Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2378

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2377 and PfGW456L13_2378 are separated by 264 nucleotidesPfGW456L13_2378 and PfGW456L13_2379 are separated by 147 nucleotides PfGW456L13_2377 - Non-ribosomal peptide synthetase modules, pyoverdine??, at 2,622,082 to 2,633,886 _2377 PfGW456L13_2378 - Esterase/lipase, at 2,634,151 to 2,635,116 _2378 PfGW456L13_2379 - hypothetical protein, at 2,635,264 to 2,635,623 _2379 Position (kb) 2634 2635 2636Strain fitness (log2 ratio) -2 -1 0 1 2at 2633.189 kb on - strandat 2633.189 kb on - strandat 2633.260 kb on + strandat 2633.260 kb on + strandat 2633.260 kb on + strandat 2633.261 kb on - strandat 2633.884 kb on + strandat 2633.884 kb on + strandat 2633.885 kb on - strandat 2633.913 kb on + strandat 2633.913 kb on + strandat 2633.913 kb on + strandat 2633.913 kb on + strandat 2633.913 kb on + strandat 2633.913 kb on + strandat 2633.914 kb on - strandat 2633.914 kb on - strandat 2633.978 kb on - strandat 2634.087 kb on + strandat 2634.087 kb on + strandat 2634.087 kb on + strandat 2634.088 kb on - strandat 2634.112 kb on + strandat 2634.131 kb on - strandat 2634.143 kb on + strandat 2634.144 kb on - strandat 2634.182 kb on + strandat 2634.368 kb on - strand, within PfGW456L13_2378at 2634.412 kb on + strand, within PfGW456L13_2378at 2634.413 kb on - strand, within PfGW456L13_2378at 2634.413 kb on - strand, within PfGW456L13_2378at 2634.430 kb on + strand, within PfGW456L13_2378at 2634.430 kb on + strand, within PfGW456L13_2378at 2634.431 kb on - strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.550 kb on + strand, within PfGW456L13_2378at 2634.551 kb on - strand, within PfGW456L13_2378at 2634.551 kb on - strand, within PfGW456L13_2378at 2634.551 kb on - strandat 2634.551 kb on - strand, within PfGW456L13_2378at 2634.793 kb on + strand, within PfGW456L13_2378at 2634.794 kb on - strand, within PfGW456L13_2378at 2634.826 kb on + strand, within PfGW456L13_2378at 2634.826 kb on + strand, within PfGW456L13_2378at 2634.827 kb on - strand, within PfGW456L13_2378at 2634.827 kb on - strand, within PfGW456L13_2378at 2634.827 kb on - strand, within PfGW456L13_2378at 2634.835 kb on + strand, within PfGW456L13_2378at 2634.836 kb on - strand, within PfGW456L13_2378at 2634.883 kb on + strand, within PfGW456L13_2378at 2634.883 kb on + strand, within PfGW456L13_2378at 2634.884 kb on - strand, within PfGW456L13_2378at 2634.981 kb on + strand, within PfGW456L13_2378at 2634.982 kb on - strand, within PfGW456L13_2378at 2634.982 kb on - strand, within PfGW456L13_2378at 2635.265 kb on + strandat 2635.265 kb on + strandat 2635.265 kb on + strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.266 kb on - strandat 2635.575 kb on - strand, within PfGW456L13_2379at 2635.628 kb on - strandat 2635.628 kb on - strandat 2635.631 kb on + strandat 2635.631 kb on + strandat 2635.632 kb on - strandat 2635.632 kb on - strandat 2635.632 kb on - strandat 2635.637 kb on + strandat 2635.638 kb on - strandat 2635.638 kb on - strandat 2635.638 kb on - strandat 2635.638 kb on - strandat 2635.642 kb on + strandat 2635.665 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.695 