Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_179

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_178 and PfGW456L13_179 are separated by 50 nucleotidesPfGW456L13_179 and PfGW456L13_180 are separated by 274 nucleotides PfGW456L13_178 - Topoisomerase IV subunit B (EC 5.99.1.-), at 204,219 to 206,123 _178 PfGW456L13_179 - Putative esterase, FIGfam005057, at 206,174 to 206,782 _179 PfGW456L13_180 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 207,057 to 207,896 _180 Position (kb) 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1at 206.314 kb on - strand, within PfGW456L13_179at 206.314 kb on - strand, within PfGW456L13_179at 206.314 kb on - strand, within PfGW456L13_179at 206.363 kb on + strand, within PfGW456L13_179at 206.363 kb on + strand, within PfGW456L13_179at 206.364 kb on - strand, within PfGW456L13_179at 206.364 kb on - strand, within PfGW456L13_179at 206.364 kb on - strand, within PfGW456L13_179at 206.364 kb on - strand, within PfGW456L13_179at 206.364 kb on - strand, within PfGW456L13_179at 206.456 kb on - strand, within PfGW456L13_179at 206.457 kb on + strand, within PfGW456L13_179at 206.458 kb on - strand, within PfGW456L13_179at 206.458 kb on - strand, within PfGW456L13_179at 206.482 kb on - strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.565 kb on + strand, within PfGW456L13_179at 206.566 kb on - strand, within PfGW456L13_179at 206.566 kb on - strand, within PfGW456L13_179at 206.566 kb on - strand, within PfGW456L13_179at 206.566 kb on - strand, within PfGW456L13_179at 206.566 kb on - strand, within PfGW456L13_179at 206.566 kb on - strand, within PfGW456L13_179at 206.568 kb on + strand, within PfGW456L13_179at 206.569 kb on - strand, within PfGW456L13_179at 206.761 kb on + strandat 206.762 kb on - strandat 206.762 kb on - strandat 206.763 kb on + strandat 206.763 kb on + strandat 206.764 kb on - strandat 206.764 kb on - strandat 206.764 kb on - strandat 206.764 kb on - strandat 206.819 kb on + strandat 206.820 kb on - strandat 206.820 kb on - strandat 206.820 kb on - strandat 206.825 kb on - strandat 206.897 kb on - strandat 206.929 kb on + strandat 206.929 kb on + strandat 206.929 kb on + strandat 206.929 kb on + strandat 206.930 kb on - strandat 206.930 kb on - strandat 207.024 kb on - strandat 207.045 kb on + strandat 207.046 kb on - strandat 207.076 kb on + strandat 207.077 kb on - strandat 207.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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206,314 - PfGW456L13_179 0.23 +0.6
206,314 - PfGW456L13_179 0.23 +0.4
206,314 - PfGW456L13_179 0.23 -1.1
206,363 + PfGW456L13_179 0.31 -1.2
206,363 + PfGW456L13_179 0.31 -0.9
206,364 - PfGW456L13_179 0.31 -0.1
206,364 - PfGW456L13_179 0.31 +0.9
206,364 - PfGW456L13_179 0.31 +1.4
206,364 - PfGW456L13_179 0.31 -1.6
206,364 - PfGW456L13_179 0.31 -0.5
206,456 - PfGW456L13_179 0.46 -1.4
206,457 + PfGW456L13_179 0.46 -0.9
206,458 - PfGW456L13_179 0.47 -0.3
206,458 - PfGW456L13_179 0.47 -3.5
206,482 - PfGW456L13_179 0.51 -2.6
206,565 + PfGW456L13_179 0.64 -1.3
206,565 + PfGW456L13_179 0.64 -2.1
206,565 + PfGW456L13_179 0.64 +0.5
206,565 + PfGW456L13_179 0.64 +0.2
206,565 + PfGW456L13_179 0.64 -1.3
206,565 + PfGW456L13_179 0.64 -1.9
206,565 + PfGW456L13_179 0.64 -0.8
206,566 - PfGW456L13_179 0.64 -0.1
206,566 - PfGW456L13_179 0.64 -0.6
206,566 - PfGW456L13_179 0.64 -0.7
206,566 - PfGW456L13_179 0.64 -0.5
206,566 - PfGW456L13_179 0.64 +0.4
206,566 - PfGW456L13_179 0.64 -2.1
206,568 + PfGW456L13_179 0.65 -1.3
206,569 - PfGW456L13_179 0.65 -0.1
206,761 + -0.1
206,762 - -1.7
206,762 - -1.1
206,763 + -0.4
206,763 + -0.9
206,764 - +0.2
206,764 - -0.1
206,764 - +0.6
206,764 - -1.4
206,819 + +0.2
206,820 - +0.1
206,820 - +0.0
206,820 - +0.1
206,825 - +0.3
206,897 - +0.6
206,929 + +0.4
206,929 + +0.4
206,929 + +1.3
206,929 + -0.1
206,930 - -0.1
206,930 - -0.3
207,024 - -1.4
207,045 + +1.0
207,046 - +0.4
207,076 + +0.4
207,077 - -0.4
207,077 - +0.5

Or see this region's nucleotide sequence