167.862 kb on + strand at 5167.863 kb on - strand at 5167.878 kb on - strand at 5167.880 kb on + strand at 5167.880 kb on + strand at 5167.880 kb on + strand at 5167.880 kb on + strand at 5167.880 kb on + strand at 5167.880 kb on + strand at 5167.881 kb on - strand at 5167.895 kb on + strand at 5167.911 kb on + strand at 5167.911 kb on + strand at 5167.925 kb on + strand at 5167.933 kb on + strand at 5167.934 kb on - strand at 5167.936 kb on + strand at 5167.984 kb on + strand at 5167.985 kb on - strand at 5167.985 kb on - strand at 5167.996 kb on - strand at 5167.996 kb on - strand at 5167.996 kb on - strand at 5167.996 kb on - strand at 5168.037 kb on + strand at 5168.037 kb on + strand at 5168.038 kb on - strand at 5168.038 kb on - strand at 5168.086 kb on + strand, within PfGW456L13_4630 at 5168.430 kb on + strand, within PfGW456L13_4630 at 5168.430 kb on + strand, within PfGW456L13_4630 at 5168.431 kb on - strand, within PfGW456L13_4630 at 5168.434 kb on + strand, within PfGW456L13_4630 at 5168.434 kb on + strand, within PfGW456L13_4630 at 5168.434 kb on + strand, within PfGW456L13_4630 at 5168.434 kb on + strand, within PfGW456L13_4630 at 5168.434 kb on + strand, within PfGW456L13_4630 at 5168.434 kb on + strand, within PfGW456L13_4630 at 5168.435 kb on - strand, within PfGW456L13_4630 at 5168.449 kb on + strand, within PfGW456L13_4630 at 5168.450 kb on - strand, within PfGW456L13_4630 at 5168.450 kb on - strand, within PfGW456L13_4630 at 5168.450 kb on - strand, within PfGW456L13_4630 at 5168.450 kb on - strand, within PfGW456L13_4630 at 5168.450 kb on - strand, within PfGW456L13_4630 at 5168.512 kb on + strand at 5168.513 kb on - strand at 5168.513 kb on - strand at 5168.513 kb on - strand at 5168.513 kb on - strand at 5168.521 kb on + strand at 5168.521 kb on + strand at 5168.533 kb on + strand at 5168.533 kb on + strand at 5168.533 kb on + strand at 5168.533 kb on + strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.534 kb on - strand at 5168.589 kb on - strand, within PfGW456L13_4631 at 5168.589 kb on - strand, within PfGW456L13_4631 at 5168.589 kb on - strand, within PfGW456L13_4631 at 5168.640 kb on - strand, within PfGW456L13_4631 at 5168.648 kb on + strand, within PfGW456L13_4631 at 5168.648 kb on + strand, within PfGW456L13_4631 at 5168.649 kb on - strand, within PfGW456L13_4631 at 5168.669 kb on + strand, within PfGW456L13_4631 at 5168.746 kb on + strand, within PfGW456L13_4631 at 5168.746 kb on + strand, within PfGW456L13_4631 at 5168.746 kb on + strand, within PfGW456L13_4631 at 5168.746 kb on + strand, within PfGW456L13_4631 at 5168.746 kb on + strand, within PfGW456L13_4631 at 5168.747 kb on - strand, within PfGW456L13_4631 at 5168.877 kb on + strand, within PfGW456L13_4631 at 5168.877 kb on + strand, within