Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4038 and Echvi_4039 are separated by 149 nucleotides Echvi_4039 and Echvi_4040 are separated by 163 nucleotides
Echvi_4038: Echvi_4038 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 4,840,015 to 4,842,882
_4038
Echvi_4039: Echvi_4039 - aconitate hydratase 1, at 4,843,032 to 4,845,809
_4039
Echvi_4040: Echvi_4040 - Uncharacterized protein conserved in bacteria, at 4,845,973 to 4,847,019
_4040
Position (kb)
4843
4844
4845
4846 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4842.100 kb on + strand, within Echvi_4038 at 4842.160 kb on - strand, within Echvi_4038 at 4842.164 kb on + strand, within Echvi_4038 at 4842.165 kb on - strand, within Echvi_4038 at 4842.206 kb on - strand, within Echvi_4038 at 4842.235 kb on + strand, within Echvi_4038 at 4842.235 kb on + strand, within Echvi_4038 at 4842.235 kb on + strand, within Echvi_4038 at 4842.236 kb on - strand, within Echvi_4038 at 4842.236 kb on - strand, within Echvi_4038 at 4842.236 kb on - strand, within Echvi_4038 at 4842.237 kb on + strand, within Echvi_4038 at 4842.237 kb on + strand, within Echvi_4038 at 4842.238 kb on - strand, within Echvi_4038 at 4842.241 kb on + strand, within Echvi_4038 at 4842.248 kb on + strand, within Echvi_4038 at 4842.248 kb on + strand, within Echvi_4038 at 4842.261 kb on - strand, within Echvi_4038 at 4842.275 kb on - strand, within Echvi_4038 at 4842.345 kb on + strand, within Echvi_4038 at 4842.346 kb on - strand, within Echvi_4038 at 4842.386 kb on - strand, within Echvi_4038 at 4842.557 kb on - strand, within Echvi_4038 at 4842.591 kb on - strand, within Echvi_4038 at 4842.592 kb on + strand, within Echvi_4038 at 4842.593 kb on - strand, within Echvi_4038 at 4842.593 kb on - strand, within Echvi_4038 at 4842.593 kb on - strand, within Echvi_4038 at 4842.593 kb on - strand, within Echvi_4038 at 4842.628 kb on + strand at 4842.628 kb on + strand at 4842.629 kb on - strand at 4842.629 kb on - strand at 4842.656 kb on - strand at 4842.692 kb on - strand at 4842.775 kb on - strand at 4842.778 kb on + strand at 4842.819 kb on + strand at 4842.841 kb on + strand at 4842.870 kb on - strand at 4843.064 kb on - strand at 4843.085 kb on + strand at 4843.088 kb on - strand at 4843.090 kb on + strand at 4843.091 kb on - strand at 4843.122 kb on + strand at 4843.122 kb on + strand at 4843.243 kb on - strand at 4843.324 kb on + strand, within Echvi_4039 at 4843.402 kb on + strand, within Echvi_4039 at 4843.402 kb on + strand, within Echvi_4039 at 4843.403 kb on - strand, within Echvi_4039 at 4843.419 kb on + strand, within Echvi_4039 at 4843.493 kb on + strand, within Echvi_4039 at 4843.502 kb