Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1527 and PfGW456L13_1528 are separated by 229 nucleotides PfGW456L13_1528 and PfGW456L13_1529 are separated by 333 nucleotides
PfGW456L13_1527 - glutamyl-Q-tRNA synthetase, at 1,680,788 to 1,681,684
_1527
PfGW456L13_1528 - C4-type zinc finger protein, DksA/TraR family, at 1,681,914 to 1,682,354
_1528
PfGW456L13_1529 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 1,682,688 to 1,683,860
_1529
Position (kb)
1681
1682
1683 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1680.978 kb on + strand, within PfGW456L13_1527 at 1680.985 kb on + strand, within PfGW456L13_1527 at 1681.024 kb on + strand, within PfGW456L13_1527 at 1681.024 kb on + strand, within PfGW456L13_1527 at 1681.033 kb on - strand, within PfGW456L13_1527 at 1681.033 kb on - strand, within PfGW456L13_1527 at 1681.068 kb on + strand, within PfGW456L13_1527 at 1681.068 kb on + strand, within PfGW456L13_1527 at 1681.068 kb on + strand, within PfGW456L13_1527 at 1681.069 kb on - strand, within PfGW456L13_1527 at 1681.161 kb on + strand, within PfGW456L13_1527 at 1681.167 kb on + strand, within PfGW456L13_1527 at 1681.167 kb on + strand, within PfGW456L13_1527 at 1681.167 kb on + strand, within PfGW456L13_1527 at 1681.257 kb on + strand, within PfGW456L13_1527 at 1681.257 kb on + strand, within PfGW456L13_1527 at 1681.257 kb on + strand, within PfGW456L13_1527 at 1681.257 kb on + strand, within PfGW456L13_1527 at 1681.258 kb on - strand, within PfGW456L13_1527 at 1681.381 kb on - strand, within PfGW456L13_1527 at 1681.422 kb on + strand, within PfGW456L13_1527 at 1681.422 kb on + strand, within PfGW456L13_1527 at 1681.476 kb on + strand, within PfGW456L13_1527 at 1681.476 kb on + strand, within PfGW456L13_1527 at 1681.476 kb on + strand, within PfGW456L13_1527 at 1681.587 kb on + strand, within PfGW456L13_1527 at 1681.587 kb on + strand, within PfGW456L13_1527 at 1681.659 kb on + strand at 1681.659 kb on + strand at 1681.659 kb on + strand at 1681.659 kb on + strand at 1681.659 kb on + strand at 1681.659 kb on + strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.660 kb on - strand at 1681.696 kb on + strand at 1681.696 kb on + strand at 1681.696 kb on + strand at 1681.696 kb on + strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.697 kb on - strand at 1681.700 kb on + strand at 1681.700 kb on + strand at 1681.700 kb on + strand at 1681.700 kb on + strand at 1681.700 kb on + strand at 1681.700 kb on + strand at 1681.701 kb on - strand at 1681.701 kb on - strand at 1681.701 kb on - strand at 1681.726 kb on + strand at 1681.727 kb on - strand at 1681.727 kb on - strand at 1681.820 kb on + strand at 1681.820 kb on + strand at 1681.820 kb on + strand at 1681.820 kb on + strand at 1681.820 kb on + strand at 1681.820 kb on + strand at 1681.915 kb on + strand at 1681.915 kb on + strand at 1681.916 kb on - strand at 1681.916 kb on - strand at 1682.038 kb on + strand, within PfGW456L13_1528 at 1682.278 kb on + strand, within PfGW456L13_1528 at 1682.278 kb on + strand, within PfGW456L13_1528 at 1682.359 kb on + strand at 1682.360 kb on - strand at 1682.371 kb on - strand at 1682.371 kb on - strand at 1682.371 kb on - strand at 1682.470 kb on - strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.606 kb on + strand at 1682.607 kb on - strand at 1682.607 kb on - strand at 1682.607 kb on - strand at 1682.607 kb on - strand at 1682.607 kb on - strand at 1682.607 kb on - strand at 1682.626 kb on + strand at 1682.626 kb on + strand at 1682.626 kb on + strand at 1682.627 kb on - strand at 1682.654 kb on + strand at 1682.654 kb on + strand at 1682.655 kb on - strand at 1682.700 