Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3448

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3447 and PfGW456L13_3448 are separated by 39 nucleotidesPfGW456L13_3448 and PfGW456L13_3449 are separated by 95 nucleotides PfGW456L13_3447 - Transcriptional regulator, AraC family, at 3,869,118 to 3,870,023 _3447 PfGW456L13_3448 - Quinone oxidoreductase (EC 1.6.5.5), at 3,870,063 to 3,870,989 _3448 PfGW456L13_3449 - Major facilitator superfamily MFS_1, at 3,871,085 to 3,872,332 _3449 Position (kb) 3870 3871Strain fitness (log2 ratio) -2 -1 0 1at 3869.096 kb on - strandat 3869.402 kb on - strand, within PfGW456L13_3447at 3869.648 kb on + strand, within PfGW456L13_3447at 3869.850 kb on + strand, within PfGW456L13_3447at 3869.911 kb on + strand, within PfGW456L13_3447at 3869.912 kb on - strand, within PfGW456L13_3447at 3869.912 kb on - strand, within PfGW456L13_3447at 3869.912 kb on - strand, within PfGW456L13_3447at 3869.926 kb on - strand, within PfGW456L13_3447at 3869.987 kb on + strandat 3870.021 kb on + strandat 3870.022 kb on - strandat 3870.154 kb on + strandat 3870.155 kb on - strandat 3870.268 kb on - strand, within PfGW456L13_3448at 3870.268 kb on - strand, within PfGW456L13_3448at 3870.448 kb on - strand, within PfGW456L13_3448at 3870.778 kb on + strand, within PfGW456L13_3448at 3870.779 kb on - strand, within PfGW456L13_3448at 3870.864 kb on + strand, within PfGW456L13_3448at 3870.864 kb on + strand, within PfGW456L13_3448at 3870.865 kb on - strand, within PfGW456L13_3448at 3870.865 kb on - strand, within PfGW456L13_3448at 3870.974 kb on + strandat 3871.015 kb on + strandat 3871.015 kb on + strandat 3871.028 kb on - strandat 3871.168 kb on + strandat 3871.309 kb on - strand, within PfGW456L13_3449at 3871.384 kb on - strand, within PfGW456L13_3449at 3871.384 kb on - strand, within PfGW456L13_3449at 3871.407 kb on + strand, within PfGW456L13_3449at 3871.410 kb on - strand, within PfGW456L13_3449at 3871.410 kb on - strand, within PfGW456L13_3449at 3871.410 kb on - strand, within PfGW456L13_3449at 3871.520 kb on + strand, within PfGW456L13_3449at 3871.521 kb on - strand, within PfGW456L13_3449at 3871.754 kb on + strand, within PfGW456L13_3449

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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3,869,096 - -0.7
3,869,402 - PfGW456L13_3447 0.31 -1.4
3,869,648 + PfGW456L13_3447 0.58 -0.5
3,869,850 + PfGW456L13_3447 0.81 +0.5
3,869,911 + PfGW456L13_3447 0.88 -1.2
3,869,912 - PfGW456L13_3447 0.88 +0.1
3,869,912 - PfGW456L13_3447 0.88 +0.4
3,869,912 - PfGW456L13_3447 0.88 +0.2
3,869,926 - PfGW456L13_3447 0.89 -0.1
3,869,987 + -0.7
3,870,021 + +0.3
3,870,022 - +0.4
3,870,154 + +0.5
3,870,155 - +1.0
3,870,268 - PfGW456L13_3448 0.22 -1.9
3,870,268 - PfGW456L13_3448 0.22 -1.0
3,870,448 - PfGW456L13_3448 0.42 -0.5
3,870,778 + PfGW456L13_3448 0.77 +0.3
3,870,779 - PfGW456L13_3448 0.77 -0.9
3,870,864 + PfGW456L13_3448 0.86 -0.3
3,870,864 + PfGW456L13_3448 0.86 -0.4
3,870,865 - PfGW456L13_3448 0.87 -0.4
3,870,865 - PfGW456L13_3448 0.87 -0.4
3,870,974 + -0.4
3,871,015 + +0.2
3,871,015 + +0.9
3,871,028 - +0.1
3,871,168 + +0.4
3,871,309 - PfGW456L13_3449 0.18 +0.6
3,871,384 - PfGW456L13_3449 0.24 -0.1
3,871,384 - PfGW456L13_3449 0.24 -0.2
3,871,407 + PfGW456L13_3449 0.26 +1.5
3,871,410 - PfGW456L13_3449 0.26 +1.6
3,871,410 - PfGW456L13_3449 0.26 +0.3
3,871,410 - PfGW456L13_3449 0.26 -0.4
3,871,520 + PfGW456L13_3449 0.35 +0.7
3,871,521 - PfGW456L13_3449 0.35 +0.6
3,871,754 + PfGW456L13_3449 0.54 +0.6

Or see this region's nucleotide sequence