Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_355

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_354 and PfGW456L13_355 are separated by 34 nucleotidesPfGW456L13_355 and PfGW456L13_356 are separated by 1 nucleotidesPfGW456L13_356 and PfGW456L13_357 are separated by 148 nucleotides PfGW456L13_354 - Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP, at 414,295 to 415,506 _354 PfGW456L13_355 - Carboxyl-terminal protease (EC 3.4.21.102), at 415,541 to 416,860 _355 PfGW456L13_356 - Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase, at 416,862 to 417,638 _356 PfGW456L13_357 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 417,787 to 418,542 _357 Position (kb) 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.571 kb on + strand, within PfGW456L13_354at 414.572 kb on - strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.628 kb on + strand, within PfGW456L13_354at 414.629 kb on - strand, within PfGW456L13_354at 414.629 kb on - strand, within PfGW456L13_354at 414.629 kb on - strand, within PfGW456L13_354at 414.631 kb on + strand, within PfGW456L13_354at 414.631 kb on + strand, within PfGW456L13_354at 414.631 kb on + strand, within PfGW456L13_354at 414.632 kb on - strand, within PfGW456L13_354at 414.637 kb on + strand, within PfGW456L13_354at 414.638 kb on - strand, within PfGW456L13_354at 414.833 kb on + strand, within PfGW456L13_354at 414.833 kb on + strand, within PfGW456L13_354at 414.833 kb on + strand, within PfGW456L13_354at 414.834 kb on - strand, within PfGW456L13_354at 414.888 kb on + strand, within PfGW456L13_354at 414.889 kb on - strand, within PfGW456L13_354at 414.897 kb on + strand, within PfGW456L13_354at 414.995 kb on + strand, within PfGW456L13_354at 414.996 kb on - strand, within PfGW456L13_354at 415.248 kb on - strand, within PfGW456L13_354at 415.324 kb on + strand, within PfGW456L13_354at 415.325 kb on - strand, within PfGW456L13_354at 415.325 kb on - strand, within PfGW456L13_354at 415.325 kb on - strand, within PfGW456L13_354at 415.337 kb on - strand, within PfGW456L13_354at 415.337 kb on - strand, within PfGW456L13_354at 415.337 kb on - strand, within PfGW456L13_354at 415.379 kb on + strand, within PfGW456L13_354at 415.379 kb on + strand, within PfGW456L13_354at 415.380 kb on - strand, within PfGW456L13_354at 415.396 kb on - strandat 415.442 kb on - strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.510 kb on + strandat 415.511 kb on - strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.520 kb on + strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.521 kb on - strandat 415.525 kb on + strandat 415.525 kb on + strandat 415.526 kb on - strandat 415.730 kb on + strand, within PfGW456L13_355at 415.730 kb on + strand, within PfGW456L13_355at 415.811 kb on + strand, within PfGW456L13_355at 415.812 kb on - strand, within PfGW456L13_355at 416.166 kb on - strand, within PfGW456L13_355at 416.166 kb on - strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.597 kb on + strand, within PfGW456L13_355at 416.598 kb on - strand, within PfGW456L13_355at 416.598 kb on - strand, within PfGW456L13_355at 416.598 kb on - strand, within PfGW456L13_355at 416.601 kb on - strand, within PfGW456L13_355at 416.694 kb on - strand, within PfGW456L13_355at 416.801 kb on + strandat 416.802 kb on - strandat 416.949 kb on + strand, within PfGW456L13_356at 416.949 kb on + strand, within PfGW456L13_356at 416.949 kb on + strand, within PfGW456L13_356at 416.950 kb on - strand, within PfGW456L13_356at 416.950 kb on - strand, within PfGW456L13_356at 416.950 kb on - strand, within PfGW456L13_356at 417.210 kb on + strand, within PfGW456L13_356at 417.210 kb on + strand, within PfGW456L13_356at 417.211 kb on - strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.391 kb on + strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.392 kb on - strand, within PfGW456L13_356at 417.630 kb on + strandat 417.658 kb on + strandat 417.658 kb on + strandat 417.658 kb on + strandat 417.659 kb on - strandat 417.659 kb on - strandat 417.708 kb on + strandat 417.778 kb on + strandat 417.788 kb on + strandat 417.788 kb on + strandat 417.788 kb on + strandat 417.788 kb on + strandat 417.789 kb on - strandat 417.789 kb on - strandat 417.789 kb on - strandat 417.794 kb on + strandat 417.794 kb on + strandat 417.795 kb on - strandat 417.795 kb on - strandat 417.795 kb on - strandat 417.795 kb on - strandat 417.805 kb on + strandat 417.805 kb on + strandat 417.806 kb on - strandat 417.806 kb on - strandat 417.806 kb on - strandat 417.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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414,571 + PfGW456L13_354 0.23 +0.9
