Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2288

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2286 and GFF2287 are separated by 10 nucleotidesGFF2287 and GFF2288 are separated by 9 nucleotidesGFF2288 and GFF2289 are separated by 62 nucleotidesGFF2289 and GFF2290 are separated by 97 nucleotides GFF2286 - Melibiose carrier protein, Na+/melibiose symporter, at 74,528 to 75,862 GFF2286 GFF2287 - Fructokinase (EC 2.7.1.4), at 75,873 to 76,832 GFF2287 GFF2288 - ADP-ribosylglycohydrolase (EC 3.2.-.-), at 76,842 to 77,882 GFF2288 GFF2289 - Transcriptional regulator, GntR family, at 77,945 to 78,667 GFF2289 GFF2290 - Putative periplasmic protein, at 78,765 to 78,929 GFF2290 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1at 76.173 kb on + strand, within GFF2287at 76.174 kb on - strand, within GFF2287at 76.174 kb on - strand, within GFF2287at 76.196 kb on + strand, within GFF2287at 76.355 kb on - strand, within GFF2287at 76.424 kb on + strand, within GFF2287at 76.559 kb on + strand, within GFF2287at 76.610 kb on + strand, within GFF2287at 76.610 kb on + strand, within GFF2287at 76.762 kb on + strandat 76.939 kb on + strandat 77.049 kb on + strand, within GFF2288at 77.049 kb on + strand, within GFF2288at 77.049 kb on + strand, within GFF2288at 77.050 kb on - strand, within GFF2288at 77.050 kb on - strand, within GFF2288at 77.139 kb on + strand, within GFF2288at 77.242 kb on + strand, within GFF2288at 77.327 kb on + strand, within GFF2288at 77.478 kb on + strand, within GFF2288at 77.478 kb on + strand, within GFF2288at 77.479 kb on - strand, within GFF2288at 77.479 kb on - strand, within GFF2288at 77.570 kb on - strand, within GFF2288at 77.712 kb on - strand, within GFF2288at 77.714 kb on + strand, within GFF2288at 77.714 kb on + strand, within GFF2288at 77.714 kb on + strand, within GFF2288at 77.741 kb on + strand, within GFF2288at 77.979 kb on - strandat 77.981 kb on - strandat 78.045 kb on + strand, within GFF2289at 78.134 kb on - strand, within GFF2289at 78.191 kb on + strand, within GFF2289at 78.192 kb on - strand, within GFF2289at 78.211 kb on + strand, within GFF2289at 78.330 kb on - strand, within GFF2289at 78.330 kb on - strand, within GFF2289at 78.337 kb on + strand, within GFF2289at 78.337 kb on + strand, within GFF2289at 78.373 kb on + strand, within GFF2289at 78.388 kb on - strand, within GFF2289at 78.389 kb on + strand, within GFF2289at 78.445 kb on + strand, within GFF2289at 78.445 kb on + strand, within GFF2289at 78.446 kb on - strand, within GFF2289at 78.446 kb on - strand, within GFF2289at 78.465 kb on + strand, within GFF2289at 78.554 kb on - strand, within GFF2289at 78.700 kb on + strandat 78.701 kb on - strandat 78.712 kb on - strandat 78.764 kb on + strandat 78.765 kb on - strandat 78.765 kb on - strandat 78.819 kb on - strand, within GFF2290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
remove
76,173 + GFF2287 0.31 -0.5
76,174 - GFF2287 0.31 +0.2
76,174 - GFF2287 0.31 -0.9
76,196 + GFF2287 0.34 -0.8
76,355 - GFF2287 0.50 +0.3
76,424 + GFF2287 0.57 -1.2
76,559 + GFF2287 0.71 +0.2
76,610 + GFF2287 0.77 +0.7
76,610 + GFF2287 0.77 +0.7
76,762 + +1.4
76,939 + -1.3
77,049 + GFF2288 0.20 +0.0
77,049 + GFF2288 0.20 -1.6
77,049 + GFF2288 0.20 +0.9
77,050 - GFF2288 0.20 -0.7
77,050 - GFF2288 0.20 -1.3
77,139 + GFF2288 0.29 -0.5
77,242 + GFF2288 0.38 -0.2
77,327 + GFF2288 0.47 -0.7
77,478 + GFF2288 0.61 -0.2
77,478 + GFF2288 0.61 +0.2
77,479 - GFF2288 0.61 -1.1
77,479 - GFF2288 0.61 +0.2
77,570 - GFF2288 0.70 +0.1
77,712 - GFF2288 0.84 -2.2
77,714 + GFF2288 0.84 +1.1
77,714 + GFF2288 0.84 -0.3
77,714 + GFF2288 0.84 +0.2
77,741 + GFF2288 0.86 -0.2
77,979 - -0.1
77,981 - -0.3
78,045 + GFF2289 0.14 -0.1
78,134 - GFF2289 0.26 -0.7
78,191 + GFF2289 0.34 -0.8
78,192 - GFF2289 0.34 +0.3
78,211 + GFF2289 0.37 +0.8
78,330 - GFF2289 0.53 -0.4
78,330 - GFF2289 0.53 -2.7
78,337 + GFF2289 0.54 -1.3
78,337 + GFF2289 0.54 -0.5
78,373 + GFF2289 0.59 +0.3
78,388 - GFF2289 0.61 -0.0
78,389 + GFF2289 0.61 +1.3
78,445 + GFF2289 0.69 +0.7
78,445 + GFF2289 0.69 +0.8
78,446 - GFF2289 0.69 -0.2
78,446 - GFF2289 0.69 -0.1
78,465 + GFF2289 0.72 -1.4
78,554 - GFF2289 0.84 -0.3
78,700 + -0.8
78,701 - -0.6
78,712 - +0.1
78,764 + -0.7
78,765 - +0.4
78,765 - +1.2
78,819 - GFF2290 0.33 -0.3

Or see this region's nucleotide sequence