Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18455 and CA264_18460 are separated by 142 nucleotides CA264_18460 and CA264_18465 are separated by 232 nucleotides
CA264_18455: CA264_18455 - ribonuclease D, at 4,292,947 to 4,294,134
_18455
CA264_18460: CA264_18460 - hypothetical protein, at 4,294,277 to 4,294,498
_18460
CA264_18465: CA264_18465 - hypothetical protein, at 4,294,731 to 4,295,507
_18465
Position (kb) 4294
4295 Strain fitness (log2 ratio) -2
-1
0
1 at 4293.396 kb on + strand, within CA264_18455 at 4293.401 kb on + strand, within CA264_18455 at 4293.461 kb on - strand, within CA264_18455 at 4293.477 kb on - strand, within CA264_18455 at 4293.637 kb on - strand, within CA264_18455 at 4293.788 kb on - strand, within CA264_18455 at 4293.833 kb on - strand, within CA264_18455 at 4293.935 kb on - strand, within CA264_18455 at 4293.936 kb on + strand, within CA264_18455 at 4293.936 kb on + strand, within CA264_18455 at 4293.937 kb on - strand, within CA264_18455 at 4293.940 kb on - strand, within CA264_18455 at 4293.941 kb on + strand, within CA264_18455 at 4293.941 kb on + strand, within CA264_18455 at 4293.942 kb on - strand, within CA264_18455 at 4293.942 kb on - strand, within CA264_18455 at 4293.942 kb on - strand, within CA264_18455 at 4293.993 kb on - strand, within CA264_18455 at 4293.996 kb on + strand, within CA264_18455 at 4293.996 kb on + strand, within CA264_18455 at 4293.997 kb on - strand, within CA264_18455 at 4294.126 kb on - strand at 4294.259 kb on + strand at 4294.269 kb on + strand at 4294.304 kb on + strand, within CA264_18460 at 4294.305 kb on - strand, within CA264_18460 at 4294.305 kb on - strand, within CA264_18460 at 4294.316 kb on - strand, within CA264_18460 at 4294.316 kb on - strand, within CA264_18460 at 4294.557 kb on + strand at 4294.558 kb on - strand at 4294.649 kb on - strand at 4294.740 kb on - strand at 4294.741 kb on + strand at 4294.771 kb on + strand at 4294.874 kb on - strand, within CA264_18465 at 4294.974 kb on + strand, within CA264_18465 at 4294.975 kb on - strand, within CA264_18465 at 4295.014 kb on - strand, within CA264_18465 at 4295.014 kb on - strand, within CA264_18465 at 4295.064 kb on + strand, within CA264_18465 at 4295.064 kb on + strand, within CA264_18465 at 4295.065 kb on - strand, within CA264_18465 at 4295.065 kb on - strand, within CA264_18465 at 4295.094 kb on + strand, within CA264_18465 at 4295.096 kb on + strand, within CA264_18465 at 4295.169 kb on + strand, within CA264_18465 at 4295.408 kb on - strand, within CA264_18465 at 4295.427 kb on + strand, within CA264_18465 at 4295.428 kb on - strand, within CA264_18465 at 4295.436 kb on + strand at 4295.470 kb on - strand at 4295.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,293,396 + CA264_18455 0.38 +0.6 4,293,401 + CA264_18455 0.38 +0.4 4,293,461 - CA264_18455 0.43 +0.6 4,293,477 - CA264_18455 0.45 +0.5 4,293,637 - CA264_18455 0.58 -0.1 4,293,788 - CA264_18455 0.71 -0.1 4,293,833 - CA264_18455 0.75 -0.9 4,293,935 - CA264_18455 0.83 +0.2 4,293,936 + CA264_18455 0.83 +0.4 4,293,936 + CA264_18455 0.83 -0.2 4,293,937 - CA264_18455 0.83 -1.2 4,293,940 - CA264_18455 0.84 -0.6 4,293,941 + CA264_18455 0.84 +1.0 4,293,941 + CA264_18455 0.84 +0.4 4,293,942 - CA264_18455 0.84 +0.3 4,293,942 - CA264_18455 0.84 -0.1 4,293,942 - CA264_18455 0.84 +1.5 4,293,993 - CA264_18455 0.88 -1.0 4,293,996 + CA264_18455 0.88 -0.5 4,293,996 + CA264_18455 0.88 -1.1 4,293,997 - CA264_18455 0.88 +1.3 4,294,126 - -0.6 4,294,259 + +1.1 4,294,269 + -0.1 4,294,304 + CA264_18460 0.12 +0.1 4,294,305 - CA264_18460 0.13 -1.0 4,294,305 - CA264_18460 0.13 -1.4 4,294,316 - CA264_18460 0.18 -0.6 4,294,316 - CA264_18460 0.18 +0.7 4,294,557 + +0.2 4,294,558 - +0.4 4,294,649 - -1.9 4,294,740 - -0.6 4,294,741 + -0.4 4,294,771 + -0.6 4,294,874 - CA264_18465 0.18 +0.3 4,294,974 + CA264_18465 0.31 +1.2 4,294,975 - CA264_18465 0.31 -0.2 4,295,014 - CA264_18465 0.36 +0.2 4,295,014 - CA264_18465 0.36 -0.6 4,295,064 + CA264_18465 0.43 +0.1 4,295,064 + CA264_18465 0.43 +1.0 4,295,065 - CA264_18465 0.43 -0.4 4,295,065 - CA264_18465 0.43 +0.2 4,295,094 + CA264_18465 0.47 +0.8 4,295,096 + CA264_18465 0.47 +0.3 4,295,169 + CA264_18465 0.56 +0.4 4,295,408 - CA264_18465 0.87 -0.1 4,295,427 + CA264_18465 0.90 -0.1 4,295,428 - CA264_18465 0.90 -0.3 4,295,436 + -0.6 4,295,470 - -0.8 4,295,470 - -0.3
Or see this region's nucleotide sequence