414,572 - PfGW456L13_354 0.23 -0.4
414,628 + PfGW456L13_354 0.27 -0.4
414,628 + PfGW456L13_354 0.27 -2.4
414,628 + PfGW456L13_354 0.27 -2.1
414,628 + PfGW456L13_354 0.27 -1.0
414,628 + PfGW456L13_354 0.27 +0.5
414,628 + PfGW456L13_354 0.27 -1.1
414,628 + PfGW456L13_354 0.27 +0.5
414,628 + PfGW456L13_354 0.27 -0.4
414,629 - PfGW456L13_354 0.28 -0.7
414,629 - PfGW456L13_354 0.28 +0.2
414,629 - PfGW456L13_354 0.28 -0.7
414,631 + PfGW456L13_354 0.28 -3.0
414,631 + PfGW456L13_354 0.28 -1.1
414,631 + PfGW456L13_354 0.28 -1.0
414,632 - PfGW456L13_354 0.28 +1.0
414,637 + PfGW456L13_354 0.28 -1.4
414,638 - PfGW456L13_354 0.28 -0.8
414,833 + PfGW456L13_354 0.44 +0.0
414,833 + PfGW456L13_354 0.44 -1.1
414,833 + PfGW456L13_354 0.44 -0.8
414,834 - PfGW456L13_354 0.44 +1.0
414,888 + PfGW456L13_354 0.49 +0.8
414,889 - PfGW456L13_354 0.49 +1.4
414,897 + PfGW456L13_354 0.50 -1.1
414,995 + PfGW456L13_354 0.58 -0.3
414,996 - PfGW456L13_354 0.58 +0.5
415,248 - PfGW456L13_354 0.79 -0.7
415,324 + PfGW456L13_354 0.85 -0.6
415,325 - PfGW456L13_354 0.85 +2.2
415,325 - PfGW456L13_354 0.85 +0.8
415,325 - PfGW456L13_354 0.85 +2.5
415,337 - PfGW456L13_354 0.86 -0.3
415,337 - PfGW456L13_354 0.86 +0.6
415,337 - PfGW456L13_354 0.86 +0.1
415,379 + PfGW456L13_354 0.89 -1.2
415,379 + PfGW456L13_354 0.89 -1.2
415,380 - PfGW456L13_354 0.90 +1.1
415,396 - +0.4
415,442 - +0.0
415,510 + +0.3
415,510 + -1.5
415,510 + +0.9
415,510 + -0.0
415,510 + -1.4
415,511 - +2.0
415,520 + +0.7
415,520 + +0.1
415,520 + +0.0
415,520 + -0.1
415,520 + +1.1
415,521 - +1.2
415,521 - +0.8
415,521 - +0.4
415,521 - -0.0
415,521 - +0.5
415,521 - +0.1
415,521 - +0.2
415,521 - +1.1
415,521 - +0.1
415,521 - +0.5
415,521 - +0.1
415,521 - -0.4
415,521 - +0.3
415,525 + +0.5
415,525 + -0.4
415,526 - -0.1
415,730 + PfGW456L13_355 0.14 -1.7
415,730 + PfGW456L13_355 0.14 +0.6
415,811 + PfGW456L13_355 0.20 -0.5
415,812 - PfGW456L13_355 0.21 -0.3
416,166 - PfGW456L13_355 0.47 -1.1
416,166 - PfGW456L13_355 0.47 -3.6
416,597 + PfGW456L13_355 0.80 -2.1
416,597 + PfGW456L13_355 0.80 -3.0
416,597 + PfGW456L13_355 0.80 +0.1
416,597 + PfGW456L13_355 0.80 -1.6
416,597 + PfGW456L13_355 0.80 -0.9
416,597 + PfGW456L13_355 0.80 -0.4
416,597 + PfGW456L13_355 0.80 +0.3
416,598 - PfGW456L13_355 0.80 -0.8
416,598 - PfGW456L13_355 0.80 -1.4
416,598 - PfGW456L13_355 0.80 -1.3
416,601 - PfGW456L13_355 0.80 -1.6
416,694 - PfGW456L13_355 0.87 +0.7
416,801 + -0.9
416,802 - -0.1
416,949 + PfGW456L13_356 0.11 +0.2
416,949 + PfGW456L13_356 0.11 +0.0
416,949 + PfGW456L13_356 0.11 -0.1
416,950 - PfGW456L13_356 0.11 +0.3
416,950 - PfGW456L13_356 0.11 +0.1
416,950 - PfGW456L13_356 0.11 -0.2
417,210 + PfGW456L13_356 0.45 -0.4
417,210 + PfGW456L13_356 0.45 -1.2
417,211 - PfGW456L13_356 0.45 +0.5
417,391 + PfGW456L13_356 0.68 -0.5
417,391 + PfGW456L13_356 0.68 +0.4
417,391 + PfGW456L13_356 0.68 -0.2
417,391 + PfGW456L13_356 0.68 -0.4
417,391 + PfGW456L13_356 0.68 +0.3
417,391 + PfGW456L13_356 0.68 -1.2
417,392 - PfGW456L13_356 0.68 -1.7
417,392 - PfGW456L13_356 0.68 +0.0
417,392 - PfGW456L13_356 0.68 +0.1
417,392 - PfGW456L13_356 0.68 +0.8
417,392 - PfGW456L13_356 0.68 -0.1
417,630 + +0.4
417,658 + +0.9
417,658 + -0.4
417,658 + +0.7
417,659 - +0.7
417,659 - -0.5
417,708 + -0.5
417,778 + -1.7
417,788 + -1.9
417,788 + -1.4
417,788 + +0.9
417,788 + +1.3
417,789 - +0.4
417,789 - +0.3
417,789 - +0.3
417,794 + -0.4
417,794 + +0.1
417,795 - -0.1
417,795 - +0.0
417,795 - -0.9
417,795 - -0.1
417,805 + -1.3
417,805 + +0.1
417,806 - +1.2
417,806 - -0.0
417,806 - +0.3
417,806 - +0.9

Or see this region's nucleotide sequence