Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2606

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2605 and PfGW456L13_2606 are separated by 202 nucleotidesPfGW456L13_2606 and PfGW456L13_2607 are separated by 125 nucleotidesPfGW456L13_2607 and PfGW456L13_2608 are separated by 2 nucleotides PfGW456L13_2605 - Membrane fusion component of tripartite multidrug resistance system, at 2,897,469 to 2,898,671 _2605 PfGW456L13_2606 - Inner membrane component of tripartite multidrug resistance system, at 2,898,874 to 2,900,406 _2606 PfGW456L13_2607 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 2,900,532 to 2,901,278 _2607 PfGW456L13_2608 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 2,901,281 to 2,901,784 _2608 Position (kb) 2898 2899 2900 2901Strain fitness (log2 ratio) -2 -1 0 1 2at 2898.166 kb on + strand, within PfGW456L13_2605at 2898.166 kb on + strand, within PfGW456L13_2605at 2898.167 kb on - strand, within PfGW456L13_2605at 2898.167 kb on - strand, within PfGW456L13_2605at 2898.309 kb on + strand, within PfGW456L13_2605at 2898.310 kb on - strand, within PfGW456L13_2605at 2898.310 kb on - strand, within PfGW456L13_2605at 2898.324 kb on - strand, within PfGW456L13_2605at 2898.324 kb on - strand, within PfGW456L13_2605at 2898.324 kb on - strand, within PfGW456L13_2605at 2898.327 kb on + strand, within PfGW456L13_2605at 2898.327 kb on + strand, within PfGW456L13_2605at 2898.328 kb on - strand, within PfGW456L13_2605at 2898.582 kb on + strandat 2898.582 kb on + strandat 2898.583 kb on - strandat 2899.366 kb on + strand, within PfGW456L13_2606at 2899.366 kb on + strand, within PfGW456L13_2606at 2899.366 kb on + strand, within PfGW456L13_2606at 2899.366 kb on + strand, within PfGW456L13_2606at 2899.366 kb on + strand, within PfGW456L13_2606at 2899.366 kb on + strand, within PfGW456L13_2606at 2899.366 kb on + strand, within PfGW456L13_2606at 2899.367 kb on - strand, within PfGW456L13_2606at 2899.367 kb on - strand, within PfGW456L13_2606at 2899.480 kb on + strand, within PfGW456L13_2606at 2899.480 kb on + strand, within PfGW456L13_2606at 2899.480 kb on + strand, within PfGW456L13_2606at 2899.481 kb on - strand, within PfGW456L13_2606at 2899.481 kb on - strand, within PfGW456L13_2606at 2899.481 kb on - strand, within PfGW456L13_2606at 2899.677 kb on + strand, within PfGW456L13_2606at 2899.678 kb on - strand, within PfGW456L13_2606at 2899.678 kb on - strand, within PfGW456L13_2606at 2899.678 kb on - strand, within PfGW456L13_2606at 2899.774 kb on + strand, within PfGW456L13_2606at 2899.774 kb on + strand, within PfGW456L13_2606at 2899.775 kb on - strand, within PfGW456L13_2606at 2899.849 kb on - strand, within PfGW456L13_2606at 2899.849 kb on - strand, within PfGW456L13_2606at 2899.852 kb on + strand, within PfGW456L13_2606at 2899.852 kb on + strand, within PfGW456L13_2606at 2899.852 kb on + strand, within PfGW456L13_2606at 2899.853 kb on - strand, within PfGW456L13_2606at 2899.853 kb on - strandat 2899.853 kb on - strand, within PfGW456L13_2606at 2899.853 kb on - strand, within PfGW456L13_2606at 2899.853 kb on - strand, within PfGW456L13_2606at 2899.853 kb on - strand, within PfGW456L13_2606at 2899.853 kb on - strand, within PfGW456L13_2606at 2899.853 kb on - strand, within PfGW456L13_2606at 2900.161 kb on + strand, within PfGW456L13_2606at 2900.162 kb on - strand, within PfGW456L13_2606at 2900.242 kb on + strand, within PfGW456L13_2606at 