Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4506 and PfGW456L13_4507 are separated by 17 nucleotides PfGW456L13_4507 and PfGW456L13_4508 are separated by 327 nucleotides PfGW456L13_4508 and PfGW456L13_4509 are separated by 10 nucleotides
PfGW456L13_4506 - Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor, at 5,039,100 to 5,040,215
_4506
PfGW456L13_4507 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 5,040,233 to 5,041,111
_4507
PfGW456L13_4508 - Glycine cleavage system transcriptional antiactivator GcvR, at 5,041,439 to 5,041,999
_4508
PfGW456L13_4509 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 5,042,010 to 5,042,483
_4509
Position (kb)
5040
5041
5042 Strain fitness (log2 ratio)
-2
-1
0
1 at 5039.336 kb on - strand, within PfGW456L13_4506 at 5039.336 kb on - strand, within PfGW456L13_4506 at 5039.336 kb on - strand, within PfGW456L13_4506 at 5039.336 kb on - strand, within PfGW456L13_4506 at 5039.336 kb on - strand, within PfGW456L13_4506 at 5039.339 kb on - strand, within PfGW456L13_4506 at 5039.339 kb on - strand, within PfGW456L13_4506 at 5039.339 kb on - strand, within PfGW456L13_4506 at 5039.339 kb on - strand, within PfGW456L13_4506 at 5039.541 kb on - strand, within PfGW456L13_4506 at 5039.541 kb on - strand, within PfGW456L13_4506 at 5039.660 kb on - strand, within PfGW456L13_4506 at 5039.660 kb on - strand, within PfGW456L13_4506 at 5039.660 kb on - strand, within PfGW456L13_4506 at 5039.673 kb on - strand, within PfGW456L13_4506 at 5039.673 kb on - strand, within PfGW456L13_4506 at 5040.131 kb on - strand at 5040.177 kb on - strand at 5040.177 kb on - strand at 5040.223 kb on - strand at 5040.223 kb on - strand at 5040.223 kb on - strand at 5040.715 kb on - strand, within PfGW456L13_4507 at 5040.793 kb on - strand, within PfGW456L13_4507 at 5040.793 kb on - strand, within PfGW456L13_4507 at 5040.793 kb on - strand, within PfGW456L13_4507 at 5040.793 kb on - strand, within PfGW456L13_4507 at 5041.149 kb on - strand at 5041.179 kb on + strand at 5041.179 kb on + strand at 5041.179 kb on + strand at 5041.179 kb on + strand at 5041.179 kb on + strand at 5041.180 kb on - strand at 5041.180 kb on - strand at 5041.276 kb on + strand at 5041.474 kb on + strand at 5041.613 kb on - strand, within PfGW456L13_4508 at 5041.654 kb on - strand, within PfGW456L13_4508 at 5041.730 kb on + strand, within PfGW456L13_4508 at 5041.730 kb on + strand, within PfGW456L13_4508 at 5041.730 kb on + strand, within PfGW456L13_4508 at 5041.731 kb on - strand, within PfGW456L13_4508 at 5041.731 kb on - strand, within PfGW456L13_4508 at 5041.731 kb on - strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.739 kb on + strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.740 kb on - strand, within PfGW456L13_4508 at 5041.755 kb on - strand, within PfGW456L13_4508 at 5041.835 kb on + strand, within PfGW456L13_4508 at 5041.835 kb on + strand, within PfGW456L13_4508 at 5041.835 kb on + strand, within PfGW456L13_4508 at 5041.836 kb on - strand, within PfGW456L13_4508 at 5041.836 kb on - strand, within PfGW456L13_4508 at 5041.836 kb on - strand, within PfGW456L13_4508 at 5041.836 kb on - strand, within PfGW456L13_4508 at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.997 kb on + strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5041.998 kb on - strand at 5042.104 kb on + strand, within PfGW456L13_4509 at 5042.105 kb on - strand, within PfGW456L13_4509
