Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02905 and CA264_02910 are separated by 103 nucleotides CA264_02910 and CA264_02915 are separated by 132 nucleotides CA264_02915 and CA264_02920 are separated by 298 nucleotides
CA264_02905: CA264_02905 - hypothetical protein, at 662,025 to 662,831
_02905
CA264_02910: CA264_02910 - hypothetical protein, at 662,935 to 663,306
_02910
CA264_02915: CA264_02915 - hypothetical protein, at 663,439 to 663,819
_02915
CA264_02920: CA264_02920 - response regulator, at 664,118 to 664,525
_02920
Position (kb) 662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.943 kb on - strand at 661.944 kb on + strand at 661.975 kb on + strand at 662.002 kb on + strand at 662.002 kb on + strand at 662.002 kb on + strand at 662.003 kb on - strand at 662.019 kb on - strand at 662.085 kb on + strand at 662.085 kb on + strand at 662.086 kb on - strand at 662.086 kb on - strand at 662.086 kb on - strand at 662.087 kb on + strand at 662.087 kb on + strand at 662.087 kb on + strand at 662.087 kb on + strand at 662.088 kb on - strand at 662.088 kb on - strand at 662.093 kb on + strand at 662.094 kb on - strand at 662.196 kb on + strand, within CA264_02905 at 662.197 kb on - strand, within CA264_02905 at 662.197 kb on - strand, within CA264_02905 at 662.197 kb on - strand, within CA264_02905 at 662.236 kb on + strand, within CA264_02905 at 662.241 kb on + strand, within CA264_02905 at 662.242 kb on - strand, within CA264_02905 at 662.355 kb on + strand, within CA264_02905 at 662.356 kb on - strand, within CA264_02905 at 662.356 kb on - strand, within CA264_02905 at 662.357 kb on + strand, within CA264_02905 at 662.357 kb on + strand, within CA264_02905 at 662.444 kb on + strand, within CA264_02905 at 662.648 kb on + strand, within CA264_02905 at 662.694 kb on - strand, within CA264_02905 at 662.701 kb on - strand, within CA264_02905 at 662.701 kb on - strand, within CA264_02905 at 662.701 kb on - strand, within CA264_02905 at 662.732 kb on + strand, within CA264_02905 at 662.732 kb on + strand, within CA264_02905 at 662.732 kb on + strand, within CA264_02905 at 662.732 kb on + strand, within CA264_02905 at 662.733 kb on - strand, within CA264_02905 at 662.733 kb on - strand, within CA264_02905 at 662.733 kb on - strand, within CA264_02905 at 662.733 kb on - strand, within CA264_02905 at 662.735 kb on - strand, within CA264_02905 at 662.742 kb on + strand, within CA264_02905 at 662.743 kb on - strand, within CA264_02905 at 662.743 kb on - strand, within CA264_02905 at 662.796 kb on + strand at 662.796 kb on + strand at 662.797 kb on - strand at 662.797 kb on - strand at 662.803 kb on - strand at 662.823 kb on - strand at 662.865 kb on - strand at 662.902 kb on + strand at 662.903 kb on - strand at 662.918 kb on + strand at 662.919 kb on - strand at 662.919 kb on - strand at 662.952 kb on + strand at 662.991 kb on + strand, within CA264_02910 at 662.998 kb on + strand, within CA264_02910 at 662.999 kb on - strand, within CA264_02910 at 663.137 kb on - strand, within CA264_02910 at 663.154 kb on - strand, within CA264_02910 at 663.207 kb on + strand, within CA264_02910 at 663.325 kb on - strand at 663.325 kb on - strand at 663.344 kb on + strand at 663.345 kb on - strand at 663.349 kb on - strand at 663.370 kb on + strand at 663.377 kb on + strand at 663.378 kb on - strand at 663.427 kb on + strand at 663.444 kb on - strand at 663.492 kb on - strand, within CA264_02915 at 663.500 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.548 kb on + strand, within CA264_02915 at 663.602 kb on + strand, within CA264_02915 at 663.603 kb on - strand, within CA264_02915 at 663.660 kb on + strand, within CA264_02915 