Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_236

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_234 and PfGW456L13_235 overlap by 25 nucleotidesPfGW456L13_235 and PfGW456L13_236 overlap by 23 nucleotidesPfGW456L13_236 and PfGW456L13_237 are separated by 9 nucleotidesPfGW456L13_237 and PfGW456L13_238 overlap by 4 nucleotidesPfGW456L13_238 and PfGW456L13_239 overlap by 4 nucleotides PfGW456L13_234 - 3-oxoacyl-[ACP] synthase, at 279,822 to 280,541 _234 PfGW456L13_235 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 280,517 to 281,329 _235 PfGW456L13_236 - Acyl carrier protein (ACP1), at 281,307 to 281,582 _236 PfGW456L13_237 - Acyl carrier protein, at 281,592 to 281,846 _237 PfGW456L13_238 - FIG017861: hypothetical protein, at 281,843 to 282,388 _238 PfGW456L13_239 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 282,385 to 284,064 _239 Position (kb) 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 280.356 kb on + strand, within PfGW456L13_234at 280.357 kb on - strand, within PfGW456L13_234at 280.357 kb on - strand, within PfGW456L13_234at 280.516 kb on + strandat 280.517 kb on - strandat 280.517 kb on - strandat 280.562 kb on + strandat 280.562 kb on + strandat 280.562 kb on + strandat 280.562 kb on + strandat 280.563 kb on - strandat 280.563 kb on - strandat 280.566 kb on - strandat 280.647 kb on + strand, within PfGW456L13_235at 280.648 kb on - strand, within PfGW456L13_235at 280.760 kb on + strand, within PfGW456L13_235at 280.760 kb on + strand, within PfGW456L13_235at 280.760 kb on + strand, within PfGW456L13_235at 280.760 kb on + strand, within PfGW456L13_235at 280.760 kb on + strand, within PfGW456L13_235at 280.760 kb on + strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.761 kb on - strand, within PfGW456L13_235at 280.762 kb on + strand, within PfGW456L13_235at 280.762 kb on + strand, within PfGW456L13_235at 280.762 kb on + strand, within PfGW456L13_235at 280.763 kb on - strand, within PfGW456L13_235at 280.763 kb on - strand, within PfGW456L13_235at 280.763 kb on - strand, within PfGW456L13_235at 280.763 kb on - strand, within PfGW456L13_235at 280.763 kb on - strand, within PfGW456L13_235at 280.763 kb on - strand, within PfGW456L13_235at 280.934 kb on + strand, within PfGW456L13_235at 280.934 kb on + strand, within PfGW456L13_235at 280.934 kb on + strand, within PfGW456L13_235at 280.934 kb on + strand, within PfGW456L13_235at 280.934 kb on + strand, within PfGW456L13_235at 280.935 kb on - strand, within PfGW456L13_235at 280.935 kb on - strand, within PfGW456L13_235at 281.206 kb on + strand, within PfGW456L13_235at 281.207 kb on - strand, within PfGW456L13_235at 281.208 kb on + strand, within PfGW456L13_235at 281.208 kb on + strand, within PfGW456L13_235at 281.209 kb on - strand, within PfGW456L13_235at 281.270 kb on + strandat 281.282 kb on + strandat 281.282 kb on + strandat 281.282 kb on + strandat 281.282 kb on + strandat 281.282 kb on + strandat 281.283 kb on - strandat 281.283 kb on - strandat 281.283 kb on - strandat 281.283 kb on - strandat 281.283 kb on - strandat 281.484 kb on + strand, within PfGW456L13_236at 281.485 kb on - strand, within PfGW456L13_236at 281.535 kb on - strand, within PfGW456L13_236at 281.689 kb on - strand, within PfGW456L13_237at 281.877 kb on + strandat 281.877 kb on + strandat 281.878 kb on - strandat 281.878 