Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2554 and PfGW456L13_2555 are separated by 149 nucleotides PfGW456L13_2555 and PfGW456L13_2556 are separated by 235 nucleotides PfGW456L13_2556 and PfGW456L13_2557 are separated by 203 nucleotides
PfGW456L13_2554 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 2,822,544 to 2,824,940
_2554
PfGW456L13_2555 - DNA-binding protein HU-beta, at 2,825,090 to 2,825,362
_2555
PfGW456L13_2556 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 2,825,598 to 2,827,469
_2556
PfGW456L13_2557 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 2,827,673 to 2,828,536
_2557
Position (kb)
2825
2826
2827
2828 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2824.778 kb on + strand at 2824.778 kb on + strand at 2824.792 kb on + strand at 2824.792 kb on + strand at 2824.845 kb on + strand at 2824.928 kb on + strand at 2824.938 kb on + strand at 2824.941 kb on + strand at 2824.945 kb on + strand at 2824.945 kb on + strand at 2824.945 kb on + strand at 2824.977 kb on + strand at 2824.977 kb on + strand at 2824.989 kb on + strand at 2824.991 kb on + strand at 2825.003 kb on + strand at 2825.003 kb on + strand at 2825.074 kb on + strand at 2825.074 kb on + strand at 2825.074 kb on + strand at 2825.074 kb on + strand at 2825.076 kb on + strand at 2825.076 kb on + strand at 2825.076 kb on + strand at 2825.086 kb on + strand at 2825.360 kb on + strand at 2825.543 kb on + strand at 2825.543 kb on + strand at 2825.645 kb on + strand at 2825.645 kb on + strand at 2826.131 kb on - strand, within PfGW456L13_2556 at 2826.235 kb on - strand, within PfGW456L13_2556 at 2826.237 kb on + strand, within PfGW456L13_2556 at 2826.238 kb on - strand, within PfGW456L13_2556 at 2826.288 kb on + strand, within PfGW456L13_2556 at 2826.561 kb on + strand, within PfGW456L13_2556 at 2827.377 kb on + strand at 2827.386 kb on + strand at 2827.386 kb on + strand at 2827.425 kb on + strand at 2827.485 kb on - strand at 2827.537 kb on + strand at 2827.537 kb on + strand at 2827.538 kb on - strand at 2827.538 kb on - strand at 2827.589 kb on - strand at 2827.597 kb on + strand at 2827.641 kb on + strand at 2827.642 kb on - strand at 2827.642 kb on - strand at 2827.678 kb on + strand at 2827.678 kb on + strand at 2827.678 kb on + strand at 2827.679 kb on - strand at 2827.679 kb on - strand at 2827.723 kb on + strand at 2827.724 kb on - strand at 2827.724 kb on - strand at 2827.724 kb on - strand at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.760 kb on + strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.761 kb on - strand, within PfGW456L13_2557 at 2827.789 kb on + strand, within PfGW456L13_2557 at 2827.806 kb on - strand, within PfGW456L13_2557 at 2827.806 kb on - strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.865 kb on + strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.866 kb on - strand, within PfGW456L13_2557 at 2827.964 kb on - strand, within PfGW456L13_2557 at 2828.156 kb on + strand, within PfGW456L13_2557 at 2828.156 kb on + strand, within PfGW456L13_2557 at 2828.157 kb on - strand, within PfGW456L13_2557 at 2828.311 kb on - strand, within PfGW456L13_2557 at 2828.311 kb on - strand, within PfGW456L13_2557 at 2828.433 kb on + strand, within PfGW456L13_2557 at 2828.433 kb on + strand, within PfGW456L13_2557