on + strand, within Echvi_4039 at 4843.597 kb on + strand, within Echvi_4039 at 4843.598 kb on - strand, within Echvi_4039 at 4843.598 kb on - strand, within Echvi_4039 at 4843.598 kb on - strand, within Echvi_4039 at 4843.632 kb on + strand, within Echvi_4039 at 4843.685 kb on + strand, within Echvi_4039 at 4843.685 kb on + strand, within Echvi_4039 at 4843.685 kb on + strand, within Echvi_4039 at 4843.686 kb on - strand, within Echvi_4039 at 4843.686 kb on - strand, within Echvi_4039 at 4843.697 kb on + strand, within Echvi_4039 at 4843.794 kb on + strand, within Echvi_4039 at 4843.795 kb on - strand, within Echvi_4039 at 4843.795 kb on - strand, within Echvi_4039 at 4843.799 kb on - strand, within Echvi_4039 at 4843.970 kb on - strand, within Echvi_4039 at 4844.026 kb on - strand, within Echvi_4039 at 4844.044 kb on + strand, within Echvi_4039 at 4844.213 kb on + strand, within Echvi_4039 at 4844.213 kb on + strand, within Echvi_4039 at 4844.278 kb on - strand, within Echvi_4039 at 4844.297 kb on + strand, within Echvi_4039 at 4844.298 kb on - strand, within Echvi_4039 at 4844.405 kb on + strand, within Echvi_4039 at 4844.405 kb on + strand, within Echvi_4039 at 4844.405 kb on + strand, within Echvi_4039 at 4844.406 kb on - strand, within Echvi_4039 at 4844.577 kb on - strand, within Echvi_4039 at 4844.600 kb on + strand, within Echvi_4039 at 4844.613 kb on - strand, within Echvi_4039 at 4844.614 kb on + strand, within Echvi_4039 at 4844.614 kb on + strand, within Echvi_4039 at 4844.614 kb on + strand, within Echvi_4039 at 4844.711 kb on + strand, within Echvi_4039 at 4844.747 kb on + strand, within Echvi_4039 at 4844.748 kb on - strand, within Echvi_4039 at 4844.752 kb on + strand, within Echvi_4039 at 4844.782 kb on - strand, within Echvi_4039 at 4844.787 kb on - strand, within Echvi_4039 at 4844.787 kb on - strand, within Echvi_4039 at 4844.787 kb on - strand, within Echvi_4039 at 4844.787 kb on - strand, within Echvi_4039 at 4844.800 kb on + strand at 4844.852 kb on - strand, within Echvi_4039 at 4844.852 kb on - strand, within Echvi_4039 at 4844.861 kb on + strand, within Echvi_4039 at 4844.862 kb on - strand, within Echvi_4039 at 4844.881 kb on + strand, within Echvi_4039 at 4844.882 kb on - strand, within Echvi_4039 at 4844.892 kb on - strand, within Echvi_4039 at 4844.912 kb on + strand, within Echvi_4039 at 4844.912 kb on + strand, within Echvi_4039 at 4844.913 kb on - strand at 4844.913 kb on - strand, within Echvi_4039 at 4844.913 kb on - strand, within Echvi_4039 at 4844.967 kb on + strand, within Echvi_4039 at 4844.967 kb on + strand, within Echvi_4039 at 4845.042 kb on - strand, within Echvi_4039 at 4845.071 kb