Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_40 and PfGW456L13_41 are separated by 31 nucleotides PfGW456L13_41 and PfGW456L13_42 are separated by 35 nucleotides PfGW456L13_42 and PfGW456L13_43 are separated by 232 nucleotides
PfGW456L13_40 - DNA-damage-inducible protein F, at 45,573 to 46,922
_40
PfGW456L13_41 - hypothetical protein, at 46,954 to 47,715
_41
PfGW456L13_42 - VgrG protein, at 47,751 to 49,070
_42
PfGW456L13_43 - Biosynthetic arginine decarboxylase (EC 4.1.1.19), at 49,303 to 51,216
_43
Position (kb) 47
48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.913 kb on + strand at 47.055 kb on - strand, within PfGW456L13_41 at 47.065 kb on + strand, within PfGW456L13_41 at 47.323 kb on - strand, within PfGW456L13_41 at 47.338 kb on + strand, within PfGW456L13_41 at 47.338 kb on + strand, within PfGW456L13_41 at 47.339 kb on - strand, within PfGW456L13_41 at 47.339 kb on - strand, within PfGW456L13_41 at 47.339 kb on - strand, within PfGW456L13_41 at 47.339 kb on - strand, within PfGW456L13_41 at 47.349 kb on + strand, within PfGW456L13_41 at 47.349 kb on + strand, within PfGW456L13_41 at 47.349 kb on + strand, within PfGW456L13_41 at 47.350 kb on - strand, within PfGW456L13_41 at 47.350 kb on - strand, within PfGW456L13_41 at 47.357 kb on - strand, within PfGW456L13_41 at 47.400 kb on - strand, within PfGW456L13_41 at 47.400 kb on - strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.420 kb on + strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.421 kb on - strand, within PfGW456L13_41 at 47.424 kb on - strand, within PfGW456L13_41 at 47.551 kb on + strand at 47.551 kb on + strand, within PfGW456L13_41 at 47.552 kb on - strand, within PfGW456L13_41 at 47.552 kb on - strand, within PfGW456L13_41 at 47.552 kb on - strand, within PfGW456L13_41 at 47.552 kb on - strand, within PfGW456L13_41 at 47.608 kb on + strand, within PfGW456L13_41 at 47.608 kb on + strand, within PfGW456L13_41 at 47.609 kb on - strand, within PfGW456L13_41 at 47.609 kb on - strand, within PfGW456L13_41 at 47.609 kb on - strand, within PfGW456L13_41 at 47.739 kb on + strand at 47.739 kb on + strand at 47.739 kb on + strand at 47.739 kb on + strand at 47.740 kb on - strand at 47.740 kb on - strand at 47.740 kb on - strand at 47.740 kb on - strand at 48.110 kb on - strand, within PfGW456L13_42 at 48.284 kb on + strand, within PfGW456L13_42 at 48.487 kb on - strand, within PfGW456L13_42 at 48.568 kb on + strand, within PfGW456L13_42 at 48.569 kb on - strand, within PfGW456L13_42 at 48.652 kb on + strand, within PfGW456L13_42 at 48.663 kb on + strand, within PfGW456L13_42 at 48.663 kb on + strand, within PfGW456L13_42 at 48.663 kb on + strand, within PfGW456L13_42 at 48.663 kb on + strand, within PfGW456L13_42 at 48.663 kb on + strand, within PfGW456L13_42 at 48.664 kb on - strand, within PfGW456L13_42 at 48.664 kb on - strand, within PfGW456L13_42 at 48.664 kb on - strand, within PfGW456L13_42 at 48.865 kb on + strand, within PfGW456L13_42 at 48.865 kb on + strand, within PfGW456L13_42 at 48.865 kb on + strand, within PfGW456L13_42 at 48.865 kb on + strand, within PfGW456L13_42 at 48.865 kb on + strand, within PfGW456L13_42 at 48.866 kb on - strand, within PfGW456L13_42 at 48.866 kb on - strand, within PfGW456L13_42 at 48.866 kb on - strand, within PfGW456L13_42 at 48.866 kb on - strand, within PfGW456L13_42 at 48.905 kb on - strand, within PfGW456L13_42 at 49.008 kb on + strand at 49.009 kb on - strand at 49.009 kb on - strand at 49.029 kb on + strand at 49.029 kb on + strand at 49.029 kb on + strand at 49.029 kb on + strand at 49.029 kb on + strand at 49.029 kb on + strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.030 kb on - strand at 49.082 kb on + strand at 49.128 kb on - strand at 49.128 kb on - strand at 49.141 kb on - strand at 49.147 kb on + strand at 49.148 kb on - strand at 49.148 kb on - strand at 49.154 kb on + strand at 49.154 kb on + strand at 49.154 kb on + strand at 49.154 kb on + strand at 49.154 kb on + strand at 49.155 kb on - strand at 49.155 kb on - strand at 49.155 kb on - strand at 49.159 kb on + strand at 49.299 kb on + strand at 49.299 kb on + strand at 49.300 kb on - strand at 49.300 kb on - strand at 49.300 kb on - strand at 49.300 kb on - strand at 49.300 kb on - strand at 49.300 kb on - strand at 49.316 kb on + strand at 49.316 kb on + strand at 49.316 kb on + strand at 49.316 kb on + strand at 49.317 kb on - strand at 49.317 kb on - strand at 49.317 kb on - strand at 49.317 kb on - strand at 49.317 kb on - strand at 49.442 kb on + strand at 49.443 kb on - strand at 49.490 kb on + strand at 49.491 kb on - strand at 49.514 kb on + strand, within PfGW456L13_43 at 49.515 kb on - strand, within PfGW456L13_43 at 49.515 kb on - strand, within PfGW456L13_43 at 49.515 kb on - strand, within PfGW456L13_43 at 49.515 kb on - strand, within PfGW456L13_43 at 49.575 kb on - strand, within PfGW456L13_43 at 49.604 kb on + strand, within PfGW456L13_43 at 49.604 kb on + strand, within PfGW456L13_43 at 49.604 kb on + strand, within PfGW456L13_43 at 49.604 kb on + strand, within PfGW456L13_43 at 49.604 kb on + strand, within PfGW456L13_43 at 49.604 kb on + strand, within PfGW456L13_43 at 49.605 kb on - strand, within PfGW456L13_43 at 49.605 kb on - strand, within PfGW456L13_43 at 49.605 kb on - strand, within PfGW456L13_43 at 49.605 kb on - strand, within PfGW456L13_43 at 49.605 kb on - strand, within PfGW456L13_43 at 49.605 kb on - strand, within PfGW456L13_43 at 49.667 kb on + strand, within PfGW456L13_43 at 49.667 kb on + strand, within PfGW456L13_43 at 49.668 kb on - strand, within PfGW456L13_43 at 49.668 kb on - strand, within PfGW456L13_43 at 49.668 kb on - strand, within PfGW456L13_43 at 49.668 kb on - strand, within PfGW456L13_43 at 49.668 kb on - strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.823 kb on + strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.824 kb on - strand, within PfGW456L13_43 at 49.922 kb on + strand, within PfGW456L13_43 at 49.922 kb on + strand, within PfGW456L13_43 at 49.922 kb on + strand, within PfGW456L13_43 at 49.923 kb on - strand, within PfGW456L13_43 at 49.973 kb on + strand, within PfGW456L13_43 at 49.997 kb on + strand, within PfGW456L13_43 at 49.997 kb on + strand, within PfGW456L13_43 at 49.997 kb on + strand, within PfGW456L13_43 at 49.997 kb on + strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 49.998 kb on - strand, within PfGW456L13_43 at 50.015 kb on + strand, within PfGW456L13_43
