Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04145 and CA264_04150 are separated by 171 nucleotides CA264_04150 and CA264_04155 are separated by 235 nucleotides CA264_04155 and CA264_04160 are separated by 6 nucleotides CA264_04160 and CA264_04165 are separated by 263 nucleotides
CA264_04145: CA264_04145 - hypothetical protein, at 959,134 to 959,526
_04145
CA264_04150: CA264_04150 - hypothetical protein, at 959,698 to 959,985
_04150
CA264_04155: CA264_04155 - hypothetical protein, at 960,221 to 960,670
_04155
CA264_04160: CA264_04160 - hypothetical protein, at 960,677 to 960,901
_04160
CA264_04165: CA264_04165 - isoaspartyl peptidase/L-asparaginase, at 961,165 to 962,079
_04165
Position (kb) 960
961 Strain fitness (log2 ratio) -2
-1
0
1 at 959.276 kb on + strand, within CA264_04145 at 959.285 kb on + strand, within CA264_04145 at 959.298 kb on - strand, within CA264_04145 at 959.298 kb on - strand, within CA264_04145 at 959.337 kb on - strand, within CA264_04145 at 959.399 kb on - strand, within CA264_04145 at 959.431 kb on + strand, within CA264_04145 at 959.432 kb on - strand, within CA264_04145 at 959.637 kb on + strand at 959.638 kb on - strand at 959.683 kb on + strand at 959.688 kb on - strand at 959.804 kb on + strand, within CA264_04150 at 959.876 kb on + strand, within CA264_04150 at 959.877 kb on - strand, within CA264_04150 at 959.877 kb on - strand, within CA264_04150 at 960.047 kb on + strand at 960.047 kb on + strand at 960.078 kb on - strand at 960.081 kb on - strand at 960.125 kb on + strand at 960.125 kb on + strand at 960.126 kb on - strand at 960.193 kb on + strand at 960.217 kb on - strand at 960.217 kb on - strand at 960.266 kb on + strand, within CA264_04155 at 960.299 kb on + strand, within CA264_04155 at 960.339 kb on + strand, within CA264_04155 at 960.339 kb on + strand, within CA264_04155 at 960.394 kb on + strand, within CA264_04155 at 960.395 kb on - strand, within CA264_04155 at 960.439 kb on + strand, within CA264_04155 at 960.439 kb on + strand, within CA264_04155 at 960.440 kb on - strand, within CA264_04155 at 960.440 kb on - strand, within CA264_04155 at 960.471 kb on - strand, within CA264_04155 at 960.621 kb on - strand, within CA264_04155 at 960.685 kb on - strand at 960.691 kb on - strand at 960.724 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.729 kb on - strand, within CA264_04160 at 960.729 kb on - strand, within CA264_04160 at 960.872 kb on + strand, within CA264_04160 at 960.873 kb on - strand, within CA264_04160 at 960.873 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.911 kb on - strand at 960.912 kb on + strand at 960.913 kb on - strand at 960.918 kb on + strand at 960.918 kb on + strand at 960.928 kb on + strand at 960.928 kb on + strand at 961.040 kb on - strand at 961.166 kb on + strand at 961.167 kb on - strand at 961.170 kb on + strand at 961.171 kb on - strand at 961.221 kb on - strand at 961.283 kb on - strand, within CA264_04165 at 961.283 kb on - strand, within CA264_04165 at 961.380 kb on - strand, within CA264_04165 at 961.381 kb on + strand, within CA264_04165 at 961.445 kb on + strand, within CA264_04165 at 961.461 kb on - strand, within CA264_04165 at 961.504 kb on + strand, within CA264_04165 at 961.505 kb on - strand, within CA264_04165 at 961.611 kb on - strand, within CA264_04165 at 961.630 kb on - strand, within CA264_04165
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 959,276 + CA264_04145 0.36 +0.5 959,285 + CA264_04145 0.38 +0.4 959,298 - CA264_04145 0.42 +0.5 959,298 - CA264_04145 0.42 -0.1 959,337 - CA264_04145 0.52 +1.2 959,399 - CA264_04145 0.67 -0.0 959,431 + CA264_04145 0.76 +0.1 959,432 - CA264_04145 0.76 -0.2 959,637 + -1.0 959,638 - +0.3 959,683 + +0.2 959,688 - -2.0 959,804 + CA264_04150 0.37 +0.9 959,876 + CA264_04150 0.62 -0.4 959,877 - CA264_04150 0.62 +0.1 959,877 - CA264_04150 0.62 -0.3 960,047 + -0.0 960,047 + -0.2 960,078 - -0.1 960,081 - -0.1 960,125 + -0.1 960,125 + -0.2 960,126 - -0.9 960,193 + +0.0 960,217 - -0.7 960,217 - +0.1 960,266 + CA264_04155 0.10 +0.3 960,299 + CA264_04155 0.17 +0.7 960,339 + CA264_04155 0.26 +0.2 960,339 + CA264_04155 0.26 +0.0 960,394 + CA264_04155 0.38 +1.1 960,395 - CA264_04155 0.39 +0.6 960,439 + CA264_04155 0.48 +0.4 960,439 + CA264_04155 0.48 -0.0 960,440 - CA264_04155 0.49 +1.3 960,440 - CA264_04155 0.49 +0.4 960,471 - CA264_04155 0.56 -0.1 960,621 - CA264_04155 0.89 -0.1 960,685 - +0.6 960,691 - -0.3 960,724 + CA264_04160 0.21 +0.1 960,728 + CA264_04160 0.23 -0.4 960,728 + CA264_04160 0.23 -0.5 960,728 + CA264_04160 0.23 -0.2 960,729 - CA264_04160 0.23 +0.9 960,729 - CA264_04160 0.23 -1.4 960,872 + CA264_04160 0.87 -0.0 960,873 - CA264_04160 0.87 -0.7 960,873 - CA264_04160 0.87 -0.1 960,877 - CA264_04160 0.89 -0.1 960,877 - CA264_04160 0.89 -0.7 960,877 - CA264_04160 0.89 -0.1 960,911 - -0.0 960,912 + +0.1 960,913 - -0.2 960,918 + -0.1 960,918 + -0.7 960,928 + +0.8 960,928 + +0.2 961,040 - -0.4 961,166 + +1.2 961,167 - -0.0 961,170 + -0.7 961,171 - +0.1 961,221 - +1.1 961,283 - CA264_04165 0.13 -0.5 961,283 - CA264_04165 0.13 -1.4 961,380 - CA264_04165 0.23 -0.0 961,381 + CA264_04165 0.24 +1.2 961,445 + CA264_04165 0.31 -0.2 961,461 - CA264_04165 0.32 +0.3 961,504 + CA264_04165 0.37 +0.3 961,505 - CA264_04165 0.37 -0.6 961,611 - CA264_04165 0.49 +1.3 961,630 - CA264_04165 0.51 +0.1
Or see this region's nucleotide sequence