on + strand, within Echvi_4039 at 4845.071 kb on + strand, within Echvi_4039 at 4845.072 kb on - strand, within Echvi_4039 at 4845.078 kb on + strand at 4845.081 kb on + strand, within Echvi_4039 at 4845.081 kb on + strand, within Echvi_4039 at 4845.081 kb on + strand, within Echvi_4039 at 4845.096 kb on - strand, within Echvi_4039 at 4845.100 kb on + strand, within Echvi_4039 at 4845.144 kb on + strand, within Echvi_4039 at 4845.257 kb on - strand, within Echvi_4039 at 4845.267 kb on + strand, within Echvi_4039 at 4845.268 kb on - strand, within Echvi_4039 at 4845.268 kb on - strand, within Echvi_4039 at 4845.287 kb on + strand, within Echvi_4039 at 4845.288 kb on - strand, within Echvi_4039 at 4845.288 kb on - strand, within Echvi_4039 at 4845.391 kb on + strand, within Echvi_4039 at 4845.391 kb on + strand, within Echvi_4039 at 4845.392 kb on - strand, within Echvi_4039 at 4845.525 kb on + strand, within Echvi_4039 at 4845.526 kb on - strand, within Echvi_4039 at 4845.555 kb on + strand at 4845.556 kb on - strand at 4845.575 kb on - strand at 4845.655 kb on + strand at 4845.656 kb on - strand at 4845.656 kb on - strand at 4845.656 kb on - strand at 4845.683 kb on + strand at 4845.683 kb on + strand at 4845.684 kb on - strand at 4845.684 kb on - strand at 4845.684 kb on - strand at 4845.684 kb on - strand at 4845.754 kb on - strand at 4845.754 kb on - strand at 4845.794 kb on - strand at 4845.802 kb on - strand at 4845.826 kb on + strand at 4845.881 kb on + strand at 4845.884 kb on + strand at 4845.886 kb on + strand at 4845.946 kb on - strand at 4845.950 kb on + strand at 4845.951 kb on - strand at 4845.958 kb on + strand at 4845.958 kb on + strand at 4845.970 kb on - strand at 4845.972 kb on + strand at 4845.972 kb on + strand at 4845.973 kb on - strand at 4845.986 kb on + strand at 4845.986 kb on + strand at 4845.986 kb on + strand at 4845.987 kb on - strand at 4845.987 kb on - strand at 4846.008 kb on - strand at 4846.094 kb on + strand, within Echvi_4040 at 4846.094 kb on + strand, within Echvi_4040 at 4846.166 kb on + strand, within Echvi_4040 at 4846.166 kb on + strand, within Echvi_4040 at 4846.166 kb on + strand, within Echvi_4040 at 4846.166 kb on + strand, within Echvi_4040 at 4846.167 kb on - strand, within Echvi_4040 at 4846.167 kb on - strand, within Echvi_4040 at 4846.167 kb on - strand, within Echvi_4040 at 4846.167 kb on - strand, within Echvi_4040 at 4846.281 kb on - strand, within Echvi_4040 at 4846.298 kb on - strand, within Echvi_4040 at 4846.303 kb on + strand, within Echvi_4040 at 4846.334 kb on + strand, within Echvi_4040 at 4846.334 kb on + strand, within Echvi_4040 at 4846.453 kb on - strand, within