Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2009 and PfGW456L13_2010 are separated by 233 nucleotides PfGW456L13_2010 and PfGW456L13_2011 are separated by 120 nucleotides PfGW456L13_2011 and PfGW456L13_2012 overlap by 4 nucleotides
PfGW456L13_2009 - 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-); Holo-[acyl-carrier protein] synthase, alternative (EC 2.7.8.7), at 2,213,562 to 2,214,287
_2009
PfGW456L13_2010 - outer membrane protein H1, at 2,214,521 to 2,215,123
_2010
PfGW456L13_2011 - Transcriptional regulatory protein PhoP, at 2,215,244 to 2,215,921
_2011
PfGW456L13_2012 - Sensor protein PhoQ (EC 2.7.13.3), at 2,215,918 to 2,217,264
_2012
Position (kb)
2215
2216 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2214.287 kb on + strand at 2214.288 kb on - strand at 2214.288 kb on - strand at 2214.323 kb on - strand at 2214.348 kb on - strand at 2214.610 kb on + strand, within PfGW456L13_2010 at 2214.610 kb on + strand, within PfGW456L13_2010 at 2214.611 kb on - strand, within PfGW456L13_2010 at 2214.611 kb on - strand, within PfGW456L13_2010 at 2214.611 kb on - strand, within PfGW456L13_2010 at 2214.637 kb on + strand, within PfGW456L13_2010 at 2214.752 kb on + strand, within PfGW456L13_2010 at 2214.752 kb on + strand, within PfGW456L13_2010 at 2214.752 kb on + strand, within PfGW456L13_2010 at 2214.752 kb on + strand, within PfGW456L13_2010 at 2214.753 kb on - strand, within PfGW456L13_2010 at 2214.761 kb on + strand, within PfGW456L13_2010 at 2214.761 kb on + strand, within PfGW456L13_2010 at 2214.761 kb on + strand, within PfGW456L13_2010 at 2214.761 kb on + strand, within PfGW456L13_2010 at 2214.762 kb on - strand, within PfGW456L13_2010 at 2214.762 kb on - strand, within PfGW456L13_2010 at 2214.824 kb on + strand, within PfGW456L13_2010 at 2214.824 kb on + strand, within PfGW456L13_2010 at 2214.824 kb on + strand, within PfGW456L13_2010 at 2214.825 kb on - strand, within PfGW456L13_2010 at 2214.825 kb on - strand, within PfGW456L13_2010 at 2214.836 kb on + strand, within PfGW456L13_2010 at 2215.004 kb on + strand, within PfGW456L13_2010 at 2215.011 kb on - strand, within PfGW456L13_2010 at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.097 kb on + strand at 2215.098 kb on - strand at 2215.098 kb on - strand at 2215.098 kb on - strand at 2215.112 kb on + strand at 2215.186 kb on + strand at 2215.186 kb on + strand at 2215.186 kb on + strand at 2215.187 kb on - strand at 2215.212 kb on + strand at 2215.213 kb on - strand at 2215.535 kb on + strand, within PfGW456L13_2011 at 2215.535 kb on + strand, within PfGW456L13_2011 at 2215.535 kb on + strand, within PfGW456L13_2011 at 2215.536 kb on - strand, within PfGW456L13_2011 at 2215.536 kb on - strand, within PfGW456L13_2011 at 2215.700 kb on + strand, within PfGW456L13_2011 at 2215.701 kb on - strand, within PfGW456L13_2011 at 2215.701 kb on - strand, within PfGW456L13_2011 at 2215.721 kb on + strand, within PfGW456L13_2011 at 2215.721 kb on + strand, within PfGW456L13_2011 at 2215.722 kb on - strand, within PfGW456L13_2011 at 2215.722 kb on - strand, within PfGW456L13_2011 at 2215.937 kb on + strand at 2215.937 kb on + strand at 2215.937 kb on + strand at 2216.164 kb on + strand, within PfGW456L13_2012 at 2216.165 kb on - strand, within PfGW456L13_2012 at 2216.166 kb on + strand, within PfGW456L13_2012 at 2216.166 kb on + strand, within PfGW456L13_2012 at 2216.166 kb on + strand, within PfGW456L13_2012 at 2216.166 kb on + strand, within PfGW456L13_2012 at 2216.167 kb on - strand, within PfGW456L13_2012 at 2216.167 kb on - strand, within PfGW456L13_2012 at 2216.167 kb on - strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.170 kb on + strand, within PfGW456L13_2012 at 2216.171 kb on - strand, within PfGW456L13_2012 at 2216.171 kb on - strand, within PfGW456L13_2012 at 2216.171 kb on - strand, within PfGW456L13_2012 at 2216.171 kb on - strand, within PfGW456L13_2012 at 2216.171 kb on - strand, within PfGW456L13_2012 at 2216.230 kb on + strand, within PfGW456L13_2012 at 2216.230 kb on + strand, within PfGW456L13_2012 at 2216.231 kb on - strand, within PfGW456L13_2012 at 2216.231 kb on - strand, within PfGW456L13_2012 at 2216.416 kb on + strand, within PfGW456L13_2012 at 2216.417 kb on - strand, within PfGW456L13_2012 at 2216.417 kb on - strand, within PfGW456L13_2012 at 2216.607 kb on + strand, within PfGW456L13_2012 at 2216.607 kb on + strand, within PfGW456L13_2012 at 2216.608 kb on - strand, within PfGW456L13_2012 at 2216.608 kb on - strand, within PfGW456L13_2012 at 2216.661 kb on + strand, within PfGW456L13_2012 at 2216.826 kb on - strand, within PfGW456L13_2012
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,214,287 + -0.6 2,214,288 - +1.5 2,214,288 - +0.0 2,214,323 - -0.9 2,214,348 - -0.1 2,214,610 + PfGW456L13_2010 0.15 +0.5 2,214,610 + PfGW456L13_2010 0.15 -0.9 2,214,611 - PfGW456L13_2010 0.15 -2.5 2,214,611 - PfGW456L13_2010 0.15 -1.9 2,214,611 - PfGW456L13_2010 0.15 -0.8 2,214,637 + PfGW456L13_2010 0.19 -0.6 2,214,752 + PfGW456L13_2010 0.38 -0.2 2,214,752 + PfGW456L13_2010 0.38 +0.3 2,214,752 + PfGW456L13_2010 0.38 +0.9 2,214,752 + PfGW456L13_2010 0.38 -0.6 2,214,753 - PfGW456L13_2010 0.38 -0.1 2,214,761 + PfGW456L13_2010 0.40 +0.4 2,214,761 + PfGW456L13_2010 0.40 -0.1 2,214,761 + PfGW456L13_2010 0.40 -0.6 2,214,761 + PfGW456L13_2010 0.40 -0.2 2,214,762 - PfGW456L13_2010 0.40 -0.1 2,214,762 - PfGW456L13_2010 0.40 -0.2 2,214,824 + PfGW456L13_2010 0.50 +0.5 2,214,824 + PfGW456L13_2010 0.50 +0.1 2,214,824 + PfGW456L13_2010 0.50 +0.5 2,214,825 - PfGW456L13_2010 0.50 -0.9 2,214,825 - PfGW456L13_2010 0.50 +0.5 2,214,836 + PfGW456L13_2010 0.52 +0.3 2,215,004 + PfGW456L13_2010 0.80 -1.2 2,215,011 - PfGW456L13_2010 0.81 +0.6 2,215,097 + +0.5 2,215,097 + +0.6 2,215,097 + -0.0 2,215,097 + -0.4 2,215,097 + -0.3 2,215,097 + -0.6 2,215,097 + +0.6 2,215,097 + -1.8 2,215,098 - -1.4 2,215,098 - -1.8 2,215,098 - +0.4 2,215,112 + -0.8 2,215,186 + +0.9 2,215,186 + +0.9 2,215,186 + +1.1 2,215,187 - -1.3 2,215,212 + +0.5 2,215,213 - -2.8 2,215,535 + PfGW456L13_2011 0.43 -0.5 2,215,535 + PfGW456L13_2011 0.43 -1.0 2,215,535 + PfGW456L13_2011 0.43 -1.1 2,215,536 - PfGW456L13_2011 0.43 -1.9 2,215,536 - PfGW456L13_2011 0.43 +1.4 2,215,700 + PfGW456L13_2011 0.67 -2.1 2,215,701 - PfGW456L13_2011 0.67 -0.2 2,215,701 - PfGW456L13_2011 0.67 -0.5 2,215,721 + PfGW456L13_2011 0.70 -1.6 2,215,721 + PfGW456L13_2011 0.70 -2.0 2,215,722 - PfGW456L13_2011 0.71 -1.3 2,215,722 - PfGW456L13_2011 0.71 -1.6 2,215,937 + +1.6 2,215,937 + +0.3 2,215,937 + +0.3 2,216,164 + PfGW456L13_2012 0.18 +1.6 2,216,165 - PfGW456L13_2012 0.18 -0.7 2,216,166 + PfGW456L13_2012 0.18 +2.2 2,216,166 + PfGW456L13_2012 0.18 +0.2 2,216,166 + PfGW456L13_2012 0.18 +1.3 2,216,166 + PfGW456L13_2012 0.18 +1.6 2,216,167 - PfGW456L13_2012 0.18 -0.9 2,216,167 - PfGW456L13_2012 0.18 -0.5 2,216,167 - PfGW456L13_2012 0.18 +1.7 2,216,170 + PfGW456L13_2012 0.19 -0.3 2,216,170 + PfGW456L13_2012 0.19 +0.8 2,216,170 + PfGW456L13_2012 0.19 +0.1 2,216,170 + PfGW456L13_2012 0.19 +0.2 2,216,170 + PfGW456L13_2012 0.19 +1.2 2,216,170 + PfGW456L13_2012 0.19 +0.5 2,216,170 + PfGW456L13_2012 0.19 +0.5 2,216,170 + PfGW456L13_2012 0.19 +0.4 2,216,170 + PfGW456L13_2012 0.19 +0.7 2,216,170 + PfGW456L13_2012 0.19 +1.4 2,216,171 - PfGW456L13_2012 0.19 -0.8 2,216,171 - PfGW456L13_2012 0.19 -0.7 2,216,171 - PfGW456L13_2012 0.19 -1.3 2,216,171 - PfGW456L13_2012 0.19 -0.3 2,216,171 - PfGW456L13_2012 0.19 -0.2 2,216,230 + PfGW456L13_2012 0.23 +0.4 2,216,230 + PfGW456L13_2012 0.23 -0.5 2,216,231 - PfGW456L13_2012 0.23 +0.2 2,216,231 - PfGW456L13_2012 0.23 -0.9 2,216,416 + PfGW456L13_2012 0.37 +0.5 2,216,417 - PfGW456L13_2012 0.37 -0.2 2,216,417 - PfGW456L13_2012 0.37 +1.0 2,216,607 + PfGW456L13_2012 0.51 +0.9 2,216,607 + PfGW456L13_2012 0.51 +1.8 2,216,608 - PfGW456L13_2012 0.51 +2.3 2,216,608 - PfGW456L13_2012 0.51 +1.7 2,216,661 + PfGW456L13_2012 0.55 -0.3 2,216,826 - PfGW456L13_2012 0.67 +3.1
Or see this region's nucleotide sequence