kb on + strand at 1682.700 kb on + strand at 1682.701 kb on - strand at 1682.701 kb on - strand at 1682.701 kb on - strand at 1682.931 kb on + strand, within PfGW456L13_1529 at 1682.931 kb on + strand, within PfGW456L13_1529 at 1682.931 kb on + strand, within PfGW456L13_1529 at 1682.931 kb on + strand, within PfGW456L13_1529 at 1682.931 kb on + strand, within PfGW456L13_1529 at 1682.932 kb on - strand, within PfGW456L13_1529 at 1682.932 kb on - strand, within PfGW456L13_1529 at 1683.306 kb on + strand, within PfGW456L13_1529 at 1683.307 kb on - strand, within PfGW456L13_1529 at 1683.322 kb on - strand, within PfGW456L13_1529
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 1,680,978 + PfGW456L13_1527 0.21 -0.1 1,680,985 + PfGW456L13_1527 0.22 -0.5 1,681,024 + PfGW456L13_1527 0.26 +0.9 1,681,024 + PfGW456L13_1527 0.26 +0.2 1,681,033 - PfGW456L13_1527 0.27 -1.0 1,681,033 - PfGW456L13_1527 0.27 -0.1 1,681,068 + PfGW456L13_1527 0.31 -0.2 1,681,068 + PfGW456L13_1527 0.31 +0.1 1,681,068 + PfGW456L13_1527 0.31 +2.1 1,681,069 - PfGW456L13_1527 0.31 +1.9 1,681,161 + PfGW456L13_1527 0.42 +1.7 1,681,167 + PfGW456L13_1527 0.42 +0.8 1,681,167 + PfGW456L13_1527 0.42 +0.8 1,681,167 + PfGW456L13_1527 0.42 +0.1 1,681,257 + PfGW456L13_1527 0.52 -0.3 1,681,257 + PfGW456L13_1527 0.52 +0.2 1,681,257 + PfGW456L13_1527 0.52 +0.8 1,681,257 + PfGW456L13_1527 0.52 +0.9 1,681,258 - PfGW456L13_1527 0.52 +0.0 1,681,381 - PfGW456L13_1527 0.66 -1.1 1,681,422 + PfGW456L13_1527 0.71 -2.4 1,681,422 + PfGW456L13_1527 0.71 +0.1 1,681,476 + PfGW456L13_1527 0.77 +0.9 1,681,476 + PfGW456L13_1527 0.77 +0.6 1,681,476 + PfGW456L13_1527 0.77 +0.3 1,681,587 + PfGW456L13_1527 0.89 +1.7 1,681,587 + PfGW456L13_1527 0.89 -0.8 1,681,659 + -0.0 1,681,659 + -0.0 1,681,659 + +0.3 1,681,659 + +0.7 1,681,659 + +1.2 1,681,659 + +0.6 1,681,660 - +0.1 1,681,660 - -0.5 1,681,660 - -0.1 1,681,660 - +0.9 1,681,660 - +0.3 1,681,660 - -0.6 1,681,660 - -1.0 1,681,660 - +1.8 1,681,660 - +0.4 1,681,660 - -0.9 1,681,660 - +0.4 1,681,696 + +0.8 1,681,696 + +1.1 1,681,696 + +0.2 1,681,696 + +0.0 1,681,697 - -1.1 1,681,697 - +0.6 1,681,697 - +0.4 1,681,697 - +0.8 1,681,697 - -0.5 1,681,697 - -0.4 1,681,697 - +0.5 1,681,697 - +0.3 1,681,700 + +1.0 1,681,700 + -0.1 1,681,700 + -0.0 1,681,700 + +0.7 1,681,700 + +1.2 1,681,700 + +0.7 1,681,701 - +0.7 1,681,701 - +0.9 1,681,701 - +1.9 1,681,726 + -0.3 1,681,727 - -1.4 1,681,727 - -0.6 1,681,820 + +0.9 1,681,820 + +0.1 1,681,820 + -0.6 1,681,820 + -0.1 1,681,820 + +1.1 1,681,820 + +0.0 1,681,915 + -0.2 1,681,915 + +0.3 1,681,916 - +0.5 1,681,916 - -0.8 1,682,038 + PfGW456L13_1528 0.28 -2.8 1,682,278 + PfGW456L13_1528 0.83 -1.8 1,682,278 + PfGW456L13_1528 0.83 -0.5 1,682,359 + -1.9 1,682,360 - -0.1 1,682,371 - +0.0 1,682,371 - +1.3 1,682,371 - +0.2 1,682,470 - +0.4 1,682,606 + -1.2 1,682,606 + +1.5 1,682,606 + +1.0 1,682,606 + +0.4 1,682,606 + -0.3 1,682,606 + +1.1 1,682,606 + +0.1 1,682,606 + +0.2 1,682,607 - +0.1 1,682,607 - +0.8 1,682,607 - -1.4 1,682,607 - +0.0 1,682,607 - -1.4 1,682,607 - -0.6 1,682,626 + +1.0 1,682,626 + -0.1 1,682,626 + -0.2 1,682,627 - -0.5 1,682,654 + +1.8 1,682,654 + -0.3 1,682,655 - +0.8 1,682,700 + -0.1 1,682,700 + +0.2 1,682,701 - -0.7 1,682,701 - -1.8 1,682,701 - -0.2 1,682,931 + PfGW456L13_1529 0.21 -0.6 1,682,931 + PfGW456L13_1529 0.21 +0.3 1,682,931 + PfGW456L13_1529 0.21 -0.0 1,682,931 + PfGW456L13_1529 0.21 +2.4 1,682,931 + PfGW456L13_1529 0.21 -0.5 1,682,932 - PfGW456L13_1529 0.21 -0.2 1,682,932 - PfGW456L13_1529 0.21 +0.0 1,683,306 + PfGW456L13_1529 0.53 +1.1 1,683,307 - PfGW456L13_1529 0.53 +1.1 1,683,322 - PfGW456L13_1529 0.54 +1.0
Or see this region's nucleotide sequence