Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_274 and PfGW456L13_275 are separated by 10 nucleotides PfGW456L13_275 and PfGW456L13_276 are separated by 151 nucleotides PfGW456L13_276 and PfGW456L13_277 are separated by 31 nucleotides
PfGW456L13_274 - DamX, an inner membrane protein involved in bile resistance, at 321,201 to 322,802
_274
PfGW456L13_275 - 3-dehydroquinate synthase (EC 4.2.3.4), at 322,813 to 323,913
_275
PfGW456L13_276 - Shikimate kinase I (EC 2.7.1.71), at 324,065 to 324,556
_276
PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657
_277
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 321.978 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.146 kb on - strand, within PfGW456L13_274 at 322.213 kb on + strand, within PfGW456L13_274 at 322.420 kb on + strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.518 kb on + strand, within PfGW456L13_274 at 322.518 kb on + strand, within PfGW456L13_274 at 322.518 kb on + strand, within PfGW456L13_274 at 322.566 kb on + strand, within PfGW456L13_274 at 322.661 kb on - strand at 322.762 kb on + strand at 322.763 kb on - strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.811 kb on + strand at 322.811 kb on + strand at 322.811 kb on + strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.814 kb on + strand at 322.822 kb on - strand at 322.822 kb on - strand at 322.842 kb on - strand at 322.842 kb on - strand at 322.965 kb on + strand, within PfGW456L13_275 at 322.965 kb on + strand, within PfGW456L13_275 at 322.965 kb on + strand, within PfGW456L13_275 at 323.144 kb on + strand, within PfGW456L13_275 at 323.270 kb on + strand, within PfGW456L13_275 at 323.804 kb on - strand at 323.944 kb on + strand at 323.964 kb on + strand at 324.067 kb on - strand at 324.095 kb on + strand at 324.095 kb on + strand at 324.096 kb on - strand at 324.096 kb on - strand at 324.096 kb on - strand at 324.107 kb on + strand at 324.107 kb on + strand at 324.288 kb on + strand, within PfGW456L13_276 at 324.289 kb on - strand, within PfGW456L13_276 at 324.623 kb on + strand at 324.624 kb on - strand at 324.639 kb on + strand at 324.639 kb on + strand at 324.640 kb on - strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.746 kb on + strand at 324.831 kb on + strand, within PfGW456L13_277 at 324.832 kb on - strand, within PfGW456L13_277 at 324.832 kb on - strand, within PfGW456L13_277
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 321,978 + PfGW456L13_274 0.49 -0.8 322,028 + PfGW456L13_274 0.52 -3.2 322,028 + PfGW456L13_274 0.52 -0.6 322,028 + PfGW456L13_274 0.52 -1.9 322,028 + PfGW456L13_274 0.52 -3.5 322,146 - PfGW456L13_274 0.59 -1.4 322,213 + PfGW456L13_274 0.63 -0.1 322,420 + PfGW456L13_274 0.76 -2.4 322,421 - PfGW456L13_274 0.76 -2.7 322,421 - PfGW456L13_274 0.76 -0.3 322,421 - PfGW456L13_274 0.76 -1.4 322,421 - PfGW456L13_274 0.76 -1.8 322,518 + PfGW456L13_274 0.82 -3.1 322,518 + PfGW456L13_274 0.82 -2.6 322,518 + PfGW456L13_274 0.82 -3.0 322,566 + PfGW456L13_274 0.85 -1.0 322,661 - -0.8 322,762 + -1.5 322,763 - -0.8 322,796 + -2.1 322,796 + -2.7 322,796 + -2.7 322,796 + -2.3 322,796 + -1.1 322,796 + -3.3 322,797 - -0.8 322,797 - -1.8 322,797 - -2.6 322,797 - -1.8 322,797 - -1.4 322,797 - -0.9 322,797 - -1.5 322,811 + -1.0 322,811 + -1.3 322,811 + -1.7 322,812 - -0.3 322,812 - -1.2 322,812 - -0.4 322,812 - -1.9 322,812 - -1.8 322,812 - -0.0 322,812 - +0.0 322,814 + -2.2 322,822 - +0.8 322,822 - +0.7 322,842 - +0.3 322,842 - +1.5 322,965 + PfGW456L13_275 0.14 -2.1 322,965 + PfGW456L13_275 0.14 -1.7 322,965 + PfGW456L13_275 0.14 -1.4 323,144 + PfGW456L13_275 0.30 -0.7 323,270 + PfGW456L13_275 0.42 -0.7 323,804 - -1.4 323,944 + -2.7 323,964 + -1.7 324,067 - +0.7 324,095 + -0.9 324,095 + -1.6 324,096 - -0.6 324,096 - +1.3 324,096 - +0.6 324,107 + -2.7 324,107 + -0.9 324,288 + PfGW456L13_276 0.45 -0.4 324,289 - PfGW456L13_276 0.46 -0.9 324,623 + -1.3 324,624 - +0.5 324,639 + +0.2 324,639 + -0.8 324,640 - +0.7 324,725 + -1.5 324,725 + -0.5 324,725 + +0.3 324,725 + -0.6 324,725 + -1.9 324,725 + +0.1 324,725 + -0.5 324,725 + -0.5 324,725 + -0.1 324,725 + -0.8 324,725 + +0.2 324,725 + -0.6 324,725 + -0.6 324,725 + -0.4 324,726 - +1.1 324,726 - +1.0 324,726 - +0.8 324,726 - +1.4 324,726 - +0.7 324,726 - +0.0 324,726 - +0.7 324,726 - +0.0 324,729 + -0.5 324,729 + -0.2 324,729 + -0.2 324,729 + -1.3 324,729 + -0.8 324,729 + +0.3 324,730 - -1.3 324,730 - -0.1 324,730 - +0.6 324,730 - +0.8 324,730 - +0.5 324,746 + -1.9 324,831 + PfGW456L13_277 0.12 +0.5 324,832 - PfGW456L13_277 0.12 -0.1 324,832 - PfGW456L13_277 0.12 -0.3
Or see this region's nucleotide sequence