PfGW456L13_4631 at 5168.878 kb on - strand, within PfGW456L13_4631 at 5168.878 kb on - strand, within PfGW456L13_4631 at 5168.898 kb on - strand, within PfGW456L13_4631 at 5168.916 kb on + strand, within PfGW456L13_4631 at 5168.916 kb on + strand, within PfGW456L13_4631 at 5168.916 kb on + strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.917 kb on - strand, within PfGW456L13_4631 at 5168.991 kb on - strand at 5169.002 kb on + strand at 5169.002 kb on + strand at 5169.002 kb on + strand at 5169.003 kb on - strand at 5169.003 kb on - strand at 5169.003 kb on - strand at 5169.003 kb on - strand at 5169.003 kb on - strand at 5169.003 kb on - strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.005 kb on + strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.006 kb on - strand at 5169.062 kb on + strand at 5169.062 kb on + strand at 5169.063 kb on - strand at 5169.063 kb on - strand at 5169.350 kb on + strand, within PfGW456L13_4632 at 5169.389 kb on + strand, within PfGW456L13_4632 at 5169.389 kb on + strand, within PfGW456L13_4632 at 5169.389 kb on + strand, within PfGW456L13_4632 at 5169.390 kb on - strand, within PfGW456L13_4632 at 5169.390 kb on - strand, within PfGW456L13_4632 at 5169.400 kb on - strand, within PfGW456L13_4632 at 5169.505 kb on + strand, within PfGW456L13_4632 at 5169.505 kb on + strand, within PfGW456L13_4632 at 5169.505 kb on + strand, within PfGW456L13_4632 at 5169.506 kb on - strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.507 kb on + strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.508 kb on - strand, within PfGW456L13_4632 at 5169.521 kb on + strand, within PfGW456L13_4632 at 5169.521 kb on + strand, within PfGW456L13_4632 at 5169.521 kb on + strand, within PfGW456L13_4632 at 5169.521 kb on + strand, within PfGW456L13_4632 at 5169.521 kb on + strand, within PfGW456L13_4632 at 5169.522 kb on - strand, within PfGW456L13_4632 at 5169.522 kb on - strand, within PfGW456L13_4632 at 5169.522 kb on - strand, within PfGW456L13_4632 at 5169.522 kb on - strand, within PfGW456L13_4632 at 5169.549 kb on + strand at 5169.550 kb on - strand at 5169.565 kb on - strand at 5169.917 kb on - strand at 5169.949 kb on + strand at 5169.974 kb on + strand at 5169.974 kb on + strand at 5169.974 kb on + strand at 5169.975 kb on - strand at 5169.975 kb on - strand at 5170.003 kb on - strand at 5170.