Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2508

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2506 and GFF2507 are separated by 19 nucleotidesGFF2507 and GFF2508 are separated by 315 nucleotidesGFF2508 and GFF2509 are separated by 46 nucleotides GFF2506 - Multiple antibiotic resistance protein MarA, at 22,711 to 23,094 GFF2506 GFF2507 - Multiple antibiotic resistance protein MarR, at 23,114 to 23,491 GFF2507 GFF2508 - Multiple antibiotic resistance protein MarC, at 23,807 to 24,472 GFF2508 GFF2509 - Sugar efflux transporter SotB, at 24,519 to 25,709 GFF2509 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1 2at 22.844 kb on + strand, within GFF2506at 22.845 kb on - strand, within GFF2506at 22.925 kb on + strand, within GFF2506at 23.064 kb on + strandat 23.064 kb on + strandat 23.065 kb on - strandat 23.065 kb on - strandat 23.065 kb on - strandat 23.071 kb on - strandat 23.116 kb on - strandat 23.116 kb on - strandat 23.139 kb on + strandat 23.180 kb on + strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.659 kb on - strandat 23.793 kb on + strandat 23.800 kb on + strandat 23.803 kb on + strandat 23.803 kb on + strandat 23.806 kb on + strandat 23.940 kb on - strand, within GFF2508at 23.942 kb on - strand, within GFF2508at 23.969 kb on - strand, within GFF2508at 24.181 kb on + strand, within GFF2508at 24.349 kb on + strand, within GFF2508at 24.470 kb on + strandat 24.609 kb on - strandat 24.610 kb on + strandat 24.650 kb on + strand, within GFF2509at 24.650 kb on + strand, within GFF2509at 24.902 kb on + strand, within GFF2509at 25.018 kb on + strand, within GFF2509at 25.018 kb on + strand, within GFF2509at 25.018 kb on + strand, within GFF2509at 25.018 kb on + strand, within GFF2509at 25.022 kb on + strand, within GFF2509at 25.022 kb on + strand, within GFF2509at 25.022 kb on + strand, within GFF2509at 25.023 kb on - strand, within GFF2509at 25.024 kb on + strand, within GFF2509at 25.025 kb on - strand, within GFF2509at 25.067 kb on - strand, within GFF2509at 25.067 kb on - strand, within GFF2509at 25.146 kb on + strand, within GFF2509at 25.165 kb on - strand, within GFF2509at 25.165 kb on - strand, within GFF2509at 25.165 kb on - strand, within GFF2509at 25.172 kb on + strand, within GFF2509at 25.172 kb on + strand, within GFF2509at 25.243 kb on - strand, within GFF2509at 25.293 kb on + strand, within GFF2509at 25.293 kb on + strand, within GFF2509at 25.294 kb on - strand, within GFF2509

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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22,844 + GFF2506 0.35 -0.6
22,845 - GFF2506 0.35 -0.2
22,925 + GFF2506 0.56 -0.5
23,064 + -0.6
23,064 + -0.1
23,065 - -0.7
23,065 - -1.0
23,065 - -0.9
23,071 - -0.9
23,116 - -0.3
23,116 - -0.2
23,139 + -1.1
23,180 + GFF2507 0.17 -1.5
23,387 - GFF2507 0.72 +0.2
23,387 - GFF2507 0.72 -0.3
23,387 - GFF2507 0.72 +1.3
23,387 - GFF2507 0.72 -0.5
23,659 - -0.5
23,793 + -0.0
23,800 + +1.8
23,803 + -0.7
23,803 + +0.4
23,806 + +0.4
23,940 - GFF2508 0.20 +0.3
23,942 - GFF2508 0.20 +1.2
23,969 - GFF2508 0.24 +1.6
24,181 + GFF2508 0.56 -0.0
24,349 + GFF2508 0.81 -0.1
24,470 + -0.1
24,609 - +0.5
24,610 + -0.8
24,650 + GFF2509 0.11 +0.2
24,650 + GFF2509 0.11 -0.4
24,902 + GFF2509 0.32 -0.2
25,018 + GFF2509 0.42 -1.5
25,018 + GFF2509 0.42 -0.2
25,018 + GFF2509 0.42 -1.3
25,018 + GFF2509 0.42 +0.1
25,022 + GFF2509 0.42 -0.8
25,022 + GFF2509 0.42 +1.2
25,022 + GFF2509 0.42 +0.0
25,023 - GFF2509 0.42 -0.6
25,024 + GFF2509 0.42 -0.3
25,025 - GFF2509 0.42 -0.2
25,067 - GFF2509 0.46 -0.6
25,067 - GFF2509 0.46 -1.5
25,146 + GFF2509 0.53 +1.8
25,165 - GFF2509 0.54 -1.6
25,165 - GFF2509 0.54 -0.8
25,165 - GFF2509 0.54 +1.1
25,172 + GFF2509 0.55 -1.2
25,172 + GFF2509 0.55 +0.2
25,243 - GFF2509 0.61 +1.3
25,293 + GFF2509 0.65 -0.7
25,293 + GFF2509 0.65 -0.3
25,294 - GFF2509 0.65 -1.5

Or see this region's nucleotide sequence