Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2631 and PfGW456L13_2632 are separated by 72 nucleotides
PfGW456L13_2631 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 2,929,278 to 2,931,062
_2631
PfGW456L13_2632 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 2,931,135 to 2,931,809
_2632
Position (kb)
2931
2932 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2930.779 kb on + strand, within PfGW456L13_2631 at 2930.780 kb on - strand, within PfGW456L13_2631 at 2930.858 kb on - strand, within PfGW456L13_2631 at 2931.041 kb on - strand at 2931.066 kb on + strand at 2931.066 kb on + strand at 2931.071 kb on - strand at 2931.089 kb on - strand at 2931.089 kb on - strand at 2931.114 kb on + strand at 2931.115 kb on - strand at 2931.115 kb on - strand at 2931.220 kb on + strand, within PfGW456L13_2632 at 2931.383 kb on - strand, within PfGW456L13_2632 at 2931.604 kb on + strand, within PfGW456L13_2632 at 2931.628 kb on + strand, within PfGW456L13_2632 at 2931.723 kb on + strand, within PfGW456L13_2632 at 2931.889 kb on + strand at 2931.890 kb on - strand at 2931.893 kb on + strand at 2931.920 kb on - strand at 2932.071 kb on + strand at 2932.075 kb on + strand at 2932.326 kb on + strand at 2932.371 kb on + strand at 2932.388 kb on - strand at 2932.448 kb on + strand at 2932.466 kb on + strand at 2932.467 kb on - strand at 2932.475 kb on + strand at 2932.475 kb on + strand at 2932.475 kb on + strand at 2932.475 kb on + strand at 2932.475 kb on + strand at 2932.475 kb on + strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.518 kb on + strand at 2932.527 kb on + strand at 2932.555 kb on + strand at 2932.555 kb on + strand at 2932.555 kb on + strand at 2932.555 kb on + strand at 2932.555 kb on + strand at 2932.555 kb on + strand at 2932.555 kb on + strand at 2932.556 kb on - strand at 2932.556 kb on - strand at 2932.556 kb on - strand at 2932.556 kb on - strand at 2932.556 kb on - strand at 2932.556 kb on - strand at 2932.556 kb on - strand at 2932.557 kb on + strand at 2932.557 kb on + strand at 2932.557 kb on + strand at 2932.557 kb on + strand at 2932.557 kb on + strand at 2932.558 kb on - strand at 2932.558 kb on - strand at 2932.558 kb on - strand at 2932.567 kb on - strand at 2932.575 kb on + strand at 2932.576 kb on - strand at 2932.615 kb on + strand at 2932.753 kb on + strand at 2932.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,930,779 + PfGW456L13_2631 0.84 -0.4 2,930,780 - PfGW456L13_2631 0.84 +0.0 2,930,858 - PfGW456L13_2631 0.89 +0.0 2,931,041 - -2.3 2,931,066 + -2.5 2,931,066 + +0.0 2,931,071 - +1.4 2,931,089 - +0.8 2,931,089 - +0.6 2,931,114 + -2.2 2,931,115 - +1.0 2,931,115 - -1.0 2,931,220 + PfGW456L13_2632 0.13 +0.0 2,931,383 - PfGW456L13_2632 0.37 +0.6 2,931,604 + PfGW456L13_2632 0.69 -2.0 2,931,628 + PfGW456L13_2632 0.73 +0.0 2,931,723 + PfGW456L13_2632 0.87 +0.0 2,931,889 + +0.6 2,931,890 - -0.1 2,931,893 + -1.0 2,931,920 - -0.5 2,932,071 + -0.4 2,932,075 + -1.7 2,932,326 + +0.4 2,932,371 + -0.2 2,932,388 - -2.4 2,932,448 + +0.9 2,932,466 + -0.1 2,932,467 - -0.7 2,932,475 + +0.6 2,932,475 + -1.6 2,932,475 + -0.2 2,932,475 + +0.5 2,932,475 + -0.2 2,932,475 + -0.5 2,932,476 - -0.2 2,932,476 - +0.8 2,932,476 - -0.1 2,932,476 - -0.2 2,932,476 - -0.5 2,932,518 + +0.2 2,932,527 + -0.2 2,932,555 + -0.6 2,932,555 + +0.4 2,932,555 + -1.0 2,932,555 + +0.4 2,932,555 + -1.5 2,932,555 + -0.2 2,932,555 + +0.2 2,932,556 - +1.6 2,932,556 - +0.6 2,932,556 - +2.2 2,932,556 - +0.6 2,932,556 - -1.4 2,932,556 - -0.2 2,932,556 - -1.7 2,932,557 + -0.1 2,932,557 + +0.1 2,932,557 + -1.6 2,932,557 + +0.4 2,932,557 + -0.1 2,932,558 - -0.2 2,932,558 - +1.4 2,932,558 - -1.7 2,932,567 - +1.1 2,932,575 + +0.4 2,932,576 - -0.1 2,932,615 + -1.8 2,932,753 + -0.6 2,932,754 - +1.2
Or see this region's nucleotide sequence