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,824,778 + -0.0 2,824,778 + -0.5 2,824,792 + +0.5 2,824,792 + -0.2 2,824,845 + -0.7 2,824,928 + -0.5 2,824,938 + -0.6 2,824,941 + -0.1 2,824,945 + +0.4 2,824,945 + -0.4 2,824,945 + +0.5 2,824,977 + -0.6 2,824,977 + -1.5 2,824,989 + +0.0 2,824,991 + -0.3 2,825,003 + -0.0 2,825,003 + -0.0 2,825,074 + +0.1 2,825,074 + +1.1 2,825,074 + -1.4 2,825,074 + -0.4 2,825,076 + -0.6 2,825,076 + +0.6 2,825,076 + -0.4 2,825,086 + +1.6 2,825,360 + -1.0 2,825,543 + +0.0 2,825,543 + -0.0 2,825,645 + -1.3 2,825,645 + -2.1 2,826,131 - PfGW456L13_2556 0.28 -2.7 2,826,235 - PfGW456L13_2556 0.34 -1.8 2,826,237 + PfGW456L13_2556 0.34 -0.4 2,826,238 - PfGW456L13_2556 0.34 -2.0 2,826,288 + PfGW456L13_2556 0.37 -0.8 2,826,561 + PfGW456L13_2556 0.51 +1.4 2,827,377 + -1.7 2,827,386 + +0.0 2,827,386 + -0.6 2,827,425 + +0.2 2,827,485 - -0.7 2,827,537 + -2.7 2,827,537 + -2.7 2,827,538 - +1.0 2,827,538 - +0.1 2,827,589 - -0.9 2,827,597 + -1.6 2,827,641 + -1.7 2,827,642 - +0.6 2,827,642 - +0.5 2,827,678 + -0.2 2,827,678 + +0.6 2,827,678 + +0.0 2,827,679 - +0.4 2,827,679 - +2.0 2,827,723 + +2.2 2,827,724 - +0.6 2,827,724 - -1.0 2,827,724 - +1.0 2,827,760 + PfGW456L13_2557 0.10 +0.3 2,827,760 + PfGW456L13_2557 0.10 +0.2 2,827,760 + PfGW456L13_2557 0.10 +0.6 2,827,760 + PfGW456L13_2557 0.10 +1.1 2,827,760 + PfGW456L13_2557 0.10 +0.5 2,827,760 + PfGW456L13_2557 0.10 +0.8 2,827,760 + PfGW456L13_2557 0.10 -0.6 2,827,760 + PfGW456L13_2557 0.10 +0.6 2,827,760 + PfGW456L13_2557 0.10 -0.4 2,827,761 - PfGW456L13_2557 0.10 +1.2 2,827,761 - PfGW456L13_2557 0.10 +0.1 2,827,761 - PfGW456L13_2557 0.10 +0.4 2,827,761 - PfGW456L13_2557 0.10 +1.1 2,827,761 - PfGW456L13_2557 0.10 +1.3 2,827,761 - PfGW456L13_2557 0.10 +0.2 2,827,761 - PfGW456L13_2557 0.10 -0.0 2,827,789 + PfGW456L13_2557 0.13 +1.3 2,827,806 - PfGW456L13_2557 0.15 +1.9 2,827,806 - PfGW456L13_2557 0.15 +2.4 2,827,865 + PfGW456L13_2557 0.22 +0.5 2,827,865 + PfGW456L13_2557 0.22 +1.6 2,827,865 + PfGW456L13_2557 0.22 +1.9 2,827,865 + PfGW456L13_2557 0.22 -0.5 2,827,865 + PfGW456L13_2557 0.22 +1.3 2,827,865 + PfGW456L13_2557 0.22 -0.2 2,827,865 + PfGW456L13_2557 0.22 -1.1 2,827,865 + PfGW456L13_2557 0.22 +0.2 2,827,866 - PfGW456L13_2557 0.22 +1.0 2,827,866 - PfGW456L13_2557 0.22 +0.5 2,827,866 - PfGW456L13_2557 0.22 +0.9 2,827,866 - PfGW456L13_2557 0.22 +0.4 2,827,866 - PfGW456L13_2557 0.22 -0.1 2,827,866 - PfGW456L13_2557 0.22 +0.5 2,827,866 - PfGW456L13_2557 0.22 +1.3 2,827,866 - PfGW456L13_2557 0.22 +1.2 2,827,866 - PfGW456L13_2557 0.22 +0.3 2,827,964 - PfGW456L13_2557 0.34 +0.7 2,828,156 + PfGW456L13_2557 0.56 +0.8 2,828,156 + PfGW456L13_2557 0.56 -0.3 2,828,157 - PfGW456L13_2557 0.56 +1.6 2,828,311 - PfGW456L13_2557 0.74 +1.3 2,828,311 - PfGW456L13_2557 0.74 -0.3 2,828,433 + PfGW456L13_2557 0.88 -0.7 2,828,433 + PfGW456L13_2557 0.88 +1.9
Or see this region's nucleotide sequence