Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3687

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3686 and PfGW456L13_3687 are separated by 195 nucleotidesPfGW456L13_3687 and PfGW456L13_3688 are separated by 56 nucleotidesPfGW456L13_3688 and PfGW456L13_3689 are separated by 106 nucleotides PfGW456L13_3686 - Putative SigmaB asociated two-component system sensor protein, at 4,143,874 to 4,148,727 _3686 PfGW456L13_3687 - Two-component regulator, at 4,148,923 to 4,149,978 _3687 PfGW456L13_3688 - putative protein, at 4,150,035 to 4,150,775 _3688 PfGW456L13_3689 - TonB-dependent receptor, at 4,150,882 to 4,153,008 _3689 Position (kb) 4148 4149 4150Strain fitness (log2 ratio) -2 -1 0 1 2at 4148.057 kb on - strand, within PfGW456L13_3686at 4148.161 kb on + strand, within PfGW456L13_3686at 4148.161 kb on + strand, within PfGW456L13_3686at 4148.162 kb on - strand, within PfGW456L13_3686at 4148.279 kb on + strandat 4148.280 kb on - strandat 4148.335 kb on + strandat 4148.336 kb on - strandat 4148.336 kb on - strandat 4148.336 kb on - strandat 4148.397 kb on + strandat 4148.398 kb on - strandat 4148.471 kb on + strandat 4148.471 kb on + strandat 4148.472 kb on - strandat 4148.565 kb on + strandat 4148.565 kb on + strandat 4148.565 kb on + strandat 4148.566 kb on - strandat 4148.662 kb on + strandat 4148.662 kb on + strandat 4148.663 kb on - strandat 4148.694 kb on - strandat 4148.694 kb on - strandat 4148.694 kb on - strandat 4148.694 kb on - strandat 4148.719 kb on + strandat 4148.720 kb on - strandat 4148.720 kb on - strandat 4148.840 kb on + strandat 4148.840 kb on + strandat 4148.841 kb on - strandat 4148.841 kb on - strandat 4148.841 kb on - strandat 4148.841 kb on - strandat 4148.844 kb on + strandat 4148.844 kb on + strandat 4148.844 kb on + strandat 4148.844 kb on + strandat 4148.844 kb on + strandat 4148.844 kb on + strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4148.845 kb on - strandat 4149.035 kb on + strand, within PfGW456L13_3687at 4149.035 kb on + strand, within PfGW456L13_3687at 4149.147 kb on + strand, within PfGW456L13_3687at 4149.147 kb on + strand, within PfGW456L13_3687at 4149.148 kb on - strand, within PfGW456L13_3687at 4149.148 kb on - strand, within PfGW456L13_3687at 4149.148 kb on - strand, within PfGW456L13_3687at 4149.198 kb on + strand, within PfGW456L13_3687at 4149.199 kb on - strand, within PfGW456L13_3687at 4149.217 kb on + strand, within PfGW456L13_3687at 4149.217 kb on + strand, within PfGW456L13_3687at 4149.218 kb on - strandat 4149.218 kb on - strand, within PfGW456L13_3687at 4149.218 kb on - strand, within PfGW456L13_3687at 4149.218 kb on - strand, within PfGW456L13_3687at 4149.218 kb on - strand, within PfGW456L13_3687at 4149.283 kb on + strand, within PfGW456L13_3687at 4149.284 kb on - strand, within PfGW456L13_3687at 4149.284 kb on - strand, within PfGW456L13_3687at 4149.359 kb on - strand, within PfGW456L13_3687at 4149.555 kb on + strand, within PfGW456L13_3687at 4149.836 kb on + strand, within PfGW456L13_3687at 4149.953 kb on + strandat 4150.024 kb on + strandat 4150.024 kb on + strandat 4150.024 kb on + strandat 4150.024 kb on + strandat 4150.024 kb on + strandat 4150.024 kb on + strandat 4150.025 kb on - strandat 4150.025 kb on - strandat 4150.025 kb on - strandat 4150.025 kb on - strandat 4150.059 kb on + strandat 4150.060 kb on - strandat 4150.060 kb on - strandat 4150.254 kb on + strand, within PfGW456L13_3688at 4150.255 kb on - strand, within PfGW456L13_3688at 