Echvi_4040 at 4846.456 kb on + strand, within Echvi_4040 at 4846.456 kb on + strand, within Echvi_4040 at 4846.456 kb on + strand, within Echvi_4040 at 4846.456 kb on + strand, within Echvi_4040 at 4846.456 kb on + strand, within Echvi_4040 at 4846.457 kb on - strand, within Echvi_4040 at 4846.472 kb on - strand, within Echvi_4040 at 4846.472 kb on - strand, within Echvi_4040 at 4846.472 kb on - strand, within Echvi_4040 at 4846.472 kb on - strand, within Echvi_4040 at 4846.570 kb on - strand, within Echvi_4040 at 4846.575 kb on - strand, within Echvi_4040 at 4846.591 kb on - strand, within Echvi_4040 at 4846.620 kb on + strand, within Echvi_4040 at 4846.621 kb on - strand, within Echvi_4040 at 4846.621 kb on - strand, within Echvi_4040 at 4846.621 kb on - strand, within Echvi_4040 at 4846.643 kb on + strand, within Echvi_4040 at 4846.712 kb on + strand, within Echvi_4040 at 4846.713 kb on - strand, within Echvi_4040 at 4846.723 kb on + strand, within Echvi_4040 at 4846.724 kb on - strand, within Echvi_4040 at 4846.724 kb on - strand, within Echvi_4040 at 4846.724 kb on - strand, within Echvi_4040 at 4846.724 kb on - strand, within Echvi_4040 at 4846.726 kb on - strand, within Echvi_4040 at 4846.726 kb on - strand, within Echvi_4040 at 4846.729 kb on - strand, within Echvi_4040 at 4846.749 kb on - strand, within Echvi_4040 at 4846.787 kb on - strand, within Echvi_4040 at 4846.787 kb on - strand, within Echvi_4040 at 4846.787 kb on - strand, within Echvi_4040 at 4846.787 kb on - strand, within Echvi_4040 at 4846.791 kb on + strand, within Echvi_4040
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,842,100 + Echvi_4038 0.73 -1.2 4,842,160 - Echvi_4038 0.75 -1.2 4,842,164 + Echvi_4038 0.75 +0.4 4,842,165 - Echvi_4038 0.75 +0.1 4,842,206 - Echvi_4038 0.76 -1.2 4,842,235 + Echvi_4038 0.77 +2.3 4,842,235 + Echvi_4038 0.77 -0.1 4,842,235 + Echvi_4038 0.77 -0.2 4,842,236 - Echvi_4038 0.77 -1.2 4,842,236 - Echvi_4038 0.77 -0.3 4,842,236 - Echvi_4038 0.77 -2.2 4,842,237 + Echvi_4038 0.77 +0.9 4,842,237 + Echvi_4038 0.77 +0.4 4,842,238 - Echvi_4038 0.78 +0.0 4,842,241 + Echvi_4038 0.78 +0.0 4,842,248 + Echvi_4038 0.78 +0.1 4,842,248 + Echvi_4038 0.78 +1.4 4,842,261 - Echvi_4038 0.78 +0.2 4,842,275 - Echvi_4038 0.79 +0.5 4,842,345 + Echvi_4038 0.81 +0.4 4,842,346 - Echvi_4038 0.81 +0.4 4,842,386 - Echvi_4038 0.83 -0.2 4,842,557 - Echvi_4038 0.89 +0.4 4,842,591 - Echvi_4038 0.90 +0.8 4,842,592 + Echvi_4038 0.90 +1.7 4,842,593 - Echvi_4038 0.90 -0.2 4,842,593 - Echvi_4038 0.90 +0.8 4,842,593 - Echvi_4038 0.90 +0.3 4,842,593 - Echvi_4038 0.90 +0.5 4,842,628 + -2.2 4,842,628 + -1.6 4,842,629 - +1.5 4,842,629 - +0.5 4,842,656 - -0.2 4,842,692 - +0.3 4,842,775 - -1.3 4,842,778 + -1.3 4,842,819 + -2.9 4,842,841 + +0.6 4,842,870 - -0.2 4,843,064 - +0.3 4,843,085 + -0.3 4,843,088 - +1.3 4,843,090 + -1.2 4,843,091 - +0.6 4,843,122 + +2.8 4,843,122 + +1.7 4,843,243 - +0.3 4,843,324 + Echvi_4039 0.11 -1.9 4,843,402 + Echvi_4039 0.13 -1.2 4,843,402 + Echvi_4039 0.13 -0.0 4,843,403 - Echvi_4039 0.13 -0.3 4,843,419 + Echvi_4039 0.14 -1.2 4,843,493 + Echvi_4039 0.17 -0.5 4,843,502 + Echvi_4039 0.17 +0.8 4,843,597 + Echvi_4039 0.20 +0.7 4,843,598 - Echvi_4039 0.20 +0.4 4,843,598 - Echvi_4039 0.20 -1.4 4,843,598 - Echvi_4039 0.20 +0.8 4,843,632 + Echvi_4039 0.22 -1.3 4,843,685 + Echvi_4039 0.24 -2.9 4,843,685 + Echvi_4039 0.24 +0.4 4,843,685 + Echvi_4039 0.24 +0.5 4,843,686 - Echvi_4039 0.24 +1.8 4,843,686 - Echvi_4039 0.24 -0.6 4,843,697 + Echvi_4039 0.24 +1.6 4,843,794 + Echvi_4039 0.27 +0.4 4,843,795 - Echvi_4039 0.27 +0.2 4,843,795 - Echvi_4039 0.27 +2.8 4,843,799 - Echvi_4039 0.28 +0.1 4,843,970 - Echvi_4039 0.34 +0.3 4,844,026 - Echvi_4039 0.36 -0.7 4,844,044 + Echvi_4039 0.36 -0.5 4,844,213 + Echvi_4039 0.43 -0.2 4,844,213 + Echvi_4039 0.43 -0.9 4,844,278 - Echvi_4039 0.45 +0.4 4,844,297 + Echvi_4039 0.46 -0.1 4,844,298 - Echvi_4039 0.46 -0.9 4,844,405 + Echvi_4039 0.49 +1.0 4,844,405 + Echvi_4039 0.49 +0.5 4,844,405 + Echvi_4039 0.49 -0.6 4,844,406 - Echvi_4039 0.49 -0.0 4,844,577 - Echvi_4039 0.56 -0.2 4,844,600 + Echvi_4039 0.56 +0.1 4,844,613 - Echvi_4039 0.57 -0.6 4,844,614 + Echvi_4039 0.57 -0.2 4,844,614 + Echvi_4039 0.57 -0.3 4,844,614 + Echvi_4039 0.57 -0.4 4,844,711 + Echvi_4039 0.60 -0.2 4,844,747 + Echvi_4039 0.62 -0.6 4,844,748 - Echvi_4039 0.62 +0.7 4,844,752 + Echvi_4039 0.62 -0.2 4,844,782 - Echvi_4039 0.63 -1.2 4,844,787 - Echvi_4039 0.63 -0.3 4,844,787 - Echvi_4039 0.63 +0.0 4,844,787 - Echvi_4039 0.63 +0.0 4,844,787 - Echvi_4039 0.63 +0.8 4,844,800 + +1.8 4,844,852 - Echvi_4039 0.66 -1.3 4,844,852 - Echvi_4039 0.66 -0.7 4,844,861 + Echvi_4039 0.66 +0.8 4,844,862 - Echvi_4039 0.66 -0.4 4,844,881 + Echvi_4039 0.67 +0.8 4,844,882 - Echvi_4039 0.67 -0.2 4,844,892 - Echvi_4039 0.67 -0.1 4,844,912 + Echvi_4039 0.68 +0.3 4,844,912 + Echvi_4039 0.68 -1.3 4,844,913 - +0.8 4,844,913 - Echvi_4039 0.68 +0.7 4,844,913 - Echvi_4039 0.68 +2.8 4,844,967 + Echvi_4039 0.70 -0.5 4,844,967 + Echvi_4039 0.70 +0.8 4,845,042 - Echvi_4039 0.72 +0.6 4,845,071 + Echvi_4039 0.73 +0.8 4,845,071 + Echvi_4039 0.73 -1.2 4,845,072 - Echvi_4039 0.73 +0.2 4,845,078 + +1.8 4,845,081 + Echvi_4039 0.74 +0.2 4,845,081 + Echvi_4039 0.74 +0.5 4,845,081 + Echvi_4039 0.74 -0.2 4,845,096 - Echvi_4039 0.74 +0.6 4,845,100 + Echvi_4039 0.74 -0.7 4,845,144 + Echvi_4039 0.76 -0.2 4,845,257 - Echvi_4039 