kb on - strandat 281.889 kb on - strandat 281.903 kb on + strand, within PfGW456L13_238at 281.903 kb on + strand, within PfGW456L13_238at 282.201 kb on - strand, within PfGW456L13_238at 282.201 kb on - strand, within PfGW456L13_238at 282.201 kb on - strand, within PfGW456L13_238at 282.201 kb on - strand, within PfGW456L13_238at 282.202 kb on + strand, within PfGW456L13_238at 282.303 kb on - strand, within PfGW456L13_238at 282.303 kb on - strand, within PfGW456L13_238at 282.330 kb on + strand, within PfGW456L13_238at 282.330 kb on + strand, within PfGW456L13_238at 282.331 kb on - strand, within PfGW456L13_238at 282.360 kb on + strandat 282.360 kb on + strandat 282.361 kb on - strandat 282.366 kb on + strandat 282.372 kb on + strandat 282.373 kb on - strandat 282.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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280,356 + PfGW456L13_234 0.74 +0.1
280,357 - PfGW456L13_234 0.74 +0.7
280,357 - PfGW456L13_234 0.74 -2.1
280,516 + -0.4
280,517 - -0.4
280,517 - -0.1
280,562 + +0.4
280,562 + +0.1
280,562 + -0.3
280,562 + +0.2
280,563 - +0.3
280,563 - +0.2
280,566 - -0.0
280,647 + PfGW456L13_235 0.16 +0.6
280,648 - PfGW456L13_235 0.16 -0.5
280,760 + PfGW456L13_235 0.30 -0.5
280,760 + PfGW456L13_235 0.30 +0.3
280,760 + PfGW456L13_235 0.30 +0.1
280,760 + PfGW456L13_235 0.30 -0.0
280,760 + PfGW456L13_235 0.30 +1.3
280,760 + PfGW456L13_235 0.30 +0.1
280,761 - PfGW456L13_235 0.30 -0.7
280,761 - PfGW456L13_235 0.30 +0.1
280,761 - PfGW456L13_235 0.30 -0.4
280,761 - PfGW456L13_235 0.30 +0.6
280,761 - PfGW456L13_235 0.30 +0.7
280,761 - PfGW456L13_235 0.30 +0.1
280,761 - PfGW456L13_235 0.30 -0.5
280,762 + PfGW456L13_235 0.30 -0.2
280,762 + PfGW456L13_235 0.30 +0.5
280,762 + PfGW456L13_235 0.30 -2.0
280,763 - PfGW456L13_235 0.30 -0.7
280,763 - PfGW456L13_235 0.30 +0.0
280,763 - PfGW456L13_235 0.30 +0.3
280,763 - PfGW456L13_235 0.30 +0.0
280,763 - PfGW456L13_235 0.30 -0.3
280,763 - PfGW456L13_235 0.30 +0.5
280,934 + PfGW456L13_235 0.51 -0.6
280,934 + PfGW456L13_235 0.51 +1.1
280,934 + PfGW456L13_235 0.51 -0.8
280,934 + PfGW456L13_235 0.51 +0.5
280,934 + PfGW456L13_235 0.51 -0.5
280,935 - PfGW456L13_235 0.51 -0.1
280,935 - PfGW456L13_235 0.51 +2.5
281,206 + PfGW456L13_235 0.85 -0.7
281,207 - PfGW456L13_235 0.85 -0.0
281,208 + PfGW456L13_235 0.85 +0.0
281,208 + PfGW456L13_235 0.85 -0.6
281,209 - PfGW456L13_235 0.85 +0.1
281,270 + -1.2
281,282 + +0.5
281,282 + +1.3
281,282 + -0.4
281,282 + +0.9
281,282 + +1.0
281,283 - +1.2
281,283 - +0.6
281,283 - +0.2
281,283 - -0.2
281,283 - +0.6
281,484 + PfGW456L13_236 0.64 -0.4
281,485 - PfGW456L13_236 0.64 -0.7
281,535 - PfGW456L13_236 0.83 -0.5
281,689 - PfGW456L13_237 0.38 +0.7
281,877 + +0.6
281,877 + +0.4
281,878 - +1.2
281,878 - -0.0
281,889 - +0.0
281,903 + PfGW456L13_238 0.11 +0.5
281,903 + PfGW456L13_238 0.11 +0.3
282,201 - PfGW456L13_238 0.66 +1.9
282,201 - PfGW456L13_238 0.66 -1.7
282,201 - PfGW456L13_238 0.66 -0.2
282,201 - PfGW456L13_238 0.66 +0.2
282,202 + PfGW456L13_238 0.66 +0.7
282,303 - PfGW456L13_238 0.84 +0.9
282,303 - PfGW456L13_238 0.84 -0.1
282,330 + PfGW456L13_238 0.89 +0.2
282,330 + PfGW456L13_238 0.89 -0.1
282,331 - PfGW456L13_238 0.89 -0.1
282,360 + -1.4
282,360 + -0.9
282,361 - -0.7
282,366 + -0.7
282,372 + +0.4
282,373 - +0.8
282,396 - +0.2

Or see this region's nucleotide sequence