Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_149 and PfGW456L13_150 overlap by 48 nucleotides PfGW456L13_150 and PfGW456L13_151 are separated by 261 nucleotides PfGW456L13_151 and PfGW456L13_152 overlap by 1 nucleotides
PfGW456L13_149 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 173,654 to 174,748
_149
PfGW456L13_150 - hypothetical protein, at 174,701 to 174,892
_150
PfGW456L13_151 - HflC protein, at 175,154 to 176,023
_151
PfGW456L13_152 - HflK protein, at 176,023 to 177,198
_152
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.245 kb on - strand, within PfGW456L13_149 at 174.245 kb on - strand, within PfGW456L13_149 at 174.245 kb on - strand, within PfGW456L13_149 at 174.245 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.337 kb on - strand, within PfGW456L13_149 at 174.448 kb on - strand, within PfGW456L13_149 at 174.526 kb on - strand, within PfGW456L13_149 at 174.560 kb on - strand, within PfGW456L13_149 at 174.560 kb on - strand, within PfGW456L13_149 at 174.694 kb on - strand at 174.773 kb on - strand, within PfGW456L13_150 at 174.843 kb on - strand, within PfGW456L13_150 at 174.855 kb on - strand, within PfGW456L13_150 at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.116 kb on + strand at 175.116 kb on + strand at 175.177 kb on - strand at 175.177 kb on - strand at 175.260 kb on + strand, within PfGW456L13_151 at 175.261 kb on - strand, within PfGW456L13_151 at 175.269 kb on + strand, within PfGW456L13_151 at 175.269 kb on + strand, within PfGW456L13_151 at 175.270 kb on - strand, within PfGW456L13_151 at 175.302 kb on + strand, within PfGW456L13_151 at 175.582 kb on + strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.725 kb on + strand, within PfGW456L13_151 at 175.953 kb on + strand at 175.954 kb on - strand at 175.954 kb on - strand at 175.954 kb on - strand at 176.015 kb on - strand at 176.040 kb on + strand at 176.041 kb on - strand at 176.418 kb on - strand, within PfGW456L13_152 at 176.418 kb on - strand, within PfGW456L13_152 at 176.515 kb on + strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.937 kb on - strand, within PfGW456L13_152
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 174,245 - PfGW456L13_149 0.54 -1.1 174,245 - PfGW456L13_149 0.54 -0.8 174,245 - PfGW456L13_149 0.54 +0.4 174,245 - PfGW456L13_149 0.54 -1.2 174,266 - PfGW456L13_149 0.56 -1.1 174,266 - PfGW456L13_149 0.56 -1.0 174,266 - PfGW456L13_149 0.56 +1.6 174,266 - PfGW456L13_149 0.56 +0.1 174,337 - PfGW456L13_149 0.62 +0.8 174,448 - PfGW456L13_149 0.73 +0.1 174,526 - PfGW456L13_149 0.80 -0.5 174,560 - PfGW456L13_149 0.83 -0.2 174,560 - PfGW456L13_149 0.83 -0.5 174,694 - -0.5 174,773 - PfGW456L13_150 0.38 +0.4 174,843 - PfGW456L13_150 0.74 -0.4 174,855 - PfGW456L13_150 0.80 -0.6 175,078 - +0.7 175,078 - -1.5 175,078 - -1.7 175,078 - +0.7 175,078 - -0.2 175,078 - +0.1 175,078 - +1.2 175,078 - -1.0 175,078 - +0.6 175,116 + -0.7 175,116 + +0.4 175,177 - +1.1 175,177 - -0.6 175,260 + PfGW456L13_151 0.12 -0.7 175,261 - PfGW456L13_151 0.12 -2.3 175,269 + PfGW456L13_151 0.13 -2.2 175,269 + PfGW456L13_151 0.13 +1.2 175,270 - PfGW456L13_151 0.13 -2.0 175,302 + PfGW456L13_151 0.17 -1.5 175,582 + PfGW456L13_151 0.49 -2.2 175,723 - PfGW456L13_151 0.65 +0.8 175,723 - PfGW456L13_151 0.65 -0.2 175,723 - PfGW456L13_151 0.65 -0.2 175,725 + PfGW456L13_151 0.66 +0.8 175,953 + -0.9 175,954 - -1.4 175,954 - +2.3 175,954 - +0.3 176,015 - +1.3 176,040 + -1.7 176,041 - -0.5 176,418 - PfGW456L13_152 0.34 -0.7 176,418 - PfGW456L13_152 0.34 +0.4 176,515 + PfGW456L13_152 0.42 +0.4 176,736 - PfGW456L13_152 0.61 -0.2 176,736 - PfGW456L13_152 0.61 +1.6 176,736 - PfGW456L13_152 0.61 +0.6 176,832 - PfGW456L13_152 0.69 -0.3 176,832 - PfGW456L13_152 0.69 -0.3 176,832 - PfGW456L13_152 0.69 +0.3 176,832 - PfGW456L13_152 0.69 +0.8 176,832 - PfGW456L13_152 0.69 -2.7 176,856 - PfGW456L13_152 0.71 +1.3 176,856 - PfGW456L13_152 0.71 +0.3 176,856 - PfGW456L13_152 0.71 +0.5 176,856 - PfGW456L13_152 0.71 -0.5 176,886 - PfGW456L13_152 0.73 -0.3 176,886 - PfGW456L13_152 0.73 +0.3 176,889 - PfGW456L13_152 0.74 -0.3 176,889 - PfGW456L13_152 0.74 -0.7 176,937 - PfGW456L13_152 0.78 +1.3
Or see this region's nucleotide sequence