Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_207

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_206 and PfGW456L13_207 overlap by 1 nucleotidesPfGW456L13_207 and PfGW456L13_208 overlap by 4 nucleotidesPfGW456L13_208 and PfGW456L13_209 overlap by 1 nucleotides PfGW456L13_206 - serine/threonine protein kinase, at 236,091 to 237,542 _206 PfGW456L13_207 - InaA protein, at 237,542 to 238,294 _207 PfGW456L13_208 - Heptose kinase WapQ, eukaryotic type, at 238,291 to 239,025 _208 PfGW456L13_209 - Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase, at 239,025 to 239,831 _209 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1at 237.721 kb on - strand, within PfGW456L13_207at 237.721 kb on - strand, within PfGW456L13_207at 237.997 kb on - strand, within PfGW456L13_207at 237.997 kb on - strand, within PfGW456L13_207at 238.108 kb on - strand, within PfGW456L13_207at 238.108 kb on - strand, within PfGW456L13_207at 238.108 kb on - strand, within PfGW456L13_207at 238.535 kb on - strand, within PfGW456L13_208at 239.052 kb on - strandat 239.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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237,721 - PfGW456L13_207 0.24 -1.0
237,721 - PfGW456L13_207 0.24 -1.5
237,997 - PfGW456L13_207 0.60 -1.5
237,997 - PfGW456L13_207 0.60 -1.5
238,108 - PfGW456L13_207 0.75 -1.8
238,108 - PfGW456L13_207 0.75 -1.7
238,108 - PfGW456L13_207 0.75 -2.1
238,535 - PfGW456L13_208 0.33 -0.1
239,052 - +0.5
239,052 - -0.3

Or see this region's nucleotide sequence