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 5,039,336 - PfGW456L13_4506 0.21 +0.2 5,039,336 - PfGW456L13_4506 0.21 +0.3 5,039,336 - PfGW456L13_4506 0.21 +0.2 5,039,336 - PfGW456L13_4506 0.21 -0.5 5,039,336 - PfGW456L13_4506 0.21 +1.0 5,039,339 - PfGW456L13_4506 0.21 -0.6 5,039,339 - PfGW456L13_4506 0.21 -0.3 5,039,339 - PfGW456L13_4506 0.21 -0.5 5,039,339 - PfGW456L13_4506 0.21 -0.2 5,039,541 - PfGW456L13_4506 0.40 -0.6 5,039,541 - PfGW456L13_4506 0.40 +0.7 5,039,660 - PfGW456L13_4506 0.50 +0.2 5,039,660 - PfGW456L13_4506 0.50 +0.5 5,039,660 - PfGW456L13_4506 0.50 +0.7 5,039,673 - PfGW456L13_4506 0.51 +0.4 5,039,673 - PfGW456L13_4506 0.51 -0.1 5,040,131 - -0.5 5,040,177 - -0.1 5,040,177 - -0.3 5,040,223 - +0.4 5,040,223 - -0.9 5,040,223 - +0.2 5,040,715 - PfGW456L13_4507 0.55 -0.8 5,040,793 - PfGW456L13_4507 0.64 +0.5 5,040,793 - PfGW456L13_4507 0.64 -0.4 5,040,793 - PfGW456L13_4507 0.64 -0.5 5,040,793 - PfGW456L13_4507 0.64 -2.5 5,041,149 - +0.3 5,041,179 + +1.3 5,041,179 + +0.2 5,041,179 + +0.2 5,041,179 + -0.3 5,041,179 + +0.7 5,041,180 - +0.7 5,041,180 - -0.2 5,041,276 + -0.1 5,041,474 + -0.6 5,041,613 - PfGW456L13_4508 0.31 -0.7 5,041,654 - PfGW456L13_4508 0.38 -1.1 5,041,730 + PfGW456L13_4508 0.52 +0.0 5,041,730 + PfGW456L13_4508 0.52 -0.3 5,041,730 + PfGW456L13_4508 0.52 -0.1 5,041,731 - PfGW456L13_4508 0.52 -0.4 5,041,731 - PfGW456L13_4508 0.52 -0.8 5,041,731 - PfGW456L13_4508 0.52 -0.6 5,041,739 + PfGW456L13_4508 0.53 +0.6 5,041,739 + PfGW456L13_4508 0.53 -0.5 5,041,739 + PfGW456L13_4508 0.53 +0.4 5,041,739 + PfGW456L13_4508 0.53 +0.3 5,041,739 + PfGW456L13_4508 0.53 -2.1 5,041,739 + PfGW456L13_4508 0.53 +0.3 5,041,739 + PfGW456L13_4508 0.53 -1.0 5,041,739 + PfGW456L13_4508 0.53 -0.4 5,041,739 + PfGW456L13_4508 0.53 -0.7 5,041,739 + PfGW456L13_4508 0.53 -0.7 5,041,740 - PfGW456L13_4508 0.54 +0.3 5,041,740 - PfGW456L13_4508 0.54 +0.5 5,041,740 - PfGW456L13_4508 0.54 +0.7 5,041,740 - PfGW456L13_4508 0.54 -1.3 5,041,740 - PfGW456L13_4508 0.54 -1.3 5,041,740 - PfGW456L13_4508 0.54 -0.4 5,041,740 - PfGW456L13_4508 0.54 -0.3 5,041,740 - PfGW456L13_4508 0.54 +0.8 5,041,740 - PfGW456L13_4508 0.54 -0.5 5,041,740 - PfGW456L13_4508 0.54 -0.1 5,041,755 - PfGW456L13_4508 0.56 -0.2 5,041,835 + PfGW456L13_4508 0.71 +0.5 5,041,835 + PfGW456L13_4508 0.71 -0.9 5,041,835 + PfGW456L13_4508 0.71 -0.1 5,041,836 - PfGW456L13_4508 0.71 +0.1 5,041,836 - PfGW456L13_4508 0.71 +0.9 5,041,836 - PfGW456L13_4508 0.71 +0.4 5,041,836 - PfGW456L13_4508 0.71 +0.0 5,041,997 + -0.3 5,041,997 + -0.3 5,041,997 + +0.7 5,041,997 + -1.4 5,041,997 + -0.2 5,041,997 + -0.5 5,041,997 + -0.6 5,041,997 + -1.1 5,041,997 + -0.5 5,041,997 + +0.3 5,041,997 + -1.3 5,041,997 + +0.2 5,041,997 + +0.9 5,041,998 - -2.0 5,041,998 - +1.0 5,041,998 - +1.4 5,041,998 - +0.3 5,041,998 - -1.3 5,041,998 - -0.5 5,041,998 - -1.3 5,041,998 - +0.7 5,041,998 - -0.1 5,041,998 - +0.7 5,041,998 - +0.2 5,041,998 - -1.0 5,041,998 - +0.7 5,041,998 - -0.6 5,042,104 + PfGW456L13_4509 0.20 +0.4 5,042,105 - PfGW456L13_4509 0.20 -1.3
Or see this region's nucleotide sequence