Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02670 and CA264_02675 are separated by 586 nucleotides CA264_02675 and CA264_02680 are separated by 190 nucleotides CA264_02680 and CA264_02685 overlap by 11 nucleotides
CA264_02670: CA264_02670 - hypothetical protein, at 617,509 to 618,273
_02670
CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224
_02675
CA264_02680: CA264_02680 - RNA polymerase subunit sigma-70, at 620,415 to 620,972
_02680
CA264_02685: CA264_02685 - hypothetical protein, at 620,962 to 621,777
_02685
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 617.965 kb on - strand, within CA264_02670 at 618.130 kb on + strand, within CA264_02670 at 618.250 kb on + strand at 618.250 kb on + strand at 618.251 kb on - strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.362 kb on - strand at 618.397 kb on - strand at 618.400 kb on - strand at 618.400 kb on - strand at 618.402 kb on - strand at 618.532 kb on - strand at 618.558 kb on + strand at 618.561 kb on - strand at 618.570 kb on + strand at 618.571 kb on - strand at 618.575 kb on - strand at 618.575 kb on - strand at 618.646 kb on - strand at 618.646 kb on - strand at 618.646 kb on - strand at 618.648 kb on + strand at 618.649 kb on - strand at 618.654 kb on + strand at 618.656 kb on + strand at 618.656 kb on + strand at 618.763 kb on - strand at 618.763 kb on - strand at 618.769 kb on + strand at 618.769 kb on + strand at 618.788 kb on - strand at 618.816 kb on - strand at 618.849 kb on - strand at 618.851 kb on + strand at 618.851 kb on + strand at 618.851 kb on + strand at 618.852 kb on - strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.857 kb on - strand at 618.861 kb on + strand at 618.861 kb on + strand at 618.861 kb on + strand at 618.910 kb on - strand at 619.116 kb on - strand, within CA264_02675 at 619.116 kb on - strand, within CA264_02675 at 619.159 kb on - strand, within CA264_02675 at 619.206 kb on + strand, within CA264_02675 at 619.206 kb on + strand, within CA264_02675 at 619.207 kb on - strand, within CA264_02675 at 619.520 kb on - strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.854 kb on - strand, within CA264_02675 at 619.945 kb on - strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.075 kb on - strand, within CA264_02675 at 620.151 kb on - strand at 620.173 kb on + strand at 620.216 kb on + strand at 620.248 kb on + strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.252 kb on + strand at 620.268 kb on + strand at 620.268 kb on + strand at 620.270 kb on + strand at 620.271 kb on - strand at 620.339 kb on - strand at 620.346 kb on + strand at 620.347 kb on - strand at 620.353 kb on - strand at 620.353 kb on - strand at 620.359 kb on + strand at 620.360 kb on - strand at 620.511 kb on + strand, within CA264_02680 at 620.667 kb on - strand, within CA264_02680 at 620.765 kb on + strand, within CA264_02680 at 620.847 kb on + strand, within CA264_02680 at 620.886 kb on + strand, within CA264_02680 at 620.933 kb on + strand at 620.934 kb on - strand at 620.980 kb on + strand at 620.980 kb on + strand at 620.984 kb on + strand at 621.169 kb on - strand, within CA264_02685 at 621.180 kb on - strand, within CA264_02685
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 617,965 - CA264_02670 0.60 -0.5 618,130 + CA264_02670 0.81 -0.2 618,250 + -0.6 618,250 + -0.1 618,251 - -1.5 618,361 + +0.2 618,361 + +0.4 618,362 - -0.2 618,397 - +0.3 618,400 - -1.2 618,400 - -1.7 618,402 - -0.2 618,532 - +0.2 618,558 + -1.1 618,561 - +0.3 618,570 + -1.0 618,571 - +0.1 618,575 - -0.2 618,575 - -0.1 618,646 - +0.2 618,646 - +0.1 618,646 - +1.1 618,648 + -0.8 618,649 - +0.2 618,654 + -1.0 618,656 + -0.1 618,656 + -1.8 618,763 - +0.2 618,763 - -0.1 618,769 + -0.2 618,769 + +0.0 618,788 - -1.6 618,816 - -0.8 618,849 - +0.0 618,851 + -1.0 618,851 + +0.3 618,851 + -0.7 618,852 - -1.2 618,857 - -1.2 618,857 - -0.6 618,857 - +0.1 618,857 - -0.5 618,861 + -0.2 618,861 + -1.0 618,861 + -1.4 618,910 - -0.4 619,116 - CA264_02675 0.19 +0.0 619,116 - CA264_02675 0.19 +0.8 619,159 - CA264_02675 0.22 -0.4 619,206 + CA264_02675 0.25 -0.4 619,206 + CA264_02675 0.25 -0.5 619,207 - CA264_02675 0.25 -0.1 619,520 - CA264_02675 0.48 +0.0 619,775 + CA264_02675 0.67 -0.5 619,775 + CA264_02675 0.67 -0.6 619,776 - CA264_02675 0.67 -0.1 619,776 - CA264_02675 0.67 -0.9 619,854 - CA264_02675 0.73 -0.0 619,945 - CA264_02675 0.79 -0.2 620,074 + CA264_02675 0.89 -0.8 620,074 + CA264_02675 0.89 -0.7 620,075 - CA264_02675 0.89 +0.1 620,151 - +0.9 620,173 + -0.4 620,216 + -1.0 620,248 + -0.2 620,249 - +0.1 620,249 - -0.3 620,249 - +0.3 620,249 - -1.2 620,249 - +0.0 620,252 + -1.2 620,268 + +0.9 620,268 + -0.2 620,270 + +0.2 620,271 - -0.7 620,339 - -0.8 620,346 + +0.5 620,347 - -0.7 620,353 - +0.4 620,353 - +0.6 620,359 + -0.2 620,360 - -0.8 620,511 + CA264_02680 0.17 -0.6 620,667 - CA264_02680 0.45 +0.1 620,765 + CA264_02680 0.63 -1.1 620,847 + CA264_02680 0.77 -0.1 620,886 + CA264_02680 0.84 +0.2 620,933 + -0.0 620,934 - +1.6 620,980 + -0.1 620,980 + +1.2 620,984 + +0.6 621,169 - CA264_02685 0.25 -0.1 621,180 - CA264_02685 0.27 -0.3
Or see this region's nucleotide sequence