Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2175 and PfGW456L13_2176 overlap by 1 nucleotides PfGW456L13_2176 and PfGW456L13_2177 are separated by 13 nucleotides
PfGW456L13_2175 - Phosphoserine aminotransferase (EC 2.6.1.52), at 2,382,720 to 2,383,811
_2175
PfGW456L13_2176 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 2,383,811 to 2,384,905
_2176
PfGW456L13_2177 - Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57), at 2,384,919 to 2,386,031
_2177
Position (kb)
2383
2384
2385 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2383.961 kb on + strand, within PfGW456L13_2176 at 2383.961 kb on + strand, within PfGW456L13_2176 at 2383.961 kb on + strand, within PfGW456L13_2176 at 2383.961 kb on + strand, within PfGW456L13_2176 at 2384.102 kb on + strand, within PfGW456L13_2176 at 2384.102 kb on + strand, within PfGW456L13_2176 at 2384.102 kb on + strand, within PfGW456L13_2176 at 2384.593 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.780 kb on + strand, within PfGW456L13_2176 at 2384.903 kb on + strand at 2384.973 kb on + strand at 2384.973 kb on + strand at 2385.032 kb on + strand, within PfGW456L13_2177 at 2385.032 kb on + strand, within PfGW456L13_2177 at 2385.243 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.516 kb on + strand, within PfGW456L13_2177 at 2385.639 kb on + strand, within PfGW456L13_2177 at 2385.682 kb on + strand, within PfGW456L13_2177 at 2385.750 kb on + strand, within PfGW456L13_2177 at 2385.750 kb on + strand, within PfGW456L13_2177 at 2385.750 kb on + strand, within PfGW456L13_2177
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,383,961 + PfGW456L13_2176 0.14 -0.4 2,383,961 + PfGW456L13_2176 0.14 -0.2 2,383,961 + PfGW456L13_2176 0.14 -2.4 2,383,961 + PfGW456L13_2176 0.14 -2.8 2,384,102 + PfGW456L13_2176 0.27 -0.9 2,384,102 + PfGW456L13_2176 0.27 -1.1 2,384,102 + PfGW456L13_2176 0.27 -1.5 2,384,593 + PfGW456L13_2176 0.71 -1.2 2,384,780 + PfGW456L13_2176 0.88 -0.9 2,384,780 + PfGW456L13_2176 0.88 -0.0 2,384,780 + PfGW456L13_2176 0.88 -1.3 2,384,780 + PfGW456L13_2176 0.88 -1.6 2,384,780 + PfGW456L13_2176 0.88 -1.1 2,384,780 + PfGW456L13_2176 0.88 -0.8 2,384,780 + PfGW456L13_2176 0.88 -1.9 2,384,780 + PfGW456L13_2176 0.88 -1.5 2,384,780 + PfGW456L13_2176 0.88 -1.9 2,384,780 + PfGW456L13_2176 0.88 -0.4 2,384,780 + PfGW456L13_2176 0.88 -0.2 2,384,903 + +1.5 2,384,973 + +0.1 2,384,973 + -0.7 2,385,032 + PfGW456L13_2177 0.10 +1.6 2,385,032 + PfGW456L13_2177 0.10 -0.2 2,385,243 + PfGW456L13_2177 0.29 -0.9 2,385,516 + PfGW456L13_2177 0.54 +1.1 2,385,516 + PfGW456L13_2177 0.54 +0.6 2,385,516 + PfGW456L13_2177 0.54 -0.7 2,385,516 + PfGW456L13_2177 0.54 +0.9 2,385,516 + PfGW456L13_2177 0.54 +0.6 2,385,516 + PfGW456L13_2177 0.54 -1.0 2,385,516 + PfGW456L13_2177 0.54 -0.0 2,385,516 + PfGW456L13_2177 0.54 +2.1 2,385,516 + PfGW456L13_2177 0.54 +1.1 2,385,639 + PfGW456L13_2177 0.65 +0.2 2,385,682 + PfGW456L13_2177 0.69 +0.6 2,385,750 + PfGW456L13_2177 0.75 +0.6 2,385,750 + PfGW456L13_2177 0.75 +0.1 2,385,750 + PfGW456L13_2177 0.75 -0.9
Or see this region's nucleotide sequence