Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2262

Experiment: LB_plus_SM_buffer with 8C2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2260 and GFF2261 are separated by 88 nucleotidesGFF2261 and GFF2262 overlap by 4 nucleotidesGFF2262 and GFF2263 are separated by 126 nucleotides GFF2260 - Transcriptional regulator, at 51,783 to 52,331 GFF2260 GFF2261 - L-rhamnose mutarotase, at 52,420 to 52,734 GFF2261 GFF2262 - Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22), at 52,731 to 53,879 GFF2262 GFF2263 - Rhamnulose-1-phosphate aldolase (EC 4.1.2.19), at 54,006 to 54,833 GFF2263 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.782 kb on + strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.888 kb on - strand, within GFF2260at 52.070 kb on - strand, within GFF2260at 52.104 kb on - strand, within GFF2260at 52.107 kb on + strand, within GFF2260at 52.107 kb on + strand, within GFF2260at 52.176 kb on - strand, within GFF2260at 52.178 kb on + strand, within GFF2260at 52.178 kb on + strand, within GFF2260at 52.178 kb on + strand, within GFF2260at 52.274 kb on + strand, within GFF2260at 52.274 kb on + strand, within GFF2260at 52.275 kb on - strand, within GFF2260at 52.422 kb on - strandat 52.430 kb on + strandat 52.444 kb on + strandat 52.485 kb on + strand, within GFF2261at 52.497 kb on + strand, within GFF2261at 52.497 kb on + strand, within GFF2261at 52.498 kb on - strand, within GFF2261at 52.498 kb on - strand, within GFF2261at 52.668 kb on + strand, within GFF2261at 52.705 kb on + strandat 52.734 kb on + strandat 52.735 kb on - strandat 52.787 kb on + strandat 52.898 kb on + strand, within GFF2262at 52.898 kb on + strand, within GFF2262at 52.899 kb on - strand, within GFF2262at 52.944 kb on - strand, within GFF2262at 52.956 kb on + strand, within GFF2262at 53.178 kb on - strand, within GFF2262at 53.217 kb on + strand, within GFF2262at 53.275 kb on + strand, within GFF2262at 53.469 kb on - strand, within GFF2262at 53.469 kb on - strand, within GFF2262at 53.469 kb on - strand, within GFF2262at 53.472 kb on - strand, within GFF2262at 53.475 kb on - strand, within GFF2262at 53.870 kb on + strandat 53.871 kb on - strandat 53.960 kb on + strandat 54.004 kb on + strandat 54.005 kb on - strandat 54.123 kb on + strand, within GFF2263at 54.124 kb on - strand, within GFF2263at 54.147 kb on - strand, within GFF2263at 54.176 kb on + strand, within GFF2263at 54.177 kb on - strand, within GFF2263at 54.379 kb on + strand, within GFF2263at 54.380 kb on - strand, within GFF2263at 54.399 kb on - strand, within GFF2263at 54.417 kb on - strand, within GFF2263at 54.749 kb on + strand, within GFF2263at 54.750 kb on - strand, within GFF2263at 54.822 kb on - strandat 54.849 kb on + strandat 54.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 8C2_phage 15 MOI
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51,782 + -0.7
51,794 + +0.4
51,794 + +1.6
51,794 + -0.9
51,794 + -0.3
51,794 + -1.7
51,888 - GFF2260 0.19 +0.3
52,070 - GFF2260 0.52 +0.8
52,104 - GFF2260 0.58 +0.5
52,107 + GFF2260 0.59 +0.9
52,107 + GFF2260 0.59 +0.4
52,176 - GFF2260 0.72 -0.4
52,178 + GFF2260 0.72 -0.7
52,178 + GFF2260 0.72 +0.3
52,178 + GFF2260 0.72 -0.6
52,274 + GFF2260 0.89 -0.1
52,274 + GFF2260 0.89 +0.7
52,275 - GFF2260 0.90 +0.8
52,422 - -0.1
52,430 + +0.6
52,444 + +1.3
52,485 + GFF2261 0.21 +0.3
52,497 + GFF2261 0.24 -0.9
52,497 + GFF2261 0.24 +0.8
52,498 - GFF2261 0.25 -0.5
52,498 - GFF2261 0.25 +0.5
52,668 + GFF2261 0.79 -1.7
52,705 + +0.3
52,734 + -0.6
52,735 - +0.3
52,787 + +0.3
52,898 + GFF2262 0.15 +0.6
52,898 + GFF2262 0.15 -1.4
52,899 - GFF2262 0.15 -0.5
52,944 - GFF2262 0.19 +1.5
52,956 + GFF2262 0.20 +1.3
53,178 - GFF2262 0.39 +0.6
53,217 + GFF2262 0.42 +1.2
53,275 + GFF2262 0.47 -2.5
53,469 - GFF2262 0.64 -0.0
53,469 - GFF2262 0.64 -0.2
53,469 - GFF2262 0.64 -0.5
53,472 - GFF2262 0.64 +0.1
53,475 - GFF2262 0.65 +0.3
53,870 + +0.2
53,871 - -0.6
53,960 + -1.4
54,004 + +0.6
54,005 - -0.4
54,123 + GFF2263 0.14 -0.4
54,124 - GFF2263 0.14 +0.8
54,147 - GFF2263 0.17 +0.9
54,176 + GFF2263 0.21 -0.0
54,177 - GFF2263 0.21 -0.5
54,379 + GFF2263 0.45 +0.8
54,380 - GFF2263 0.45 +2.0
54,399 - GFF2263 0.47 -0.0
54,417 - GFF2263 0.50 -0.1
54,749 + GFF2263 0.90 +0.7
54,750 - GFF2263 0.90 +0.2
54,822 - +0.2
54,849 + -0.0
54,879 - -1.8

Or see this region's nucleotide sequence