Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2622 and PfGW456L13_2623 are separated by 39 nucleotides PfGW456L13_2623 and PfGW456L13_2624 overlap by 4 nucleotides PfGW456L13_2624 and PfGW456L13_2625 are separated by 2 nucleotides PfGW456L13_2625 and PfGW456L13_2626 are separated by 9 nucleotides
PfGW456L13_2622 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 2,918,768 to 2,920,300
_2622
PfGW456L13_2623 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 2,920,340 to 2,922,193
_2623
PfGW456L13_2624 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 2,922,190 to 2,922,498
_2624
PfGW456L13_2625 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 2,922,501 to 2,923,004
_2625
PfGW456L13_2626 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 2,923,014 to 2,923,559
_2626
Position (kb)
2920
2921
2922
2923 Strain fitness (log2 ratio)
-2
-1
0
1 at 2919.717 kb on - strand, within PfGW456L13_2622 at 2919.847 kb on - strand, within PfGW456L13_2622 at 2920.404 kb on + strand at 2920.754 kb on + strand, within PfGW456L13_2623 at 2921.715 kb on + strand, within PfGW456L13_2623 at 2921.950 kb on - strand, within PfGW456L13_2623 at 2923.092 kb on - strand, within PfGW456L13_2626 at 2923.092 kb on - strand, within PfGW456L13_2626 at 2923.092 kb on - strand, within PfGW456L13_2626 at 2923.105 kb on + strand, within PfGW456L13_2626
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,919,717 - PfGW456L13_2622 0.62 -2.0 2,919,847 - PfGW456L13_2622 0.70 -0.4 2,920,404 + -1.2 2,920,754 + PfGW456L13_2623 0.22 -2.7 2,921,715 + PfGW456L13_2623 0.74 -1.5 2,921,950 - PfGW456L13_2623 0.87 -0.4 2,923,092 - PfGW456L13_2626 0.14 +1.6 2,923,092 - PfGW456L13_2626 0.14 +0.4 2,923,092 - PfGW456L13_2626 0.14 -1.4 2,923,105 + PfGW456L13_2626 0.17 -0.7
Or see this region's nucleotide sequence