2900.242 kb on + strand, within PfGW456L13_2606at 2900.242 kb on + strand, within PfGW456L13_2606at 2900.242 kb on + strand, within PfGW456L13_2606at 2900.243 kb on - strand, within PfGW456L13_2606at 2900.243 kb on - strand, within PfGW456L13_2606at 2900.244 kb on + strandat 2900.245 kb on - strand, within PfGW456L13_2606at 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.278 kb on + strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.279 kb on - strandat 2900.299 kb on + strandat 2900.299 kb on + strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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2,898,166 + PfGW456L13_2605 0.58 +0.3
2,898,166 + PfGW456L13_2605 0.58 -0.5
2,898,167 - PfGW456L13_2605 0.58 +2.0
2,898,167 - PfGW456L13_2605 0.58 -0.7
2,898,309 + PfGW456L13_2605 0.70 -1.3
2,898,310 - PfGW456L13_2605 0.70 -0.8
2,898,310 - PfGW456L13_2605 0.70 +0.2
2,898,324 - PfGW456L13_2605 0.71 +0.5
2,898,324 - PfGW456L13_2605 0.71 +1.1
2,898,324 - PfGW456L13_2605 0.71 -0.4
2,898,327 + PfGW456L13_2605 0.71 +0.0
2,898,327 + PfGW456L13_2605 0.71 -0.5
2,898,328 - PfGW456L13_2605 0.71 +0.6
2,898,582 + -0.4
2,898,582 + +0.5
2,898,583 - +0.4
2,899,366 + PfGW456L13_2606 0.32 -0.0
2,899,366 + PfGW456L13_2606 0.32 -0.2
2,899,366 + PfGW456L13_2606 0.32 +1.2
2,899,366 + PfGW456L13_2606 0.32 +2.0
2,899,366 + PfGW456L13_2606 0.32 +0.3
2,899,366 + PfGW456L13_2606 0.32 +0.2
2,899,366 + PfGW456L13_2606 0.32 -1.6
2,899,367 - PfGW456L13_2606 0.32 -0.6
2,899,367 - PfGW456L13_2606 0.32 +0.6
2,899,480 + PfGW456L13_2606 0.40 -0.8
2,899,480 + PfGW456L13_2606 0.40 -0.1
2,899,480 + PfGW456L13_2606 0.40 +0.2
2,899,481 - PfGW456L13_2606 0.40 +0.7
2,899,481 - PfGW456L13_2606 0.40 -0.4
2,899,481 - PfGW456L13_2606 0.40 -2.0
2,899,677 + PfGW456L13_2606 0.52 +0.9
2,899,678 - PfGW456L13_2606 0.52 -1.0
2,899,678 - PfGW456L13_2606 0.52 +0.8
2,899,678 - PfGW456L13_2606 0.52 +0.7
2,899,774 + PfGW456L13_2606 0.59 -0.1
2,899,774 + PfGW456L13_2606 0.59 -0.3
2,899,775 - PfGW456L13_2606 0.59 -0.2
2,899,849 - PfGW456L13_2606 0.64 -0.6
2,899,849 - PfGW456L13_2606 0.64 +0.8
2,899,852 + PfGW456L13_2606 0.64 +0.2
2,899,852 + PfGW456L13_2606 0.64 -0.0
2,899,852 + PfGW456L13_2606 0.64 +0.3
2,899,853 - PfGW456L13_2606 0.64 +0.3
2,899,853 - -0.6
2,899,853 - PfGW456L13_2606 0.64 +1.8
2,899,853 - PfGW456L13_2606 0.64 +1.2
2,899,853 - PfGW456L13_2606 0.64 -0.4
2,899,853 - PfGW456L13_2606 0.64 -0.2
2,899,853 - PfGW456L13_2606 0.64 -0.5
2,899,853 - PfGW456L13_2606 0.64 -0.4
2,900,161 + PfGW456L13_2606 0.84 +0.0
2,900,162 - PfGW456L13_2606 0.84 -0.6
2,900,242 + PfGW456L13_2606 0.89 +0.2
2,900,242 + PfGW456L13_2606 0.89 +0.5
2,900,242 + PfGW456L13_2606 0.89 -0.5
2,900,242 + PfGW456L13_2606 0.89 -1.0
2,900,243 - PfGW456L13_2606 0.89 -0.3
2,900,243 - PfGW456L13_2606 0.89 -0.1
2,900,244 + +0.4
2,900,245 - PfGW456L13_2606 0.89 +0.6
2,900,278 + +0.8
2,900,278 + +0.1
2,900,278 + +0.3
2,900,278 + +0.6
2,900,278 + -1.6
2,900,278 + -0.9
2,900,278 + +0.1
2,900,278 + -1.9
2,900,278 + +0.6
2,900,278 + +0.5
2,900,278 + -0.6
2,900,279 - -1.1
2,900,279 - -1.3
2,900,279 - -0.2
2,900,279 - +0.4
2,900,279 - +0.8
2,900,279 - -1.0
2,900,279 - -0.4
2,900,279 - +0.4
2,900,279 - -0.4
2,900,279 - +0.4
2,900,279 - -0.9
2,900,299 + +0.1
2,900,299 + +0.5
2,900,300 - +0.7
2,900,300 - +0.1
2,900,300 - -0.1
2,900,300 - -1.9
2,900,300 - -1.4
2,900,300 - +0.4
2,900,300 - +0.3

Or see this region's nucleotide sequence