kb on - strandat 2635.697 kb on + strandat 2635.698 kb on - strandat 2635.698 kb on - strandat 2635.783 kb on - strandat 2635.783 kb on - strandat 2635.814 kb on + strandat 2635.817 kb on + strandat 2635.817 kb on + strandat 2635.817 kb on + strandat 2635.817 kb on + strandat 2635.818 kb on - strandat 2635.897 kb on + strandat 2635.903 kb on + strandat 2635.939 kb on + strandat 2635.939 kb on + strandat 2635.939 kb on + strandat 2635.940 kb on - strandat 2636.025 kb on + strandat 2636.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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2,633,189 - -0.6
2,633,189 - -0.5
2,633,260 + -0.5
2,633,260 + -1.3
2,633,260 + -0.8
2,633,261 - -0.1
2,633,884 + +0.7
2,633,884 + +0.2
2,633,885 - -0.2
2,633,913 + +0.1
2,633,913 + -0.6
2,633,913 + +0.9
2,633,913 + -0.3
2,633,913 + +0.5
2,633,913 + +0.1
2,633,914 - +0.5
2,633,914 - -0.3
2,633,978 - +0.3
2,634,087 + +1.0
2,634,087 + +0.9
2,634,087 + +1.6
2,634,088 - +0.2
2,634,112 + -1.1
2,634,131 - -0.4
2,634,143 + -0.8
2,634,144 - +0.9
2,634,182 + -0.3
2,634,368 - PfGW456L13_2378 0.22 -1.3
2,634,412 + PfGW456L13_2378 0.27 -0.3
2,634,413 - PfGW456L13_2378 0.27 -0.1
2,634,413 - PfGW456L13_2378 0.27 -0.0
2,634,430 + PfGW456L13_2378 0.29 -0.7
2,634,430 + PfGW456L13_2378 0.29 +0.6
2,634,431 - PfGW456L13_2378 0.29 +1.3
2,634,550 + PfGW456L13_2378 0.41 +0.1
2,634,550 + PfGW456L13_2378 0.41 +0.5
2,634,550 + PfGW456L13_2378 0.41 -1.2
2,634,550 + PfGW456L13_2378 0.41 -0.5
2,634,550 + PfGW456L13_2378 0.41 -0.3
2,634,550 + PfGW456L13_2378 0.41 -2.0
2,634,550 + PfGW456L13_2378 0.41 +0.3
2,634,551 - PfGW456L13_2378 0.41 -2.4
2,634,551 - PfGW456L13_2378 0.41 -0.8
2,634,551 - -0.1
2,634,551 - PfGW456L13_2378 0.41 +0.1
2,634,793 + PfGW456L13_2378 0.66 +0.9
2,634,794 - PfGW456L13_2378 0.67 -0.2
2,634,826 + PfGW456L13_2378 0.70 -0.2
2,634,826 + PfGW456L13_2378 0.70 -0.3
2,634,827 - PfGW456L13_2378 0.70 -1.1
2,634,827 - PfGW456L13_2378 0.70 +0.7
2,634,827 - PfGW456L13_2378 0.70 -1.0
2,634,835 + PfGW456L13_2378 0.71 -0.5
2,634,836 - PfGW456L13_2378 0.71 +0.4
2,634,883 + PfGW456L13_2378 0.76 +0.0
2,634,883 + PfGW456L13_2378 0.76 +0.3
2,634,884 - PfGW456L13_2378 0.76 -0.5
2,634,981 + PfGW456L13_2378 0.86 -0.8
2,634,982 - PfGW456L13_2378 0.86 -0.5
2,634,982 - PfGW456L13_2378 0.86 +0.6
2,635,265 + +1.1
2,635,265 + -0.4
2,635,265 + +0.2
2,635,266 - +0.1
2,635,266 - +2.2
2,635,266 - -1.0
2,635,266 - -1.0
2,635,266 - -0.5
2,635,575 - PfGW456L13_2379 0.86 -0.5
2,635,628 - -0.4
2,635,628 - +0.9
2,635,631 + +0.4
2,635,631 + -0.5
2,635,632 - -0.5
2,635,632 - -0.5
2,635,632 - -1.3
2,635,637 + +0.4
2,635,638 - -1.0
2,635,638 - -0.5
2,635,638 - -0.1
2,635,638 - +0.1
2,635,642 + +2.2
2,635,665 - -0.5
2,635,695 - +1.1
2,635,695 - +0.3
2,635,695 - -1.1
2,635,695 - -0.9
2,635,695 - +0.2
2,635,697 + +0.1
2,635,698 - -0.2
2,635,698 - -0.9
2,635,783 - +0.4
2,635,783 - -0.3
2,635,814 + +0.9
2,635,817 + -0.8
2,635,817 + -0.7
2,635,817 + -2.3
2,635,817 + +0.7
2,635,818 - +0.6
2,635,897 + -0.3
2,635,903 + -1.0
2,635,939 + +0.2
2,635,939 + -0.5
2,635,939 + +1.6
2,635,940 - +1.0
2,636,025 + +0.1
2,636,025 + +0.1

Or see this region's nucleotide sequence