Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4573

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4571 and GFF4572 overlap by 1 nucleotidesGFF4572 and GFF4573 are separated by 159 nucleotidesGFF4573 and GFF4574 are separated by 354 nucleotides GFF4571 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 357,549 to 358,223 GFF4571 GFF4572 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 358,223 to 358,963 GFF4572 GFF4573 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 359,123 to 360,031 GFF4573 GFF4574 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 360,386 to 361,975 GFF4574 Position (kb) 359 360 361Strain fitness (log2 ratio) -3 -2 -1 0 1at 358.180 kb on + strandat 358.288 kb on + strandat 358.308 kb on + strand, within GFF4572at 358.308 kb on + strand, within GFF4572at 358.309 kb on - strand, within GFF4572at 358.498 kb on - strand, within GFF4572at 358.744 kb on + strand, within GFF4572at 358.744 kb on + strand, within GFF4572at 358.757 kb on + strand, within GFF4572at 358.761 kb on + strand, within GFF4572at 358.806 kb on - strand, within GFF4572at 358.819 kb on + strand, within GFF4572at 358.903 kb on - strandat 358.955 kb on + strandat 358.963 kb on + strandat 358.963 kb on + strandat 358.963 kb on + strandat 358.964 kb on - strandat 358.964 kb on - strandat 359.061 kb on + strandat 359.061 kb on + strandat 359.061 kb on + strandat 359.063 kb on + strandat 359.063 kb on + strandat 359.064 kb on - strandat 359.064 kb on - strandat 359.137 kb on + strandat 359.231 kb on - strand, within GFF4573at 359.323 kb on + strand, within GFF4573at 359.324 kb on - strand, within GFF4573at 359.425 kb on + strand, within GFF4573at 359.489 kb on - strand, within GFF4573at 359.492 kb on - strand, within GFF4573at 359.524 kb on + strand, within GFF4573at 359.525 kb on - strand, within GFF4573at 359.789 kb on - strand, within GFF4573at 359.865 kb on + strand, within GFF4573at 360.023 kb on + strandat 360.023 kb on + strandat 360.024 kb on - strandat 360.032 kb on - strandat 360.044 kb on + strandat 360.070 kb on + strandat 360.071 kb on - strandat 360.071 kb on - strandat 360.312 kb on - strandat 360.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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358,180 + +1.1
358,288 + -0.0
358,308 + GFF4572 0.11 -0.5
358,308 + GFF4572 0.11 +0.6
358,309 - GFF4572 0.12 -1.9
358,498 - GFF4572 0.37 -0.2
358,744 + GFF4572 0.70 +0.0
358,744 + GFF4572 0.70 -0.7
358,757 + GFF4572 0.72 +0.3
358,761 + GFF4572 0.73 +1.2
358,806 - GFF4572 0.79 -0.1
358,819 + GFF4572 0.80 -0.8
358,903 - -1.3
358,955 + +0.2
358,963 + +0.7
358,963 + -0.6
358,963 + -0.5
358,964 - -0.6
358,964 - -0.2
359,061 + -3.0
359,061 + +1.7
359,061 + -0.0
359,063 + +1.7
359,063 + -0.4
359,064 - -1.9
359,064 - +0.5
359,137 + -0.9
359,231 - GFF4573 0.12 -1.4
359,323 + GFF4573 0.22 -0.1
359,324 - GFF4573 0.22 -0.0
359,425 + GFF4573 0.33 +1.2
359,489 - GFF4573 0.40 -1.7
359,492 - GFF4573 0.41 +1.3
359,524 + GFF4573 0.44 -0.9
359,525 - GFF4573 0.44 -1.8
359,789 - GFF4573 0.73 -0.6
359,865 + GFF4573 0.82 -0.1
360,023 + -0.2
360,023 + +0.7
360,024 - -0.6
360,032 - -0.7
360,044 + +1.3
360,070 + +0.0
360,071 - +0.3
360,071 - +1.2
360,312 - -1.9
360,388 - +0.2

Or see this region's nucleotide sequence