Experiment: m.b. Spectinomycin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0675 and B158DRAFT_0676 are separated by 0 nucleotides B158DRAFT_0676 and B158DRAFT_0677 are separated by 124 nucleotides B158DRAFT_0677 and B158DRAFT_0678 are separated by 29 nucleotides
B158DRAFT_0675: B158DRAFT_0675 - ADP-heptose:LPS heptosyltransferase, at 677,270 to 678,298
_0675
B158DRAFT_0676: B158DRAFT_0676 - Lauroyl/myristoyl acyltransferase, at 678,299 to 679,789
_0676
B158DRAFT_0677: B158DRAFT_0677 - Uncharacterized small membrane protein, at 679,914 to 680,294
_0677
B158DRAFT_0678: B158DRAFT_0678 - TIGR02444 family protein, at 680,324 to 680,830
_0678
Position (kb) 678
679
680 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 677.352 kb on + strand at 677.352 kb on + strand at 677.398 kb on - strand, within B158DRAFT_0675 at 677.407 kb on + strand, within B158DRAFT_0675 at 677.415 kb on - strand, within B158DRAFT_0675 at 677.522 kb on + strand, within B158DRAFT_0675 at 677.522 kb on + strand, within B158DRAFT_0675 at 677.530 kb on - strand, within B158DRAFT_0675 at 677.662 kb on - strand, within B158DRAFT_0675 at 677.705 kb on + strand, within B158DRAFT_0675 at 677.705 kb on + strand, within B158DRAFT_0675 at 677.715 kb on + strand, within B158DRAFT_0675 at 677.725 kb on - strand, within B158DRAFT_0675 at 677.746 kb on - strand, within B158DRAFT_0675 at 677.780 kb on + strand, within B158DRAFT_0675 at 677.787 kb on + strand, within B158DRAFT_0675 at 677.795 kb on - strand, within B158DRAFT_0675 at 677.795 kb on - strand, within B158DRAFT_0675 at 677.827 kb on + strand, within B158DRAFT_0675 at 677.855 kb on - strand, within B158DRAFT_0675 at 678.005 kb on + strand, within B158DRAFT_0675 at 678.065 kb on + strand, within B158DRAFT_0675 at 678.073 kb on - strand, within B158DRAFT_0675 at 678.096 kb on + strand, within B158DRAFT_0675 at 678.096 kb on + strand, within B158DRAFT_0675 at 678.096 kb on + strand, within B158DRAFT_0675 at 678.126 kb on + strand, within B158DRAFT_0675 at 678.144 kb on - strand, within B158DRAFT_0675 at 678.144 kb on - strand, within B158DRAFT_0675 at 678.167 kb on + strand, within B158DRAFT_0675 at 678.167 kb on - strand, within B158DRAFT_0675 at 678.175 kb on - strand, within B158DRAFT_0675 at 678.218 kb on + strand at 678.221 kb on - strand at 678.249 kb on + strand at 678.249 kb on + strand at 678.257 kb on - strand at 678.257 kb on - strand at 678.309 kb on + strand at 678.311 kb on - strand at 678.317 kb on - strand at 678.324 kb on + strand at 678.522 kb on - strand, within B158DRAFT_0676 at 678.532 kb on - strand, within B158DRAFT_0676 at 678.532 kb on - strand, within B158DRAFT_0676 at 678.553 kb on + strand, within B158DRAFT_0676 at 678.597 kb on - strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.610 kb on + strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.618 