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 5,167,566 + PfGW456L13_4629 0.86 -0.1 5,167,567 - PfGW456L13_4629 0.86 -0.2 5,167,643 + +0.6 5,167,679 + -0.1 5,167,680 - -0.3 5,167,799 - -0.2 5,167,813 + -0.2 5,167,813 + +0.6 5,167,814 - -0.5 5,167,814 - +0.2 5,167,814 - +0.2 5,167,828 + +0.9 5,167,828 + -0.6 5,167,828 + -0.4 5,167,828 + +0.0 5,167,828 + +1.5 5,167,828 + -0.3 5,167,828 + +1.1 5,167,828 + +0.2 5,167,829 - +0.3 5,167,829 - -0.4 5,167,829 - +0.5 5,167,829 - +0.6 5,167,829 - -1.5 5,167,829 - +1.0 5,167,829 - -0.1 5,167,829 - +0.4 5,167,829 - +0.2 5,167,829 - +0.0 5,167,829 - -0.5 5,167,829 - +1.0 5,167,829 - +0.1 5,167,838 + +0.5 5,167,838 + -0.8 5,167,838 + +0.1 5,167,838 + +0.0 5,167,839 - +0.2 5,167,839 - -0.3 5,167,839 - -0.1 5,167,839 - +0.9 5,167,862 + +0.4 5,167,863 - -0.8 5,167,878 - +0.7 5,167,880 + -0.1 5,167,880 + -0.0 5,167,880 + -0.2 5,167,880 + +1.7 5,167,880 + +1.8 5,167,880 + +0.2 5,167,881 - -0.5 5,167,895 + -1.3 5,167,911 + +0.1 5,167,911 + -0.5 5,167,925 + +0.7 5,167,933 + +0.1 5,167,934 - +0.5 5,167,936 + -2.6 5,167,984 + -1.2 5,167,985 - -1.5 5,167,985 - +1.1 5,167,996 - -0.7 5,167,996 - -0.0 5,167,996 - -0.3 5,167,996 - -0.3 5,168,037 + +0.1 5,168,037 + -0.1 5,168,038 - +0.4 5,168,038 - -0.1 5,168,086 + PfGW456L13_4630 0.12 -0.1 5,168,430 + PfGW456L13_4630 0.81 +0.2 5,168,430 + PfGW456L13_4630 0.81 +1.3 5,168,431 - PfGW456L13_4630 0.81 -0.7 5,168,434 + PfGW456L13_4630 0.82 +0.0 5,168,434 + PfGW456L13_4630 0.82 -1.6 5,168,434 + PfGW456L13_4630 0.82 -0.3 5,168,434 + PfGW456L13_4630 0.82 -0.5 5,168,434 + PfGW456L13_4630 0.82 -0.9 5,168,434 + PfGW456L13_4630 0.82 -0.7 5,168,435 - PfGW456L13_4630 0.82 +0.5 5,168,449 + PfGW456L13_4630 0.85 -0.5 5,168,450 - PfGW456L13_4630 0.85 +0.6 5,168,450 - PfGW456L13_4630 0.85 -0.3 5,168,450 - PfGW456L13_4630 0.85 -0.4 5,168,450 - PfGW456L13_4630 0.85 -0.2 5,168,450 - PfGW456L13_4630 0.85 +1.1 5,168,512 + +0.2 5,168,513 - -0.1 5,168,513 - +1.0 5,168,513 - +0.4 5,168,513 - -0.9 5,168,521 + -1.4 5,168,521 + +0.3 5,168,533 + -0.3 5,168,533 + +1.6 5,168,533 + -0.2 5,168,533 + -0.7 5,168,534 - -0.1 5,168,534 - +0.6 5,168,534 - -1.4 5,168,534 - +0.8 5,168,534 - -0.0 5,168,534 - -0.4 5,168,534 - +0.8 5,168,534 - -2.8 5,168,534 - -1.2 5,168,589 - PfGW456L13_4631 0.13 +1.0 5,168,589 - PfGW456L13_4631 0.13 -0.6 5,168,589 - PfGW456L13_4631 0.13 +0.0 5,168,640 - PfGW456L13_4631 0.23 -0.8 5,168,648 + PfGW456L13_4631 0.25 -0.1 5,168,648 + PfGW456L13_4631 0.25 -0.7 5,168,649 - PfGW456L13_4631 0.25 +0.2 5,168,669 + PfGW456L13_4631 0.30 -0.1 5,168,746 + PfGW456L13_4631 0.46 -0.2 5,168,746 + PfGW456L13_4631 0.46 -0.4 5,168,746 + PfGW456L13_4631 0.46 -0.5 5,168,746 + PfGW456L13_4631 0.46 -0.6 5,168,746 + PfGW456L13_4631 0.46 +0.7 5,168,747 - PfGW456L13_4631 0.46 +0.2 5,168,877 + PfGW456L13_4631 0.73 +0.9 5,168,877 + PfGW456L13_4631 0.73 -0.8 5,168,878 - PfGW456L13_4631 0.73 -0.9 5,168,878 - PfGW456L13_4631 0.73 -1.0 5,168,898 - PfGW456L13_4631 0.78 -1.8 5,168,916 + PfGW456L13_4631 0.81 -0.0 5,168,916 + PfGW456L13_4631 0.81 -0.3 5,168,916 + PfGW456L13_4631 0.81 -0.6 5,168,917 - PfGW456L13_4631 0.82 +1.4 5,168,917 - PfGW456L13_4631 0.82 +0.6 5,168,917 - PfGW456L13_4631 0.82 -0.1 