Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4623

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4622 and PfGW456L13_4623 are separated by 213 nucleotidesPfGW456L13_4623 and PfGW456L13_4624 are separated by 96 nucleotides PfGW456L13_4622 - Esterase A, at 5,158,360 to 5,159,505 _4622 PfGW456L13_4623 - hydrolase, putative, at 5,159,719 to 5,162,211 _4623 PfGW456L13_4624 - ATP-dependent helicase DinG/Rad3, at 5,162,308 to 5,164,452 _4624 Position (kb) 5159 5160 5161 5162 5163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5159.024 kb on + strand, within PfGW456L13_4622at 5159.024 kb on + strand, within PfGW456L13_4622at 5159.025 kb on - strand, within PfGW456L13_4622at 5159.025 kb on - strand, within PfGW456L13_4622at 5159.025 kb on - strand, within PfGW456L13_4622at 5159.025 kb on - strand, within PfGW456L13_4622at 5159.025 kb on - strand, within PfGW456L13_4622at 5159.111 kb on + strand, within PfGW456L13_4622at 5159.323 kb on - strand, within PfGW456L13_4622at 5159.323 kb on - strand, within PfGW456L13_4622at 5159.478 kb on + strandat 5159.478 kb on + strandat 5159.478 kb on + strandat 5159.478 kb on + strandat 5159.478 kb on + strandat 5159.479 kb on - strandat 5159.479 kb on - strandat 5159.486 kb on + strandat 5159.532 kb on - strandat 5159.532 kb on - strandat 5159.672 kb on + strandat 5159.690 kb on + strandat 5159.690 kb on + strandat 5159.691 kb on - strandat 5159.721 kb on - strandat 5159.721 kb on - strandat 5160.084 kb on + strand, within PfGW456L13_4623at 5160.084 kb on + strand, within PfGW456L13_4623at 5160.085 kb on - strand, within PfGW456L13_4623at 5160.085 kb on - strand, within PfGW456L13_4623at 5160.203 kb on + strand, within PfGW456L13_4623at 5160.203 kb on + strand, within PfGW456L13_4623at 5160.203 kb on + strand, within PfGW456L13_4623at 5160.203 kb on + strand, within PfGW456L13_4623at 5160.203 kb on + strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.204 kb on - strand, within PfGW456L13_4623at 5160.230 kb on + strand, within PfGW456L13_4623at 5160.289 kb on + strand, within PfGW456L13_4623at 5160.289 kb on + strand, within PfGW456L13_4623at 5160.290 kb on - strand, within PfGW456L13_4623at 5160.338 kb on + strand, within PfGW456L13_4623at 5160.338 kb on + strand, within PfGW456L13_4623at 5160.338 kb on + strand, within PfGW456L13_4623at 5160.339 kb on - strand, within PfGW456L13_4623at 5160.339 kb on - strand, within PfGW456L13_4623at 5160.339 kb on - strand, within PfGW456L13_4623at 5160.365 kb on + strand, within PfGW456L13_4623at 5160.365 kb on + strand, within PfGW456L13_4623at 5160.365 kb on + strand, within PfGW456L13_4623at 5160.365 kb on + strand, within PfGW456L13_4623at 5160.366 kb on - strand, within PfGW456L13_4623at 5160.366 kb on - strand, within PfGW456L13_4623at 5160.366 kb on - strand, within PfGW456L13_4623at 5160.366 kb on - strand, within PfGW456L13_4623at 