kb on - strand, within B158DRAFT_0676 at 678.652 kb on + strand, within B158DRAFT_0676 at 678.661 kb on + strand, within B158DRAFT_0676 at 678.692 kb on + strand, within B158DRAFT_0676 at 678.754 kb on + strand, within B158DRAFT_0676 at 678.754 kb on + strand, within B158DRAFT_0676 at 678.754 kb on + strand, within B158DRAFT_0676 at 678.754 kb on + strand, within B158DRAFT_0676 at 678.754 kb on + strand, within B158DRAFT_0676 at 678.762 kb on - strand, within B158DRAFT_0676 at 678.762 kb on - strand, within B158DRAFT_0676 at 678.762 kb on - strand, within B158DRAFT_0676 at 678.762 kb on - strand, within B158DRAFT_0676 at 678.798 kb on + strand, within B158DRAFT_0676 at 678.830 kb on + strand, within B158DRAFT_0676 at 678.838 kb on - strand, within B158DRAFT_0676 at 678.844 kb on - strand, within B158DRAFT_0676 at 678.868 kb on + strand, within B158DRAFT_0676 at 678.876 kb on - strand, within B158DRAFT_0676 at 678.944 kb on - strand, within B158DRAFT_0676 at 678.957 kb on + strand, within B158DRAFT_0676 at 678.965 kb on - strand, within B158DRAFT_0676 at 678.965 kb on - strand, within B158DRAFT_0676 at 678.965 kb on - strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.975 kb on - strand, within B158DRAFT_0676 at 678.975 kb on - strand, within B158DRAFT_0676 at 679.031 kb on - strand, within B158DRAFT_0676 at 679.052 kb on + strand, within B158DRAFT_0676 at 679.060 kb on - strand, within B158DRAFT_0676 at 679.078 kb on - strand, within B158DRAFT_0676 at 679.108 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.124 kb on - strand, within B158DRAFT_0676 at 679.138 kb on + strand, within B158DRAFT_0676 at 679.156 kb on - strand, within B158DRAFT_0676 at 679.226 kb on - strand, within B158DRAFT_0676 at 679.291 kb on + strand, within B158DRAFT_0676 at 679.315 kb on + strand, within B158DRAFT_0676 at 679.320 kb on + strand, within B158DRAFT_0676 at 679.320 kb on + strand, within B158DRAFT_0676 at 679.366 kb on + strand, within B158DRAFT_0676 at 679.366 kb on + strand, within B158DRAFT_0676 at 679.366 kb on + strand, within B158DRAFT_0676 at 679.407 kb on - strand, within B158DRAFT_0676 at 679.407 kb on - strand, within B158DRAFT_0676 at 679.412 kb on - strand, within B158DRAFT_0676 at 679.468 kb on + strand, within B158DRAFT_0676 at 679.512 kb on + strand, within B158DRAFT_0676 at 679.512 kb on + strand, within B158DRAFT_0676 at 679.521 kb on - strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.545 kb on + strand, within B158DRAFT_0676 at 679.581 kb on + strand, within B158DRAFT_0676 at 679.588 kb on + strand, within B158DRAFT_0676 at 679.588 kb on + strand, within B158DRAFT_0676 at 679.593 kb on + strand, within B158DRAFT_0676 at 679.593 kb on + strand, within B158DRAFT_0676 at 679.593 kb on + strand, within B158DRAFT_0676 at 679.596 kb on - strand, within B158DRAFT_0676 at 679.601 kb on - strand, within B158DRAFT_0676 at 679.636 kb on + strand, within B158DRAFT_0676 at 679.657 kb on - strand at 679.673 kb on + strand at 679.699 kb on - strand at 679.709 kb on + strand at 679.714 kb on + strand at 679.883 kb on + strand at 679.884 kb on - strand at 679.891 kb on - strand at 679.893 kb on + strand at 679.946 kb on + strand at 679.960 kb on + strand, within B158DRAFT_0677 at 679.965 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.998 kb on - strand, within B158DRAFT_0677 at 680.011 kb on + strand, within B158DRAFT_0677 at 680.110 kb on - strand, within B158DRAFT_0677 at 680.110 kb on - strand, within B158DRAFT_0677 at 680.110 kb on - strand, within B158DRAFT_0677 at 680.163 kb on - strand, within B158DRAFT_0677 at 680.255 kb on - strand, within B158DRAFT_0677 at 680.255 kb on - strand, within B158DRAFT_0677 at 680.262 kb on + strand at 680.262 kb on + strand at 680.262 kb on + strand at 680.270 kb on - strand at 680.270 kb on - strand at 680.283 kb on - strand at 680.283 kb on - strand at 680.323 kb on - strand at 680.377 kb on - strand, within B158DRAFT_0678 at 680.409 kb on - strand, within B158DRAFT_0678 at 680.409 kb on - strand, within B158DRAFT_0678 at 680.423 kb on + strand, within B158DRAFT_0678 at 680.423 kb on + strand, within B158DRAFT_0678 at 680.441 kb on - strand, within B158DRAFT_0678 at 680.480 kb on - strand, within B158DRAFT_0678 at 680.480 kb on - strand, within B158DRAFT_0678 at 680.480 kb on - strand, within B158DRAFT_0678 at 680.488 kb on - strand, within B158DRAFT_0678 at 680.488 kb on - strand, within B158DRAFT_0678 at 680.531 kb on + strand, within B158DRAFT_0678 at 680.539 kb on - strand, within B158DRAFT_0678 at 680.539 kb on - strand, within B158DRAFT_0678 at 680.566 kb on - strand, within B158DRAFT_0678 at 680.666 kb on + strand, within B158DRAFT_0678 at 680.666 kb on + strand, within B158DRAFT_0678 at 680.666 kb on + strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.770 kb on + strand, within B158DRAFT_0678 at 680.771 kb on + strand, within B158DRAFT_0678 at 680.777 kb on + strand, within B158DRAFT_0678
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.1 mg/ml remove 677,352 + -0.1 677,352 + -2.5 677,398 - B158DRAFT_0675 0.12 -0.0 677,407 + B158DRAFT_0675 0.13 -0.1 677,415 - B158DRAFT_0675 0.14 +0.1 677,522 + B158DRAFT_0675 0.24 -0.2 677,522 + B158DRAFT_0675 0.24 -0.1 677,530 - B158DRAFT_0675 0.25 -0.4 677,662 - B158DRAFT_0675 0.38 -0.4 677,705 + B158DRAFT_0675 0.42 -0.3 677,705 + B158DRAFT_0675 0.42 -0.2 677,715 + B158DRAFT_0675 0.43 -0.2 677,725 - B158DRAFT_0675 0.44 -0.1 677,746 - B158DRAFT_0675 0.46 +0.2 677,780 + B158DRAFT_0675 0.50 +0.1 677,787 + B158DRAFT_0675 0.50 -0.2 677,795 - B158DRAFT_0675 0.51 +0.2 677,795 - B158DRAFT_0675 0.51 -0.1 677,827 + B158DRAFT_0675 0.54 -0.2 677,855 - B158DRAFT_0675 0.57 +0.8 678,005 + B158DRAFT_0675 0.71 -0.2 