Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2602 and PfGW456L13_2603 are separated by 237 nucleotides PfGW456L13_2603 and PfGW456L13_2604 are separated by 11 nucleotides
PfGW456L13_2602 - putative exported protein, at 2,891,638 to 2,895,276
_2602
PfGW456L13_2603 - Transcriptional regulator, MarR family, at 2,895,514 to 2,895,987
_2603
PfGW456L13_2604 - Outer membrane component of tripartite multidrug resistance system, at 2,895,999 to 2,897,453
_2604
Position (kb)
2895
2896 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2894.803 kb on + strand, within PfGW456L13_2602 at 2894.932 kb on + strand at 2894.933 kb on - strand at 2894.933 kb on - strand at 2894.933 kb on - strand at 2895.018 kb on + strand at 2895.019 kb on - strand at 2895.019 kb on - strand at 2895.019 kb on - strand at 2895.124 kb on - strand at 2895.124 kb on - strand at 2895.124 kb on - strand at 2895.124 kb on - strand at 2895.178 kb on - strand at 2895.178 kb on - strand at 2895.215 kb on - strand at 2895.259 kb on + strand at 2895.259 kb on + strand at 2895.260 kb on - strand at 2895.260 kb on - strand at 2895.274 kb on + strand at 2895.275 kb on - strand at 2895.275 kb on - strand at 2895.417 kb on + strand at 2895.433 kb on + strand at 2895.434 kb on - strand at 2895.434 kb on - strand at 2895.437 kb on + strand at 2895.437 kb on + strand at 2895.437 kb on + strand at 2895.437 kb on + strand at 2895.438 kb on - strand at 2895.460 kb on - strand at 2895.467 kb on - strand at 2895.492 kb on + strand at 2895.500 kb on + strand at 2895.500 kb on + strand at 2895.501 kb on - strand at 2895.692 kb on + strand, within PfGW456L13_2603 at 2895.693 kb on - strand, within PfGW456L13_2603 at 2895.974 kb on + strand at 2895.975 kb on - strand at 2895.993 kb on - strand at 2896.056 kb on + strand at 2896.380 kb on + strand, within PfGW456L13_2604 at 2896.381 kb on - strand, within PfGW456L13_2604 at 2896.416 kb on + strand, within PfGW456L13_2604 at 2896.539 kb on + strand, within PfGW456L13_2604 at 2896.539 kb on + strand, within PfGW456L13_2604 at 2896.539 kb on + strand at 2896.540 kb on - strand, within PfGW456L13_2604 at 2896.540 kb on - strand, within PfGW456L13_2604 at 2896.540 kb on - strand, within PfGW456L13_2604 at 2896.540 kb on - strand, within PfGW456L13_2604 at 2896.657 kb on - strand, within PfGW456L13_2604 at 2896.829 kb on - strand, within PfGW456L13_2604 at 2896.938 kb on + strand, within PfGW456L13_2604 at 2896.938 kb on + strand, within PfGW456L13_2604 at 2896.939 kb on - strand, within PfGW456L13_2604
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,894,803 + PfGW456L13_2602 0.87 -0.2 2,894,932 + -0.0 2,894,933 - -0.4 2,894,933 - +1.3 2,894,933 - -0.2 2,895,018 + -0.0 2,895,019 - -0.8 2,895,019 - -0.6 2,895,019 - +1.1 2,895,124 - -0.4 2,895,124 - -0.8 2,895,124 - -0.1 2,895,124 - -0.2 2,895,178 - -0.3 2,895,178 - -0.3 2,895,215 - +0.9 2,895,259 + +0.1 2,895,259 + -0.2 2,895,260 - +0.6 2,895,260 - -0.0 2,895,274 + +0.1 2,895,275 - +1.3 2,895,275 - +0.1 2,895,417 + +1.0 2,895,433 + +0.6 2,895,434 - -1.7 2,895,434 - +0.8 2,895,437 + +2.9 2,895,437 + +0.6 2,895,437 + -1.0 2,895,437 + -0.4 2,895,438 - +0.4 2,895,460 - +0.3 2,895,467 - -0.7 2,895,492 + -1.0 2,895,500 + -2.4 2,895,500 + -0.5 2,895,501 - +1.1 2,895,692 + PfGW456L13_2603 0.38 -0.6 2,895,693 - PfGW456L13_2603 0.38 -0.4 2,895,974 + +0.1 2,895,975 - +0.9 2,895,993 - +0.6 2,896,056 + +0.4 2,896,380 + PfGW456L13_2604 0.26 +1.0 2,896,381 - PfGW456L13_2604 0.26 +0.8 2,896,416 + PfGW456L13_2604 0.29 -0.9 2,896,539 + PfGW456L13_2604 0.37 -1.5 2,896,539 + PfGW456L13_2604 0.37 +1.4 2,896,539 + -0.4 2,896,540 - PfGW456L13_2604 0.37 -0.4 2,896,540 - PfGW456L13_2604 0.37 +0.8 2,896,540 - PfGW456L13_2604 0.37 -0.1 2,896,540 - PfGW456L13_2604 0.37 +0.6 2,896,657 - PfGW456L13_2604 0.45 -0.3 2,896,829 - PfGW456L13_2604 0.57 +0.7 2,896,938 + PfGW456L13_2604 0.65 -0.5 2,896,938 + PfGW456L13_2604 0.65 -0.4 2,896,939 - PfGW456L13_2604 0.65 +0.2
Or see this region's nucleotide sequence