0.80 +0.1 4,845,267 + Echvi_4039 0.80 -0.3 4,845,268 - Echvi_4039 0.80 -3.6 4,845,268 - Echvi_4039 0.80 -1.6 4,845,287 + Echvi_4039 0.81 +0.8 4,845,288 - Echvi_4039 0.81 +0.0 4,845,288 - Echvi_4039 0.81 -0.0 4,845,391 + Echvi_4039 0.85 +0.8 4,845,391 + Echvi_4039 0.85 +0.3 4,845,392 - Echvi_4039 0.85 +1.2 4,845,525 + Echvi_4039 0.90 -1.0 4,845,526 - Echvi_4039 0.90 +0.0 4,845,555 + -0.2 4,845,556 - +0.4 4,845,575 - -0.0 4,845,655 + +0.6 4,845,656 - +1.0 4,845,656 - +0.5 4,845,656 - -1.3 4,845,683 + -0.8 4,845,683 + +0.0 4,845,684 - -0.2 4,845,684 - +0.6 4,845,684 - +0.4 4,845,684 - -0.1 4,845,754 - -0.4 4,845,754 - -0.3 4,845,794 - +1.5 4,845,802 - -0.7 4,845,826 + -0.7 4,845,881 + -0.5 4,845,884 + +2.2 4,845,886 + -0.7 4,845,946 - -1.0 4,845,950 + +0.7 4,845,951 - +1.0 4,845,958 + +0.7 4,845,958 + -0.7 4,845,970 - -1.4 4,845,972 + -0.7 4,845,972 + +0.8 4,845,973 - -0.0 4,845,986 + +0.8 4,845,986 + +0.6 4,845,986 + +0.3 4,845,987 - -0.5 4,845,987 - +0.6 4,846,008 - -1.3 4,846,094 + Echvi_4040 0.12 -0.3 4,846,094 + Echvi_4040 0.12 +0.0 4,846,166 + Echvi_4040 0.18 +0.4 4,846,166 + Echvi_4040 0.18 -0.1 4,846,166 + Echvi_4040 0.18 +1.6 4,846,166 + Echvi_4040 0.18 -2.7 4,846,167 - Echvi_4040 0.19 -1.5 4,846,167 - Echvi_4040 0.19 +0.1 4,846,167 - Echvi_4040 0.19 -0.3 4,846,167 - Echvi_4040 0.19 -0.2 4,846,281 - Echvi_4040 0.29 -1.1 4,846,298 - Echvi_4040 0.31 -0.5 4,846,303 + Echvi_4040 0.32 -0.4 4,846,334 + Echvi_4040 0.34 -0.1 4,846,334 + Echvi_4040 0.34 -1.4 4,846,453 - Echvi_4040 0.46 -2.0 4,846,456 + Echvi_4040 0.46 -0.3 4,846,456 + Echvi_4040 0.46 +0.1 4,846,456 + Echvi_4040 0.46 -0.8 4,846,456 + Echvi_4040 0.46 -0.7 4,846,456 + Echvi_4040 0.46 -0.6 4,846,457 - Echvi_4040 0.46 +1.0 4,846,472 - Echvi_4040 0.48 -1.0 4,846,472 - Echvi_4040 0.48 -0.2 4,846,472 - Echvi_4040 0.48 -0.3 4,846,472 - Echvi_4040 0.48 +0.7 4,846,570 - Echvi_4040 0.57 -0.7 4,846,575 - Echvi_4040 0.57 +1.1 4,846,591 - Echvi_4040 0.59 +0.3 4,846,620 + Echvi_4040 0.62 +0.1 4,846,621 - Echvi_4040 0.62 -1.4 4,846,621 - Echvi_4040 0.62 -0.2 4,846,621 - Echvi_4040 0.62 -0.2 4,846,643 + Echvi_4040 0.64 -0.5 4,846,712 + Echvi_4040 0.71 -0.4 4,846,713 - Echvi_4040 0.71 -1.2 4,846,723 + Echvi_4040 0.72 +1.1 4,846,724 - Echvi_4040 0.72 -0.3 4,846,724 - Echvi_4040 0.72 -0.7 4,846,724 - Echvi_4040 0.72 -0.1 4,846,724 - Echvi_4040 0.72 -0.3 4,846,726 - Echvi_4040 0.72 -1.2 4,846,726 - Echvi_4040 0.72 +0.8 4,846,729 - Echvi_4040 0.72 -1.1 4,846,749 - Echvi_4040 0.74 -0.3 4,846,787 - Echvi_4040 0.78 +0.0 4,846,787 - Echvi_4040 0.78 +0.3 4,846,787 - Echvi_4040 0.78 +0.9 4,846,787 - Echvi_4040 0.78 -0.7 4,846,791 + Echvi_4040 0.78 -1.2
Or see this region's nucleotide sequence