5160.366 kb on - strand, within PfGW456L13_4623at 5160.366 kb on - strand, within PfGW456L13_4623at 5160.494 kb on + strand, within PfGW456L13_4623at 5160.494 kb on + strand, within PfGW456L13_4623at 5160.564 kb on - strand, within PfGW456L13_4623at 5160.629 kb on + strand, within PfGW456L13_4623at 5160.629 kb on + strand, within PfGW456L13_4623at 5160.629 kb on + strand, within PfGW456L13_4623at 5160.632 kb on + strandat 5160.633 kb on - strand, within PfGW456L13_4623at 5160.797 kb on + strand, within PfGW456L13_4623at 5160.797 kb on + strand, within PfGW456L13_4623at 5160.798 kb on - strand, within PfGW456L13_4623at 5160.883 kb on - strand, within PfGW456L13_4623at 5160.883 kb on - strand, within PfGW456L13_4623at 5160.883 kb on - strand, within PfGW456L13_4623at 5160.883 kb on - strand, within PfGW456L13_4623at 5161.012 kb on + strand, within PfGW456L13_4623at 5161.012 kb on + strand, within PfGW456L13_4623at 5161.013 kb on - strand, within PfGW456L13_4623at 5161.013 kb on - strand, within PfGW456L13_4623at 5161.118 kb on + strand, within PfGW456L13_4623at 5161.142 kb on + strand, within PfGW456L13_4623at 5161.142 kb on + strand, within PfGW456L13_4623at 5161.142 kb on + strand, within PfGW456L13_4623at 5161.143 kb on - strand, within PfGW456L13_4623at 5161.143 kb on - strand, within PfGW456L13_4623at 5161.143 kb on - strand, within PfGW456L13_4623at 5161.170 kb on - strand, within PfGW456L13_4623at 5161.170 kb on - strand, within PfGW456L13_4623at 5161.286 kb on + strand, within PfGW456L13_4623at 5161.286 kb on + strand, within PfGW456L13_4623at 5161.286 kb on + strand, within PfGW456L13_4623at 5161.286 kb on + strand, within PfGW456L13_4623at 5161.286 kb on + strand, within PfGW456L13_4623at 5161.287 kb on - strand, within PfGW456L13_4623at 5161.287 kb on - strand, within PfGW456L13_4623at 5161.287 kb on - strandat 5161.287 kb on - strand, within PfGW456L13_4623at 5161.287 kb on - strand, within PfGW456L13_4623at 5161.318 kb on - strand, within PfGW456L13_4623at 5161.361 kb on + strand, within PfGW456L13_4623at 5161.361 kb on + strand, within PfGW456L13_4623at 5161.362 kb on - strand, within PfGW456L13_4623at 5161.568 kb on + strand, within PfGW456L13_4623at 5161.569 kb on - strand, within PfGW456L13_4623at 5161.589 kb on + strand, within PfGW456L13_4623at 5161.590 kb on - strand, within PfGW456L13_4623at 5161.590 kb on - strand, within PfGW456L13_4623at 5161.590 kb on - strand, within PfGW456L13_4623at 5161.895 kb on + strand, within PfGW456L13_4623at 5161.895 kb on + strand, within PfGW456L13_4623at 5161.896 kb on - strand, within PfGW456L13_4623at 5161.896 kb on - strand, within PfGW456L13_4623at 5161.896 kb on - strand, within PfGW456L13_4623at 5161.896 kb on - strand, within PfGW456L13_4623at 5161.896 kb on - strand, within PfGW456L13_4623at 5161.896 kb on - strand, within PfGW456L13_4623at 5162.272 kb on + strandat 5162.272 