Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1981 and PfGW456L13_1982 are separated by 188 nucleotides PfGW456L13_1982 and PfGW456L13_5191 are separated by 62 nucleotides PfGW456L13_5191 and PfGW456L13_5192 are separated by 110 nucleotides PfGW456L13_5192 and PfGW456L13_5193 are separated by 75 nucleotides PfGW456L13_5193 and PfGW456L13_1983 are separated by 22 nucleotides
PfGW456L13_1981 - Aspartokinase (EC 2.7.2.4), at 2,186,195 to 2,187,436
_1981
PfGW456L13_1982 - Carbon storage regulator, at 2,187,625 to 2,187,813
_1982
PfGW456L13_5191 - tRNA-Ser-GCT, at 2,187,876 to 2,187,963
_5191
PfGW456L13_5192 - tRNA-Arg-ACG, at 2,188,074 to 2,188,147
_5192
PfGW456L13_5193 - tRNA-Arg-ACG, at 2,188,223 to 2,188,296
_5193
PfGW456L13_1983 - hypothetical protein, at 2,188,319 to 2,188,585
_1983
Position (kb)
2187
2188 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.920 kb on + strand, within PfGW456L13_1981 at 2186.923 kb on + strand, within PfGW456L13_1981 at 2186.923 kb on + strand, within PfGW456L13_1981 at 2186.923 kb on + strand, within PfGW456L13_1981 at 2186.923 kb on + strand, within PfGW456L13_1981 at 2186.923 kb on + strand, within PfGW456L13_1981 at 2187.539 kb on + strand at 2187.539 kb on + strand at 2187.539 kb on + strand at 2187.539 kb on + strand at 2187.605 kb on + strand at 2187.624 kb on + strand at 2187.624 kb on + strand at 2187.729 kb on + strand, within PfGW456L13_1982 at 2187.746 kb on + strand, within PfGW456L13_1982 at 2187.746 kb on + strand, within PfGW456L13_1982 at 2187.746 kb on + strand, within PfGW456L13_1982 at 2187.769 kb on + strand, within PfGW456L13_1982 at 2187.979 kb on + strand at 2187.986 kb on + strand at 2188.153 kb on + strand at 2188.160 kb on + strand at 2188.160 kb on + strand at 2188.160 kb on + strand at 2188.164 kb on + strand at 2188.174 kb on + strand at 2188.174 kb on + strand at 2188.174 kb on + strand at 2188.174 kb on + strand at 2188.174 kb on + strand at 2188.174 kb on + strand at 2188.178 kb on + strand at 2188.209 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.300 kb on + strand at 2188.320 kb on + strand at 2188.320 kb on + strand at 2188.397 kb on - strand, within PfGW456L13_1983 at 2188.422 kb on + strand, within PfGW456L13_1983 at 2188.445 kb on - strand, within PfGW456L13_1983 at 2188.445 kb on - strand, within PfGW456L13_1983 at 2188.645 kb on + strand at 2188.646 kb on - strand at 2188.696 kb on + strand at 2188.732 kb on + strand at 2188.732 kb on + strand at 2188.732 kb on + strand at 2188.732 kb on + strand at 2188.733 kb on - strand at 2188.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 2,186,920 + PfGW456L13_1981 0.58 +0.2 2,186,920 + PfGW456L13_1981 0.58 +0.7 2,186,920 + PfGW456L13_1981 0.58 -0.2 2,186,920 + PfGW456L13_1981 0.58 +1.5 2,186,920 + PfGW456L13_1981 0.58 -1.5 2,186,920 + PfGW456L13_1981 0.58 +0.1 2,186,920 + PfGW456L13_1981 0.58 +0.1 2,186,920 + PfGW456L13_1981 0.58 -0.1 2,186,923 + PfGW456L13_1981 0.59 -0.1 2,186,923 + PfGW456L13_1981 0.59 -0.1 2,186,923 + PfGW456L13_1981 0.59 -0.2 2,186,923 + PfGW456L13_1981 0.59 -0.5 2,186,923 + PfGW456L13_1981 0.59 +0.4 2,187,539 + +0.1 2,187,539 + -0.1 2,187,539 + -0.3 2,187,539 + -0.6 2,187,605 + +1.7 2,187,624 + -2.4 2,187,624 + -1.6 2,187,729 + PfGW456L13_1982 0.55 +0.7 2,187,746 + PfGW456L13_1982 0.64 +0.4 2,187,746 + PfGW456L13_1982 0.64 -0.6 2,187,746 + PfGW456L13_1982 0.64 -2.5 2,187,769 + PfGW456L13_1982 0.76 -1.0 2,187,979 + -1.4 2,187,986 + +1.0 2,188,153 + +0.2 2,188,160 + -1.4 2,188,160 + -0.0 2,188,160 + -1.0 2,188,164 + -0.6 2,188,174 + -0.2 2,188,174 + +1.1 2,188,174 + -0.0 2,188,174 + -0.6 2,188,174 + -0.1 2,188,174 + -0.6 2,188,178 + -0.4 2,188,209 + -1.3 2,188,300 + -3.3 2,188,300 + -0.0 2,188,300 + +1.0 2,188,300 + -1.8 2,188,300 + -0.2 2,188,300 + -0.2 2,188,300 + -0.4 2,188,300 + -0.4 2,188,300 + +0.1 2,188,300 + +0.2 2,188,300 + +0.6 2,188,300 + -0.6 2,188,320 + +0.4 2,188,320 + +0.1 2,188,397 - PfGW456L13_1983 0.29 +1.7 2,188,422 + PfGW456L13_1983 0.39 -0.0 2,188,445 - PfGW456L13_1983 0.47 -1.4 2,188,445 - PfGW456L13_1983 0.47 +0.6 2,188,645 + +1.0 2,188,646 - -0.1 2,188,696 + +0.4 2,188,732 + -0.9 2,188,732 + +0.1 2,188,732 + +0.9 2,188,732 + -0.6 2,188,733 - +0.8 2,188,733 - +1.0
Or see this region's nucleotide sequence