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 46,913 + +0.0 47,055 - PfGW456L13_41 0.13 -0.0 47,065 + PfGW456L13_41 0.15 -0.5 47,323 - PfGW456L13_41 0.48 +0.5 47,338 + PfGW456L13_41 0.50 +0.3 47,338 + PfGW456L13_41 0.50 +0.6 47,339 - PfGW456L13_41 0.51 -0.0 47,339 - PfGW456L13_41 0.51 +0.0 47,339 - PfGW456L13_41 0.51 +0.6 47,339 - PfGW456L13_41 0.51 +0.8 47,349 + PfGW456L13_41 0.52 -0.8 47,349 + PfGW456L13_41 0.52 +0.5 47,349 + PfGW456L13_41 0.52 +0.0 47,350 - PfGW456L13_41 0.52 +0.1 47,350 - PfGW456L13_41 0.52 -1.0 47,357 - PfGW456L13_41 0.53 +0.3 47,400 - PfGW456L13_41 0.59 +0.1 47,400 - PfGW456L13_41 0.59 -1.2 47,420 + PfGW456L13_41 0.61 -0.8 47,420 + PfGW456L13_41 0.61 +1.0 47,420 + PfGW456L13_41 0.61 +0.4 47,420 + PfGW456L13_41 0.61 -0.4 47,420 + PfGW456L13_41 0.61 -0.1 47,420 + PfGW456L13_41 0.61 +1.4 47,420 + PfGW456L13_41 0.61 -0.8 47,420 + PfGW456L13_41 0.61 -0.7 47,421 - PfGW456L13_41 0.61 -0.6 47,421 - PfGW456L13_41 0.61 -0.3 47,421 - PfGW456L13_41 0.61 +0.2 47,421 - PfGW456L13_41 0.61 -1.2 47,421 - PfGW456L13_41 0.61 +0.1 47,421 - PfGW456L13_41 0.61 +0.6 47,421 - PfGW456L13_41 0.61 +0.7 47,421 - PfGW456L13_41 0.61 -1.6 47,424 - PfGW456L13_41 0.62 -0.4 47,551 + -1.2 47,551 + PfGW456L13_41 0.78 +0.5 47,552 - PfGW456L13_41 0.78 -0.2 47,552 - PfGW456L13_41 0.78 +0.2 47,552 - PfGW456L13_41 0.78 +1.8 47,552 - PfGW456L13_41 0.78 -0.0 47,608 + PfGW456L13_41 0.86 -0.3 47,608 + PfGW456L13_41 0.86 +0.7 47,609 - PfGW456L13_41 0.86 -0.2 47,609 - PfGW456L13_41 0.86 -0.8 47,609 - PfGW456L13_41 0.86 +0.1 47,739 + +0.1 47,739 + -0.4 47,739 + -1.3 47,739 + +0.0 47,740 - -1.8 47,740 - +0.0 47,740 - -1.4 47,740 - +1.2 48,110 - PfGW456L13_42 0.27 -0.2 48,284 + PfGW456L13_42 0.40 -1.0 48,487 - PfGW456L13_42 0.56 +1.1 48,568 + PfGW456L13_42 0.62 -2.5 48,569 - PfGW456L13_42 0.62 +0.5 48,652 + PfGW456L13_42 0.68 +0.8 48,663 + PfGW456L13_42 0.69 +0.1 48,663 + PfGW456L13_42 0.69 +0.6 48,663 + PfGW456L13_42 0.69 -1.0 48,663 + PfGW456L13_42 0.69 -0.1 48,663 + PfGW456L13_42 0.69 -2.6 48,664 - PfGW456L13_42 0.69 +0.6 48,664 - PfGW456L13_42 0.69 +0.1 48,664 - PfGW456L13_42 0.69 +0.2 48,865 + PfGW456L13_42 0.84 +0.3 48,865 + PfGW456L13_42 0.84 +0.1 48,865 + PfGW456L13_42 0.84 +0.5 48,865 + PfGW456L13_42 0.84 +0.5 48,865 + PfGW456L13_42 0.84 +0.6 48,866 - PfGW456L13_42 0.84 +0.4 48,866 - PfGW456L13_42 0.84 +1.3 48,866 - PfGW456L13_42 0.84 +0.5 48,866 - PfGW456L13_42 0.84 -0.2 48,905 - PfGW456L13_42 0.87 -0.2 49,008 + -0.3 49,009 - -0.0 49,009 - +0.2 49,029 + +1.5 49,029 + +0.4 49,029 + -2.9 49,029 + -0.7 49,029 + +0.2 49,029 + +0.8 49,030 - -0.0 49,030 - +0.5 49,030 - -0.2 49,030 - +0.2 49,030 - +0.8 49,030 - -0.7 49,030 - +0.6 49,030 - -0.5 49,030 - -1.6 49,030 - +0.2 49,030 - +1.1 49,030 - +0.2 49,082 + -1.4 49,128 - -0.2 49,128 - -0.3 49,141 - -0.9 49,147 + +0.7 49,148 - -0.6 49,148 - +0.8 49,154 + -0.4 49,154 + +1.8 49,154 + +1.1 49,154 + -0.4 49,154 + -0.5 49,155 - +0.8 49,155 - -0.3 49,155 - -0.5 49,159 + +0.2 49,299 + -0.6 49,299 + +1.4 49,300 - +1.4 49,300 - -0.8 49,300 - -1.7 49,300 - +1.8 49,300 - -0.6 49,300 - +0.4 49,316 + +0.2 49,316 + +1.5 49,316 + +1.3 49,316 + -0.0 49,317 - +0.0 49,317 - +0.7 49,317 - +1.0 49,317 - +1.6 49,317 - +0.2 49,442 + +0.9 49,443 - +0.3 49,490 + +0.2 49,491 - +1.1 49,514 + PfGW456L13_43 0.11 +0.6 49,515 - PfGW456L13_43 0.11 +2.0 49,515 - PfGW456L13_43 0.11 +1.8 49,515 - PfGW456L13_43 0.11 +1.0 49,515 - PfGW456L13_43 0.11 +1.3 49,575 - PfGW456L13_43 0.14 +1.5 49,604 + PfGW456L13_43 0.16 +1.2 49,604 + PfGW456L13_43 0.16 +0.6 49,604 + PfGW456L13_43 0.16 -0.2 49,604 + PfGW456L13_43 0.16 +0.6 49,604 + PfGW456L13_43 0.16 +1.1 49,604 + PfGW456L13_43 0.16 +0.9 49,605 - PfGW456L13_43 0.16 +0.7 49,605 - PfGW456L13_43 0.16 +0.9 49,605 - PfGW456L13_43 0.16 +0.8 49,605 - PfGW456L13_43 0.16 +1.1 49,605 - PfGW456L13_43 0.16 +1.1 49,605 - PfGW456L13_43 0.16 +0.1 49,667 + PfGW456L13_43 0.19 +1.2 49,667 + PfGW456L13_43 0.19 +0.5 49,668 - PfGW456L13_43 0.19 +0.9 49,668 - PfGW456L13_43 0.19 +1.2 49,668 - PfGW456L13_43 0.19 +0.7 49,668 - PfGW456L13_43 0.19 +1.1 49,668 - PfGW456L13_43 0.19 +0.5 49,823 + PfGW456L13_43 0.27 +0.7 49,823 + PfGW456L13_43 0.27 +0.8 49,823 + PfGW456L13_43 0.27 +0.8 49,823 + PfGW456L13_43 0.27 +0.6 49,823 + PfGW456L13_43 0.27 -0.5 49,823 + PfGW456L13_43 0.27 -0.0 49,823 + PfGW456L13_43 0.27 +1.0 49,823 + PfGW456L13_43 0.27 +0.3 49,824 - PfGW456L13_43 0.27 +0.9 49,824 - PfGW456L13_43 0.27 +1.1 49,824 - PfGW456L13_43 0.27 +1.0 49,824 - PfGW456L13_43 0.27 +0.5 49,824 - PfGW456L13_43 0.27 +1.6 49,824 - PfGW456L13_43 0.27 +0.8 49,824 - PfGW456L13_43 0.27 +0.7 49,824 - PfGW456L13_43 0.27 +0.6 49,824 - PfGW456L13_43 0.27 +0.8 49,824 - PfGW456L13_43 0.27 +0.8 49,824 - PfGW456L13_43 0.27 +0.8 49,824 - PfGW456L13_43 0.27 +1.3 49,824 - PfGW456L13_43 0.27 +0.6 49,824 - PfGW456L13_43 0.27 +0.5 49,824 - PfGW456L13_43 0.27 +0.6 49,824 - PfGW456L13_43 0.27 +0.3 49,824 - PfGW456L13_43 0.27 +0.4 49,824 - PfGW456L13_43 0.27 +0.4 49,824 - PfGW456L13_43 0.27 +1.1 49,824 - PfGW456L13_43 0.27 +1.1 49,824 - PfGW456L13_43 0.27 +0.9 49,824 - PfGW456L13_43 0.27 +0.3 49,824 - PfGW456L13_43 0.27 +0.7 49,922 + PfGW456L13_43 0.32 +0.3 49,922 + PfGW456L13_43 0.32 +1.0 49,922 + PfGW456L13_43 0.32 +0.5 49,923 - PfGW456L13_43 0.32 +0.3 49,973 + PfGW456L13_43 0.35 +1.5 49,997 + PfGW456L13_43 0.36 +0.4 49,997 + PfGW456L13_43 0.36 +1.6 49,997 + PfGW456L13_43 0.36 +0.4 49,997 + PfGW456L13_43 0.36 +0.8 49,998 - PfGW456L13_43 0.36 +1.8 49,998 - PfGW456L13_43 0.36 +1.4 49,998 - PfGW456L13_43 0.36 +0.8 49,998 - PfGW456L13_43 0.36 +1.7 49,998 - PfGW456L13_43 0.36 +1.2 49,998 - PfGW456L13_43 0.36 +0.2 49,998 - PfGW456L13_43 0.36 +1.6 49,998 - PfGW456L13_43 0.36 +0.9 49,998 - PfGW456L13_43 0.36 +1.5 49,998 - PfGW456L13_43 0.36 +2.6 49,998 - PfGW456L13_43 0.36 +1.1 49,998 - PfGW456L13_43 0.36 -0.2 49,998 - PfGW456L13_43 0.36 +1.2 49,998 - PfGW456L13_43 0.36 +0.9 50,015 + PfGW456L13_43 0.37 +1.1
Or see this region's nucleotide sequence