kb on + strandat 5162.272 kb on + strandat 5162.272 kb on + strandat 5162.272 kb on + strandat 5162.272 kb on + strandat 5162.272 kb on + strandat 5162.273 kb on - strandat 5162.273 kb on - strandat 5162.273 kb on - strandat 5162.273 kb on - strandat 5162.273 kb on - strandat 5162.273 kb on - strandat 5162.360 kb on + strandat 5162.361 kb on - strandat 5162.491 kb on - strandat 5162.585 kb on + strand, within PfGW456L13_4624at 5162.586 kb on - strand, within PfGW456L13_4624at 5162.791 kb on - strand, within PfGW456L13_4624at 5163.023 kb on + strand, within PfGW456L13_4624at 5163.023 kb on + strand, within PfGW456L13_4624at 5163.023 kb on + strand, within PfGW456L13_4624at 5163.023 kb on + strand, within PfGW456L13_4624at 5163.024 kb on - strand, within PfGW456L13_4624

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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5,159,024 + PfGW456L13_4622 0.58 -1.2
5,159,024 + PfGW456L13_4622 0.58 +0.4
5,159,025 - PfGW456L13_4622 0.58 +1.1
5,159,025 - PfGW456L13_4622 0.58 +0.2
5,159,025 - PfGW456L13_4622 0.58 +0.3
5,159,025 - PfGW456L13_4622 0.58 -0.0
5,159,025 - PfGW456L13_4622 0.58 +0.7
5,159,111 + PfGW456L13_4622 0.66 -1.3
5,159,323 - PfGW456L13_4622 0.84 +0.7
5,159,323 - PfGW456L13_4622 0.84 -2.5
5,159,478 + -0.4
5,159,478 + -1.0
5,159,478 + +1.1
5,159,478 + -0.8
5,159,478 + -0.3
5,159,479 - +0.6
5,159,479 - -0.3
5,159,486 + -0.3
5,159,532 - +1.5
5,159,532 - +0.9
5,159,672 + +0.4
5,159,690 + +0.5
5,159,690 + -1.9
5,159,691 - -0.5
5,159,721 - +0.7
5,159,721 - +1.2
5,160,084 + PfGW456L13_4623 0.15 +0.3
5,160,084 + PfGW456L13_4623 0.15 -0.2
5,160,085 - PfGW456L13_4623 0.15 -0.1
5,160,085 - PfGW456L13_4623 0.15 +0.7
5,160,203 + PfGW456L13_4623 0.19 +0.2
5,160,203 + PfGW456L13_4623 0.19 +0.3
5,160,203 + PfGW456L13_4623 0.19 +0.2
5,160,203 + PfGW456L13_4623 0.19 +0.9
5,160,203 + PfGW456L13_4623 0.19 -0.4
5,160,204 - PfGW456L13_4623 0.19 -0.1
5,160,204 - PfGW456L13_4623 0.19 +0.9
5,160,204 - PfGW456L13_4623 0.19 +0.5
5,160,204 - PfGW456L13_4623 0.19 +1.9
5,160,204 - PfGW456L13_4623 0.19 +0.7
5,160,204 - PfGW456L13_4623 0.19 +1.4
5,160,204 - PfGW456L13_4623 0.19 +0.1
5,160,204 - PfGW456L13_4623 0.19 +1.5
5,160,204 - PfGW456L13_4623 0.19 +0.5
5,160,204 - PfGW456L13_4623 0.19 +0.9
5,160,204 - PfGW456L13_4623 0.19 +0.9
5,160,230 + PfGW456L13_4623 0.20 +0.1
5,160,289 + PfGW456L13_4623 0.23 +0.4
5,160,289 + PfGW456L13_4623 0.23 +0.5
5,160,290 - PfGW456L13_4623 0.23 +0.5
5,160,338 + PfGW456L13_4623 0.25 +0.3
5,160,338 + PfGW456L13_4623 0.25 +2.1
5,160,338 + PfGW456L13_4623 0.25 +0.7
5,160,339 - PfGW456L13_4623 0.25 +1.1
5,160,339 - PfGW456L13_4623 0.25 +1.1
5,160,339 - PfGW456L13_4623 0.25 +2.6
5,160,365 + PfGW456L13_4623 0.26 +0.4
5,160,365 + PfGW456L13_4623 0.26 +0.6
5,160,365 + PfGW456L13_4623 0.26 +0.5
5,160,365 + PfGW456L13_4623 0.26 -1.3
5,160,366 - PfGW456L13_4623 0.26 +0.3
