Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3792

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3791 and GFF3792 overlap by 7 nucleotidesGFF3792 and GFF3793 are separated by 204 nucleotidesGFF3793 and GFF3794 are separated by 2 nucleotides GFF3791 - Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2), at 60,989 to 62,224 GFF3791 GFF3792 - Pyridine nucleotide-disulphide oxidoreductase family protein, at 62,218 to 63,459 GFF3792 GFF3793 - FIG00638799: hypothetical protein, at 63,664 to 63,903 GFF3793 GFF3794 - SanA protein, at 63,906 to 64,625 GFF3794 Position (kb) 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 61.259 kb on - strand, within GFF3791at 61.289 kb on + strand, within GFF3791at 61.318 kb on - strand, within GFF3791at 61.347 kb on - strand, within GFF3791at 61.362 kb on + strand, within GFF3791at 61.370 kb on - strand, within GFF3791at 61.389 kb on - strand, within GFF3791at 61.501 kb on + strand, within GFF3791at 61.604 kb on - strand, within GFF3791at 61.681 kb on + strand, within GFF3791at 61.778 kb on + strand, within GFF3791at 62.186 kb on - strandat 62.665 kb on + strand, within GFF3792at 62.687 kb on - strand, within GFF3792at 63.022 kb on + strand, within GFF3792at 63.199 kb on - strand, within GFF3792at 63.895 kb on + strandat 64.161 kb on - strand, within GFF3794at 64.202 kb on + strand, within GFF3794at 64.339 kb on + strand, within GFF3794at 64.386 kb on - strand, within GFF3794at 64.430 kb on - strand, within GFF3794at 64.459 kb on + strand, within GFF3794

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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61,259 - GFF3791 0.22 +0.7
61,289 + GFF3791 0.24 +0.6
61,318 - GFF3791 0.27 +1.0
61,347 - GFF3791 0.29 -0.0
61,362 + GFF3791 0.30 -1.3
61,370 - GFF3791 0.31 -0.2
61,389 - GFF3791 0.32 -1.0
61,501 + GFF3791 0.41 -1.0
61,604 - GFF3791 0.50 +0.0
61,681 + GFF3791 0.56 -0.2
61,778 + GFF3791 0.64 +0.5
62,186 - -0.3
62,665 + GFF3792 0.36 -0.3
62,687 - GFF3792 0.38 -0.7
63,022 + GFF3792 0.65 -0.3
63,199 - GFF3792 0.79 -0.9
63,895 + +2.7
64,161 - GFF3794 0.35 +0.2
64,202 + GFF3794 0.41 +3.5
64,339 + GFF3794 0.60 +0.9
64,386 - GFF3794 0.67 -1.3
64,430 - GFF3794 0.73 -3.5
64,459 + GFF3794 0.77 -0.7

Or see this region's nucleotide sequence