5,168,917 - PfGW456L13_4631 0.82 +0.3 5,168,917 - PfGW456L13_4631 0.82 -0.3 5,168,917 - PfGW456L13_4631 0.82 -0.5 5,168,917 - PfGW456L13_4631 0.82 +0.1 5,168,991 - +0.6 5,169,002 + -0.4 5,169,002 + -0.6 5,169,002 + +0.0 5,169,003 - -0.3 5,169,003 - +2.3 5,169,003 - -0.5 5,169,003 - -1.6 5,169,003 - -0.9 5,169,003 - -0.5 5,169,005 + -0.2 5,169,005 + -0.3 5,169,005 + +0.5 5,169,005 + -0.8 5,169,005 + +1.2 5,169,005 + -0.4 5,169,005 + +0.1 5,169,005 + +0.5 5,169,005 + +0.9 5,169,005 + +0.3 5,169,006 - -0.8 5,169,006 - -1.0 5,169,006 - -0.3 5,169,006 - +1.0 5,169,006 - +0.2 5,169,006 - +0.8 5,169,006 - +0.1 5,169,006 - +0.4 5,169,062 + -1.1 5,169,062 + -1.2 5,169,063 - +0.2 5,169,063 - +0.8 5,169,350 + PfGW456L13_4632 0.52 -0.3 5,169,389 + PfGW456L13_4632 0.60 -0.9 5,169,389 + PfGW456L13_4632 0.60 -0.5 5,169,389 + PfGW456L13_4632 0.60 -0.5 5,169,390 - PfGW456L13_4632 0.60 -0.2 5,169,390 - PfGW456L13_4632 0.60 +0.4 5,169,400 - PfGW456L13_4632 0.62 +0.6 5,169,505 + PfGW456L13_4632 0.83 +1.4 5,169,505 + PfGW456L13_4632 0.83 +0.8 5,169,505 + PfGW456L13_4632 0.83 +0.3 5,169,506 - PfGW456L13_4632 0.84 +0.3 5,169,507 + PfGW456L13_4632 0.84 +0.7 5,169,507 + PfGW456L13_4632 0.84 +0.3 5,169,507 + PfGW456L13_4632 0.84 +2.4 5,169,507 + PfGW456L13_4632 0.84 +2.8 5,169,507 + PfGW456L13_4632 0.84 -0.2 5,169,507 + PfGW456L13_4632 0.84 -0.2 5,169,507 + +1.7 5,169,507 + PfGW456L13_4632 0.84 +0.1 5,169,507 + PfGW456L13_4632 0.84 +0.1 5,169,507 + PfGW456L13_4632 0.84 -0.2 5,169,507 + PfGW456L13_4632 0.84 -0.4 5,169,507 + PfGW456L13_4632 0.84 +0.6 5,169,507 + PfGW456L13_4632 0.84 +0.0 5,169,507 + PfGW456L13_4632 0.84 +0.8 5,169,507 + PfGW456L13_4632 0.84 +0.0 5,169,508 - PfGW456L13_4632 0.84 +0.2 5,169,508 - PfGW456L13_4632 0.84 +0.1 5,169,508 - PfGW456L13_4632 0.84 -0.7 5,169,508 - PfGW456L13_4632 0.84 -0.6 5,169,508 - PfGW456L13_4632 0.84 +0.3 5,169,508 - PfGW456L13_4632 0.84 -0.1 5,169,508 - PfGW456L13_4632 0.84 -0.0 5,169,508 - PfGW456L13_4632 0.84 -0.8 5,169,508 - PfGW456L13_4632 0.84 -0.4 5,169,508 - PfGW456L13_4632 0.84 -1.6 5,169,508 - PfGW456L13_4632 0.84 +0.6 5,169,508 - PfGW456L13_4632 0.84 +0.4 5,169,508 - PfGW456L13_4632 0.84 -0.2 5,169,508 - PfGW456L13_4632 0.84 +0.5 5,169,521 + PfGW456L13_4632 0.87 -0.9 5,169,521 + PfGW456L13_4632 0.87 +0.5 5,169,521 + PfGW456L13_4632 0.87 +0.4 5,169,521 + PfGW456L13_4632 0.87 +0.7 5,169,521 + PfGW456L13_4632 0.87 +1.6 5,169,522 - PfGW456L13_4632 0.87 +1.0 5,169,522 - PfGW456L13_4632 0.87 +0.0 5,169,522 - PfGW456L13_4632 0.87 -0.3 5,169,522 - PfGW456L13_4632 0.87 +0.3 5,169,549 + +0.4 5,169,550 - +0.4 5,169,565 - +0.8 5,169,917 - +0.2 5,169,949 + +0.1 5,169,974 + +0.3 5,169,974 + +0.4 5,169,974 + +0.5 5,169,975 - -0.6 5,169,975 - -0.2 5,170,003 - +1.4 5,170,003 - -0.1
Or see this region's nucleotide sequence