Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03360 and CA264_03365 are separated by 196 nucleotides CA264_03365 and CA264_03370 are separated by 10 nucleotides CA264_03370 and CA264_03375 are separated by 149 nucleotides
CA264_03360: CA264_03360 - hypothetical protein, at 787,276 to 788,832
_03360
CA264_03365: CA264_03365 - hypothetical protein, at 789,029 to 789,229
_03365
CA264_03370: CA264_03370 - hypothetical protein, at 789,240 to 789,671
_03370
CA264_03375: CA264_03375 - hypothetical protein, at 789,821 to 790,390
_03375
Position (kb) 789
790 Strain fitness (log2 ratio) -2
-1
0
1 at 788.103 kb on + strand, within CA264_03360 at 788.103 kb on + strand, within CA264_03360 at 788.103 kb on + strand, within CA264_03360 at 788.104 kb on - strand, within CA264_03360 at 788.106 kb on - strand, within CA264_03360 at 788.113 kb on + strand, within CA264_03360 at 788.113 kb on + strand, within CA264_03360 at 788.113 kb on + strand, within CA264_03360 at 788.114 kb on - strand, within CA264_03360 at 788.114 kb on - strand, within CA264_03360 at 788.114 kb on - strand, within CA264_03360 at 788.147 kb on + strand, within CA264_03360 at 788.147 kb on + strand, within CA264_03360 at 788.184 kb on + strand, within CA264_03360 at 788.388 kb on - strand, within CA264_03360 at 788.438 kb on + strand, within CA264_03360 at 788.439 kb on - strand, within CA264_03360 at 788.511 kb on + strand, within CA264_03360 at 788.567 kb on + strand, within CA264_03360 at 788.579 kb on + strand, within CA264_03360 at 788.729 kb on + strand at 788.821 kb on + strand at 788.843 kb on + strand at 788.874 kb on + strand at 788.918 kb on - strand at 788.918 kb on - strand at 788.979 kb on - strand at 788.997 kb on + strand at 789.012 kb on + strand at 789.015 kb on - strand at 789.027 kb on + strand at 789.161 kb on + strand, within CA264_03365 at 789.193 kb on + strand, within CA264_03365 at 789.197 kb on + strand, within CA264_03365 at 789.228 kb on - strand at 789.241 kb on + strand at 789.305 kb on + strand, within CA264_03370 at 789.305 kb on + strand, within CA264_03370 at 789.305 kb on + strand, within CA264_03370 at 789.333 kb on - strand, within CA264_03370 at 789.335 kb on - strand, within CA264_03370 at 789.337 kb on + strand, within CA264_03370 at 789.338 kb on - strand, within CA264_03370 at 789.338 kb on - strand, within CA264_03370 at 789.370 kb on + strand, within CA264_03370 at 789.370 kb on + strand, within CA264_03370 at 789.377 kb on - strand, within CA264_03370 at 789.583 kb on + strand, within CA264_03370 at 789.583 kb on + strand, within CA264_03370 at 789.588 kb on + strand, within CA264_03370 at 789.589 kb on - strand, within CA264_03370 at 789.589 kb on - strand, within CA264_03370 at 789.671 kb on + strand at 789.684 kb on + strand at 789.685 kb on - strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.688 kb on + strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.689 kb on - strand at 789.719 kb on - strand at 789.753 kb on - strand at 789.769 kb on + strand at 789.770 kb on - strand