at 663.665 kb on + strand, within CA264_02915 at 663.798 kb on + strand at 663.798 kb on + strand at 663.798 kb on + strand at 663.825 kb on + strand at 663.825 kb on + strand at 663.826 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.828 kb on - strand at 663.832 kb on + strand at 663.833 kb on - strand at 663.869 kb on + strand at 663.870 kb on - strand at 663.874 kb on - strand at 663.874 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 663.880 kb on - strand at 664.087 kb on + strand at 664.088 kb on - strand at 664.128 kb on + strand at 664.129 kb on - strand at 664.187 kb on + strand, within CA264_02920 at 664.188 kb on - strand, within CA264_02920 at 664.225 kb on + strand, within CA264_02920 at 664.246 kb on + strand, within CA264_02920 at 664.247 kb on - strand, within CA264_02920 at 664.280 kb on + strand, within CA264_02920 at 664.291 kb on - strand, within CA264_02920
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 661,943 - -0.2 661,944 + -0.2 661,975 + -0.1 662,002 + -0.3 662,002 + -1.2 662,002 + +0.5 662,003 - +1.4 662,019 - +0.6 662,085 + -0.2 662,085 + -0.3 662,086 - -1.0 662,086 - -2.2 662,086 - +0.1 662,087 + -1.1 662,087 + +0.5 662,087 + -0.5 662,087 + +0.2 662,088 - +0.6 662,088 - +0.3 662,093 + +0.0 662,094 - +1.0 662,196 + CA264_02905 0.21 +0.4 662,197 - CA264_02905 0.21 +0.1 662,197 - CA264_02905 0.21 -0.4 662,197 - CA264_02905 0.21 -0.3 662,236 + CA264_02905 0.26 -1.0 662,241 + CA264_02905 0.27 +0.2 662,242 - CA264_02905 0.27 -0.3 662,355 + CA264_02905 0.41 -0.5 662,356 - CA264_02905 0.41 -0.4 662,356 - CA264_02905 0.41 +0.1 662,357 + CA264_02905 0.41 -0.1 662,357 + CA264_02905 0.41 -0.8 662,444 + CA264_02905 0.52 -0.7 662,648 + CA264_02905 0.77 +1.2 662,694 - CA264_02905 0.83 -0.2 662,701 - CA264_02905 0.84 -0.1 662,701 - CA264_02905 0.84 -0.1 662,701 - CA264_02905 0.84 +1.5 662,732 + CA264_02905 0.88 +0.1 662,732 + CA264_02905 0.88 -0.8 662,732 + CA264_02905 0.88 -0.4 662,732 + CA264_02905 0.88 -0.1 662,733 - CA264_02905 0.88 +0.8 662,733 - CA264_02905 0.88 +0.9 662,733 - CA264_02905 0.88 +0.0 662,733 - CA264_02905 0.88 -1.0 662,735 - CA264_02905 0.88 +1.9 662,742 + CA264_02905 0.89 +0.2 662,743 - CA264_02905 0.89 +0.3 662,743 - CA264_02905 0.89 -0.1 662,796 + -1.0 662,796 + -0.4 662,797 - -0.3 662,797 - -0.5 662,803 - -1.3 662,823 - +0.2 662,865 - -0.2 662,902 + -1.6 662,903 - +0.1 662,918 + -1.4 662,919 - +0.2 662,919 - +0.2 662,952 + -0.3 662,991 + CA264_02910 0.15 -1.1 662,998 + CA264_02910 0.17 -1.4 662,999 - CA264_02910 0.17 -0.9 663,137 - CA264_02910 0.54 -0.4 663,154 - CA264_02910 0.59 +0.6 663,207 + CA264_02910 0.73 +0.1 663,325 - -2.0 663,325 - +0.2 663,344 + -0.3 663,345 - +0.8 663,349 - -0.5 663,370 + -0.1 663,377 + -0.1 663,378 - -1.0 663,427 + -0.0 663,444 - -0.3 663,492 - CA264_02915 0.14 -0.1 663,500 + CA264_02915 0.16 +1.2 663,548 + CA264_02915 0.29 -1.6 663,548 + CA264_02915 0.29 -0.2 663,548 + CA264_02915 0.29 -0.8 663,602 + CA264_02915 0.43 +0.1 663,603 - CA264_02915 0.43 -0.2 663,660 + CA264_02915 0.58 -0.5 663,665 + CA264_02915 0.59 +0.1 663,798 + -0.3 663,798 + -0.3 663,798 + +0.5 663,825 + -0.6 663,825 + -0.9 663,826 - -0.3 663,828 - -0.2 663,828 - +0.2 663,828 - -0.2 663,828 - +0.6 663,832 + +2.0 663,833 - -0.1 663,869 + -1.0 663,870 - +0.8 663,874 - -0.5 663,874 - -0.7 663,880 - -0.2 663,880 - -0.0 663,880 - +0.3 663,880 - +0.8 664,087 + -0.2 664,088 - -0.3 664,128 + -0.2 664,129 - +0.2 664,187 + CA264_02920 0.17 +1.3 664,188 - CA264_02920 0.17 -0.5 664,225 + CA264_02920 0.26 +0.3 664,246 + CA264_02920 0.31 +0.0 664,247 - CA264_02920 0.32 -3.4 664,280 + CA264_02920 0.40 -0.4 664,291 - CA264_02920 0.42 +2.0
Or see this region's nucleotide sequence