5,160,366 - PfGW456L13_4623 0.26 -0.2
5,160,366 - PfGW456L13_4623 0.26 +0.7
5,160,366 - PfGW456L13_4623 0.26 +0.8
5,160,366 - PfGW456L13_4623 0.26 -0.8
5,160,366 - PfGW456L13_4623 0.26 +0.7
5,160,494 + PfGW456L13_4623 0.31 -1.6
5,160,494 + PfGW456L13_4623 0.31 +0.4
5,160,564 - PfGW456L13_4623 0.34 +0.7
5,160,629 + PfGW456L13_4623 0.37 -0.3
5,160,629 + PfGW456L13_4623 0.37 +1.0
5,160,629 + PfGW456L13_4623 0.37 +0.2
5,160,632 + +0.1
5,160,633 - PfGW456L13_4623 0.37 +0.9
5,160,797 + PfGW456L13_4623 0.43 -0.6
5,160,797 + PfGW456L13_4623 0.43 +0.1
5,160,798 - PfGW456L13_4623 0.43 +0.3
5,160,883 - PfGW456L13_4623 0.47 +0.0
5,160,883 - PfGW456L13_4623 0.47 -0.1
5,160,883 - PfGW456L13_4623 0.47 -0.3
5,160,883 - PfGW456L13_4623 0.47 -0.8
5,161,012 + PfGW456L13_4623 0.52 +0.3
5,161,012 + PfGW456L13_4623 0.52 -0.1
5,161,013 - PfGW456L13_4623 0.52 -0.4
5,161,013 - PfGW456L13_4623 0.52 -0.5
5,161,118 + PfGW456L13_4623 0.56 +0.6
5,161,142 + PfGW456L13_4623 0.57 +1.4
5,161,142 + PfGW456L13_4623 0.57 +0.7
5,161,142 + PfGW456L13_4623 0.57 +0.1
5,161,143 - PfGW456L13_4623 0.57 +0.0
5,161,143 - PfGW456L13_4623 0.57 -1.5
5,161,143 - PfGW456L13_4623 0.57 +0.1
5,161,170 - PfGW456L13_4623 0.58 +1.0
5,161,170 - PfGW456L13_4623 0.58 -0.5
5,161,286 + PfGW456L13_4623 0.63 -0.0
5,161,286 + PfGW456L13_4623 0.63 -0.1
5,161,286 + PfGW456L13_4623 0.63 +0.3
5,161,286 + PfGW456L13_4623 0.63 +0.4
5,161,286 + PfGW456L13_4623 0.63 -0.3
5,161,287 - PfGW456L13_4623 0.63 +1.5
5,161,287 - PfGW456L13_4623 0.63 -0.3
5,161,287 - -0.9
5,161,287 - PfGW456L13_4623 0.63 +0.7
5,161,287 - PfGW456L13_4623 0.63 +0.4
5,161,318 - PfGW456L13_4623 0.64 -0.8
5,161,361 + PfGW456L13_4623 0.66 +0.6
5,161,361 + PfGW456L13_4623 0.66 -0.6
5,161,362 - PfGW456L13_4623 0.66 +0.6
5,161,568 + PfGW456L13_4623 0.74 -0.6
5,161,569 - PfGW456L13_4623 0.74 +0.0
5,161,589 + PfGW456L13_4623 0.75 +0.7
5,161,590 - PfGW456L13_4623 0.75 +0.3
5,161,590 - PfGW456L13_4623 0.75 +0.3
5,161,590 - PfGW456L13_4623 0.75 +0.4
5,161,895 + PfGW456L13_4623 0.87 +0.9
5,161,895 + PfGW456L13_4623 0.87 +1.0
5,161,896 - PfGW456L13_4623 0.87 +1.2
5,161,896 - PfGW456L13_4623 0.87 +0.8
5,161,896 - PfGW456L13_4623 0.87 +0.5
5,161,896 - PfGW456L13_4623 0.87 +1.4
5,161,896 - PfGW456L13_4623 0.87 +0.8
5,161,896 - PfGW456L13_4623 0.87 +0.8
5,162,272 + +0.7
5,162,272 + +2.2
5,162,272 + -0.3
5,162,272 + +0.3
5,162,272 + -0.8
5,162,272 + +0.0
5,162,272 + +0.2
5,162,273 - -1.0
5,162,273 - -0.2
5,162,273 - -2.1
5,162,273 - -3.6
5,162,273 - -1.0
5,162,273 - +0.7
5,162,360 + -0.8
5,162,361 - -1.2
5,162,491 - -0.7
5,162,585 + PfGW456L13_4624 0.13 +1.3
5,162,586 - PfGW456L13_4624 0.13 -0.0
5,162,791 - PfGW456L13_4624 0.23 +0.1
5,163,023 + PfGW456L13_4624 0.33 -0.2
5,163,023 + PfGW456L13_4624 0.33 -0.0
5,163,023 + PfGW456L13_4624 0.33 +0.4
5,163,023 + PfGW456L13_4624 0.33 +0.7
5,163,024 - PfGW456L13_4624 0.33 +0.2

Or see this region's nucleotide sequence