at 789.809 kb on + strand at 789.809 kb on + strand at 789.809 kb on + strand at 789.810 kb on - strand at 789.811 kb on + strand at 789.892 kb on + strand, within CA264_03375 at 789.893 kb on - strand, within CA264_03375 at 789.907 kb on - strand, within CA264_03375 at 789.907 kb on - strand, within CA264_03375 at 789.912 kb on - strand, within CA264_03375 at 789.913 kb on + strand, within CA264_03375 at 789.972 kb on + strand, within CA264_03375 at 789.973 kb on - strand, within CA264_03375 at 789.973 kb on - strand, within CA264_03375 at 789.996 kb on + strand, within CA264_03375 at 789.997 kb on - strand, within CA264_03375 at 790.213 kb on + strand, within CA264_03375 at 790.214 kb on - strand, within CA264_03375
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 788,103 + CA264_03360 0.53 -0.1 788,103 + CA264_03360 0.53 -0.5 788,103 + CA264_03360 0.53 -0.3 788,104 - CA264_03360 0.53 -1.3 788,106 - CA264_03360 0.53 +0.6 788,113 + CA264_03360 0.54 +0.4 788,113 + CA264_03360 0.54 +0.3 788,113 + CA264_03360 0.54 -0.2 788,114 - CA264_03360 0.54 -0.7 788,114 - CA264_03360 0.54 -0.4 788,114 - CA264_03360 0.54 -0.8 788,147 + CA264_03360 0.56 -0.5 788,147 + CA264_03360 0.56 -0.1 788,184 + CA264_03360 0.58 -1.5 788,388 - CA264_03360 0.71 +0.4 788,438 + CA264_03360 0.75 -0.5 788,439 - CA264_03360 0.75 -0.4 788,511 + CA264_03360 0.79 +0.3 788,567 + CA264_03360 0.83 +1.1 788,579 + CA264_03360 0.84 +0.3 788,729 + +0.5 788,821 + +0.4 788,843 + -0.2 788,874 + +1.2 788,918 - -1.0 788,918 - -0.3 788,979 - +0.2 788,997 + +0.7 789,012 + +0.6 789,015 - -0.9 789,027 + -0.3 789,161 + CA264_03365 0.66 -1.1 789,193 + CA264_03365 0.82 -1.8 789,197 + CA264_03365 0.84 +0.1 789,228 - +0.3 789,241 + -0.5 789,305 + CA264_03370 0.15 -0.0 789,305 + CA264_03370 0.15 -0.7 789,305 + CA264_03370 0.15 -0.3 789,333 - CA264_03370 0.22 +0.2 789,335 - CA264_03370 0.22 +0.2 789,337 + CA264_03370 0.22 -0.8 789,338 - CA264_03370 0.23 +0.0 789,338 - CA264_03370 0.23 -0.7 789,370 + CA264_03370 0.30 +1.0 789,370 + CA264_03370 0.30 +0.2 789,377 - CA264_03370 0.32 -1.5 789,583 + CA264_03370 0.79 +0.0 789,583 + CA264_03370 0.79 -0.1 789,588 + CA264_03370 0.81 +0.4 789,589 - CA264_03370 0.81 -0.6 789,589 - CA264_03370 0.81 -0.8 789,671 + -0.3 789,684 + -0.4 789,685 - +0.2 789,688 + +0.3 789,688 + +0.8 789,688 + +0.2 789,688 + -0.4 789,688 + -0.0 789,688 + -0.3 789,689 - +0.3 789,689 - -0.7 789,689 - -0.6 789,689 - +0.0 789,689 - -1.4 789,689 - +0.4 789,689 - +0.5 789,719 - +1.2 789,753 - -0.9 789,769 + -0.1 789,770 - -0.4 789,809 + +0.5 789,809 + -0.1 789,809 + -0.6 789,810 - -0.1 789,811 + -0.3 789,892 + CA264_03375 0.12 -0.5 789,893 - CA264_03375 0.13 -0.7 789,907 - CA264_03375 0.15 -0.2 789,907 - CA264_03375 0.15 +0.1 789,912 - CA264_03375 0.16 -0.7 789,913 + CA264_03375 0.16 -0.3 789,972 + CA264_03375 0.26 +0.8 789,973 - CA264_03375 0.27 -0.1 789,973 - CA264_03375 0.27 +0.7 789,996 + CA264_03375 0.31 -0.1 789,997 - CA264_03375 0.31 -0.3 790,213 + CA264_03375 0.69 -0.4 790,214 - CA264_03375 0.69 +0.4
Or see this region's nucleotide sequence