Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF485

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF484 and GFF485 overlap by 4 nucleotidesGFF485 and GFF486 overlap by 4 nucleotides GFF484 - FIG002337: predicted inner membrane protein, at 204,979 to 206,658 GFF484 GFF485 - FIG005119: putative inner membrane protein, at 206,655 to 206,846 GFF485 GFF486 - FIG005274: hypothetical protein, at 206,843 to 208,402 GFF486 Position (kb) 206 207Strain fitness (log2 ratio) -2 -1 0 1at 205.830 kb on - strand, within GFF484at 205.880 kb on - strand, within GFF484at 205.935 kb on + strand, within GFF484at 206.018 kb on + strand, within GFF484at 206.019 kb on - strand, within GFF484at 206.219 kb on - strand, within GFF484at 206.263 kb on + strand, within GFF484at 206.386 kb on - strand, within GFF484at 206.486 kb on - strand, within GFF484at 206.609 kb on + strandat 206.709 kb on + strand, within GFF485at 206.710 kb on - strand, within GFF485at 206.731 kb on - strand, within GFF485at 206.745 kb on - strand, within GFF485at 206.928 kb on - strandat 206.987 kb on + strandat 206.988 kb on - strandat 207.079 kb on + strand, within GFF486at 207.157 kb on + strand, within GFF486at 207.158 kb on - strand, within GFF486at 207.186 kb on - strand, within GFF486at 207.192 kb on - strand, within GFF486at 207.283 kb on + strand, within GFF486at 207.284 kb on - strand, within GFF486at 207.413 kb on - strand, within GFF486at 207.511 kb on + strand, within GFF486at 207.604 kb on + strand, within GFF486at 207.815 kb on + strand, within GFF486

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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205,830 - GFF484 0.51 -1.2
205,880 - GFF484 0.54 +0.9
205,935 + GFF484 0.57 +0.9
206,018 + GFF484 0.62 +0.1
206,019 - GFF484 0.62 +0.3
206,219 - GFF484 0.74 +0.3
206,263 + GFF484 0.76 +0.1
206,386 - GFF484 0.84 +0.0
206,486 - GFF484 0.90 -0.1
206,609 + -0.1
206,709 + GFF485 0.28 -0.0
206,710 - GFF485 0.29 +0.1
206,731 - GFF485 0.40 -0.7
206,745 - GFF485 0.47 -1.6
206,928 - -1.5
206,987 + +0.6
206,988 - -0.8
207,079 + GFF486 0.15 +1.6
207,157 + GFF486 0.20 -0.3
207,158 - GFF486 0.20 -0.3
207,186 - GFF486 0.22 -0.6
207,192 - GFF486 0.22 +0.1
207,283 + GFF486 0.28 +0.5
207,284 - GFF486 0.28 -0.2
207,413 - GFF486 0.37 +1.1
207,511 + GFF486 0.43 +0.1
207,604 + GFF486 0.49 -2.2
207,815 + GFF486 0.62 +0.3

Or see this region's nucleotide sequence