678,065 + B158DRAFT_0675 0.77 -0.5 678,073 - B158DRAFT_0675 0.78 -0.0 678,096 + B158DRAFT_0675 0.80 -0.4 678,096 + B158DRAFT_0675 0.80 -0.1 678,096 + B158DRAFT_0675 0.80 +0.1 678,126 + B158DRAFT_0675 0.83 +0.4 678,144 - B158DRAFT_0675 0.85 +0.1 678,144 - B158DRAFT_0675 0.85 -0.0 678,167 + B158DRAFT_0675 0.87 -0.6 678,167 - B158DRAFT_0675 0.87 +0.1 678,175 - B158DRAFT_0675 0.88 +0.1 678,218 + -0.4 678,221 - +0.2 678,249 + +0.2 678,249 + -0.3 678,257 - -0.5 678,257 - -0.5 678,309 + +0.4 678,311 - -1.4 678,317 - -0.2 678,324 + +0.1 678,522 - B158DRAFT_0676 0.15 -0.9 678,532 - B158DRAFT_0676 0.16 +0.2 678,532 - B158DRAFT_0676 0.16 -0.4 678,553 + B158DRAFT_0676 0.17 -0.5 678,597 - B158DRAFT_0676 0.20 -1.0 678,610 + B158DRAFT_0676 0.21 -1.1 678,610 + B158DRAFT_0676 0.21 -1.2 678,610 + B158DRAFT_0676 0.21 -0.4 678,610 + B158DRAFT_0676 0.21 -2.6 678,610 + B158DRAFT_0676 0.21 -0.8 678,610 + B158DRAFT_0676 0.21 -1.0 678,610 + B158DRAFT_0676 0.21 -0.2 678,610 + B158DRAFT_0676 0.21 -0.5 678,610 + B158DRAFT_0676 0.21 -0.9 678,610 + B158DRAFT_0676 0.21 -0.5 678,618 - B158DRAFT_0676 0.21 -0.9 678,618 - B158DRAFT_0676 0.21 -0.6 678,618 - B158DRAFT_0676 0.21 -1.6 678,618 - B158DRAFT_0676 0.21 -0.4 678,618 - B158DRAFT_0676 0.21 +0.8 678,618 - B158DRAFT_0676 0.21 -0.7 678,618 - B158DRAFT_0676 0.21 -1.1 678,652 + B158DRAFT_0676 0.24 -1.2 678,661 + B158DRAFT_0676 0.24 -0.4 678,692 + B158DRAFT_0676 0.26 -0.9 678,754 + B158DRAFT_0676 0.31 +0.1 678,754 + B158DRAFT_0676 0.31 +0.3 678,754 + B158DRAFT_0676 0.31 +0.2 678,754 + B158DRAFT_0676 0.31 -0.2 678,754 + B158DRAFT_0676 0.31 -1.0 678,762 - B158DRAFT_0676 0.31 -0.3 678,762 - B158DRAFT_0676 0.31 +0.6 678,762 - B158DRAFT_0676 0.31 -0.3 678,762 - B158DRAFT_0676 0.31 -0.2 678,798 + B158DRAFT_0676 0.33 -1.2 678,830 + B158DRAFT_0676 0.36 -1.6 678,838 - B158DRAFT_0676 0.36 -0.4 678,844 - B158DRAFT_0676 0.37 +0.5 678,868 + B158DRAFT_0676 0.38 -0.0 678,876 - B158DRAFT_0676 0.39 +0.2 678,944 - B158DRAFT_0676 0.43 -0.5 678,957 + B158DRAFT_0676 0.44 -1.4 678,965 - B158DRAFT_0676 0.45 -2.6 678,965 - B158DRAFT_0676 0.45 -2.1 678,965 - B158DRAFT_0676 0.45 -2.0 678,967 + B158DRAFT_0676 0.45 -2.3 678,967 + B158DRAFT_0676 0.45 -2.6 678,967 + B158DRAFT_0676 0.45 -3.0 678,967 + B158DRAFT_0676 0.45 -1.9 678,975 - B158DRAFT_0676 0.45 -1.6 678,975 - B158DRAFT_0676 0.45 -2.1 679,031 - B158DRAFT_0676 0.49 -1.3 679,052 + B158DRAFT_0676 0.51 -3.0 679,060 - B158DRAFT_0676 0.51 -1.4 679,078 - B158DRAFT_0676 0.52 -1.8 679,108 + B158DRAFT_0676 0.54 -1.4 679,116 + B158DRAFT_0676 0.55 -3.4 679,116 + B158DRAFT_0676 0.55 +0.1 679,116 + B158DRAFT_0676 0.55 -2.6 679,116 + B158DRAFT_0676 0.55 -0.1 679,124 - B158DRAFT_0676 0.55 -2.2 679,138 + B158DRAFT_0676 0.56 -1.9 679,156 - B158DRAFT_0676 0.57 -2.0 679,226 - B158DRAFT_0676 0.62 -1.2 679,291 + B158DRAFT_0676 0.67 -2.8 679,315 + B158DRAFT_0676 0.68 +0.1 679,320 + B158DRAFT_0676 0.68 -0.3 679,320 + B158DRAFT_0676 0.68 -3.9 679,366 + B158DRAFT_0676 0.72 -2.9 679,366 + B158DRAFT_0676 0.72 -2.1 679,366 + B158DRAFT_0676 0.72 -2.7 679,407 - B158DRAFT_0676 0.74 -1.8 679,407 - B158DRAFT_0676 0.74 -2.2 679,412 - B158DRAFT_0676 0.75 -2.2 679,468 + B158DRAFT_0676 0.78 -1.7 679,512 + B158DRAFT_0676 0.81 -1.9 679,512 + B158DRAFT_0676 0.81 -1.2 679,521 - B158DRAFT_0676 0.82 -1.9 679,523 + B158DRAFT_0676 0.82 -2.4 679,523 + B158DRAFT_0676 0.82 -1.5 679,523 + B158DRAFT_0676 0.82 -1.2 679,523 + B158DRAFT_0676 0.82 -1.9 679,531 - B158DRAFT_0676 0.83 -4.3 679,531 - B158DRAFT_0676 0.83 -2.9 679,531 - B158DRAFT_0676 0.83 -1.9 679,531 - B158DRAFT_0676 0.83 -1.5 679,531 - B158DRAFT_0676 0.83 -1.4 679,531 - B158DRAFT_0676 0.83 -0.9 679,531 - B158DRAFT_0676 0.83 -2.5 679,531 - B158DRAFT_0676 0.83 -2.7 679,545 + B158DRAFT_0676 0.84 -2.2 679,581 + B158DRAFT_0676 0.86 -2.3 679,588 + B158DRAFT_0676 0.86 -1.4 679,588 + B158DRAFT_0676 0.86 -1.3 679,593 + B158DRAFT_0676 0.87 -2.5 679,593 + B158DRAFT_0676 0.87 -0.8 679,593 + B158DRAFT_0676 0.87 -1.6 679,596 - B158DRAFT_0676 0.87 -1.8 679,601 - B158DRAFT_0676 0.87 -2.3 679,636 + B158DRAFT_0676 0.90 -1.7 679,657 - -2.3 679,673 + -0.5 679,699 - -1.1 679,709 + -1.5 679,714 + -0.7 679,883 + -0.2 679,884 - -0.2 679,891 - -0.2 679,893 + +0.1 679,946 + -0.1 679,960 + B158DRAFT_0677 0.12 -0.1 679,965 + B158DRAFT_0677 0.13 +0.1 679,990 + B158DRAFT_0677 0.20 +0.1 679,990 + B158DRAFT_0677 0.20 -0.1 679,990 + B158DRAFT_0677 0.20 -0.3 679,990 + B158DRAFT_0677 0.20 -0.2 679,998 - B158DRAFT_0677 0.22 -0.2 680,011 + B158DRAFT_0677 0.25 -0.3 680,110 - B158DRAFT_0677 0.51 +0.1 680,110 - B158DRAFT_0677 0.51 +0.9 680,110 - B158DRAFT_0677 0.51 -0.3 680,163 - B158DRAFT_0677 0.65 -0.3 680,255 - B158DRAFT_0677 0.90 -0.4 680,255 - B158DRAFT_0677 0.90 +0.3 680,262 + -0.3 680,262 + -0.0 680,262 + -0.4 680,270 - -0.1 680,270 - -0.2 680,283 - -0.1 680,283 - +0.1 680,323 - -0.4 680,377 - B158DRAFT_0678 0.10 +0.1 680,409 - B158DRAFT_0678 0.17 -0.3 680,409 - B158DRAFT_0678 0.17 -0.1 680,423 + B158DRAFT_0678 0.20 -0.0 680,423 + B158DRAFT_0678 0.20 +0.2 680,441 - B158DRAFT_0678 0.23 -0.0 680,480 - B158DRAFT_0678 0.31 -0.3 680,480 - B158DRAFT_0678 0.31 -1.1 680,480 - B158DRAFT_0678 0.31 -0.0 680,488 - B158DRAFT_0678 0.32 +0.1 680,488 - B158DRAFT_0678 0.32 -1.0 680,531 + B158DRAFT_0678 0.41 -0.3 680,539 - B158DRAFT_0678 0.42 -0.4 680,539 - B158DRAFT_0678 0.42 +0.1 680,566 - B158DRAFT_0678 0.48 -0.3 680,666 + B158DRAFT_0678 0.67 -0.0 680,666 + B158DRAFT_0678 0.67 -0.3 680,666 + B158DRAFT_0678 0.67 -0.0 680,674 - B158DRAFT_0678 0.69 +0.3 680,674 - B158DRAFT_0678 0.69 -1.7 680,674 - B158DRAFT_0678 0.69 -0.1 680,674 - B158DRAFT_0678 0.69 -0.0 680,770 + B158DRAFT_0678 0.88 +0.4 680,771 + B158DRAFT_0678 0.88 +0.2 680,777 + B158DRAFT_0678 0.89 -0.4
Or see this region's nucleotide sequence