4150.312 kb on + strand, within PfGW456L13_3688at 4150.393 kb on - strand, within PfGW456L13_3688at 4150.506 kb on + strand, within PfGW456L13_3688at 4150.506 kb on + strand, within PfGW456L13_3688at 4150.506 kb on + strand, within PfGW456L13_3688at 4150.506 kb on + strand, within PfGW456L13_3688at 4150.506 kb on + strand, within PfGW456L13_3688at 4150.507 kb on - strand, within PfGW456L13_3688at 4150.507 kb on - strand, within PfGW456L13_3688at 4150.507 kb on - strand, within PfGW456L13_3688at 4150.507 kb on - strand, within PfGW456L13_3688at 4150.548 kb on + strand, within PfGW456L13_3688at 4150.714 kb on - strandat 4150.739 kb on + strandat 4150.740 kb on - strandat 4150.740 kb on - strandat 4150.863 kb on + strandat 4150.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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4,148,057 - PfGW456L13_3686 0.86 +0.2
4,148,161 + PfGW456L13_3686 0.88 -0.9
4,148,161 + PfGW456L13_3686 0.88 +0.5
4,148,162 - PfGW456L13_3686 0.88 +0.5
4,148,279 + +0.4
4,148,280 - +0.4
4,148,335 + -0.1
4,148,336 - -0.0
4,148,336 - +0.1
4,148,336 - +1.8
4,148,397 + -0.1
4,148,398 - +0.2
4,148,471 + +2.4
4,148,471 + +0.8
4,148,472 - +0.9
4,148,565 + +0.4
4,148,565 + +0.5
4,148,565 + -0.3
4,148,566 - -0.6
4,148,662 + +0.9
4,148,662 + -0.6
4,148,663 - -1.2
4,148,694 - -0.9
4,148,694 - +0.5
4,148,694 - -0.8
4,148,694 - -0.5
4,148,719 + +2.5
4,148,720 - +0.4
4,148,720 - +0.2
4,148,840 + -0.5
4,148,840 + +0.2
4,148,841 - -0.4
4,148,841 - -2.4
4,148,841 - +0.1
4,148,841 - -0.2
4,148,844 + -0.5
4,148,844 + +0.4
4,148,844 + -0.9
4,148,844 + +1.4
4,148,844 + +0.0
4,148,844 + -0.8
4,148,845 - +0.4
4,148,845 - +1.4
4,148,845 - +0.9
4,148,845 - -0.0
4,148,845 - -0.2
4,148,845 - +0.7
4,148,845 - -0.3
4,148,845 - +0.4
4,149,035 + PfGW456L13_3687 0.11 +1.1
4,149,035 + PfGW456L13_3687 0.11 -1.0
4,149,147 + PfGW456L13_3687 0.21 +0.4
4,149,147 + PfGW456L13_3687 0.21 -1.0
4,149,148 - PfGW456L13_3687 0.21 +1.4
4,149,148 - PfGW456L13_3687 0.21 -0.1
4,149,148 - PfGW456L13_3687 0.21 +1.4
4,149,198 + PfGW456L13_3687 0.26 +0.5
4,149,199 - PfGW456L13_3687 0.26 +0.6
4,149,217 + PfGW456L13_3687 0.28 +1.0
4,149,217 + PfGW456L13_3687 0.28 +0.7
4,149,218 - +1.9
4,149,218 - PfGW456L13_3687 0.28 +0.6
4,149,218 - PfGW456L13_3687 0.28 -0.2
4,149,218 - PfGW456L13_3687 0.28 +0.3
4,149,218 - PfGW456L13_3687 0.28 +0.8
4,149,283 + PfGW456L13_3687 0.34 -0.2
4,149,284 - PfGW456L13_3687 0.34 +0.4
4,149,284 - PfGW456L13_3687 0.34 -0.8
4,149,359 - PfGW456L13_3687 0.41 +1.6
4,149,555 + PfGW456L13_3687 0.60 +1.4
4,149,836 + PfGW456L13_3687 0.86 -0.8
4,149,953 + +1.1
4,150,024 + +0.1
4,150,024 + -1.2
4,150,024 + +0.9
4,150,024 + -1.9
4,150,024 + -1.4
4,150,024 + +0.2
4,150,025 - -1.2
4,150,025 - -0.2
4,150,025 - +1.2
4,150,025 - +0.2
4,150,059 + -1.8
4,150,060 - -0.9
4,150,060 - -0.2
4,150,254 + PfGW456L13_3688 0.30 -0.7
4,150,255 - PfGW456L13_3688 0.30 -0.0
4,150,312 + PfGW456L13_3688 0.37 -0.2
4,150,393 - PfGW456L13_3688 0.48 +1.1
4,150,506 + PfGW456L13_3688 0.64 +0.4
4,150,506 + PfGW456L13_3688 0.64 +0.4
4,150,506 + PfGW456L13_3688 0.64 -0.4
4,150,506 + PfGW456L13_3688 0.64 -0.6
4,150,506 + PfGW456L13_3688 0.64 +0.0
4,150,507 - PfGW456L13_3688 0.64 +1.9
4,150,507 - PfGW456L13_3688 0.64 -1.2
4,150,507 - PfGW456L13_3688 0.64 -0.9
4,150,507 - PfGW456L13_3688 0.64 -0.1
4,150,548 + PfGW456L13_3688 0.69 -1.2
4,150,714 - +0.6
4,150,739 + -0.5
4,150,740 - +1.1
4,150,740 - -0.9
4,150,863 + -0.8
4,150,934 - -0.8

Or see this region's nucleotide sequence