Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01685 and CA264_01690 are separated by 206 nucleotides CA264_01690 and CA264_01695 are separated by 15 nucleotides
CA264_01685: CA264_01685 - glutamate racemase, at 395,611 to 396,426
_01685
CA264_01690: CA264_01690 - hypothetical protein, at 396,633 to 397,178
_01690
CA264_01695: CA264_01695 - glutathionylspermidine synthase, at 397,194 to 398,372
_01695
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1 at 396.435 kb on + strand at 396.435 kb on + strand at 396.436 kb on - strand at 396.453 kb on - strand at 396.473 kb on - strand at 396.494 kb on - strand at 396.521 kb on - strand at 396.538 kb on + strand at 396.542 kb on - strand at 396.576 kb on - strand at 396.583 kb on + strand at 396.584 kb on - strand at 396.608 kb on + strand at 396.680 kb on + strand at 396.820 kb on + strand, within CA264_01690 at 396.863 kb on - strand, within CA264_01690 at 396.863 kb on - strand, within CA264_01690 at 396.871 kb on - strand, within CA264_01690 at 397.006 kb on - strand, within CA264_01690 at 397.008 kb on - strand, within CA264_01690 at 397.020 kb on - strand, within CA264_01690 at 397.042 kb on - strand, within CA264_01690 at 397.042 kb on - strand, within CA264_01690 at 397.044 kb on + strand, within CA264_01690 at 397.044 kb on + strand, within CA264_01690 at 397.070 kb on + strand, within CA264_01690 at 397.094 kb on - strand, within CA264_01690 at 397.101 kb on + strand, within CA264_01690 at 397.176 kb on + strand at 397.189 kb on + strand at 397.189 kb on + strand at 397.190 kb on - strand at 397.240 kb on + strand at 397.241 kb on - strand at 397.299 kb on + strand at 397.516 kb on + strand, within CA264_01695 at 397.516 kb on + strand, within CA264_01695 at 397.571 kb on + strand, within CA264_01695 at 397.571 kb on + strand, within CA264_01695 at 397.571 kb on + strand, within CA264_01695 at 397.572 kb on - strand, within CA264_01695 at 397.572 kb on - strand, within CA264_01695 at 397.572 kb on - strand, within CA264_01695 at 397.573 kb on + strand, within CA264_01695 at 397.573 kb on + strand, within CA264_01695 at 397.718 kb on - strand, within CA264_01695 at 397.725 kb on + strand, within CA264_01695 at 397.725 kb on + strand, within CA264_01695 at 397.725 kb on + strand, within CA264_01695 at 397.754 kb on + strand, within CA264_01695 at 397.766 kb on + strand, within CA264_01695 at 397.768 kb on + strand, within CA264_01695 at 397.768 kb on + strand, within CA264_01695 at 397.769 kb on - strand, within CA264_01695 at 397.825 kb on + strand, within CA264_01695 at 397.826 kb on - strand, within CA264_01695 at 397.870 kb on + strand, within CA264_01695 at 397.870 kb on + strand, within CA264_01695 at 397.870 kb on + strand, within CA264_01695 at 397.870 kb on + strand, within CA264_01695 at 397.875 kb on - strand, within CA264_01695 at 397.907 kb on + strand, within CA264_01695 at 397.908 kb on - strand, within CA264_01695 at 397.994 kb on - strand, within CA264_01695 at 398.010 kb on + strand, within CA264_01695 at 398.011 kb on - strand, within CA264_01695 at 398.012 kb on + strand, within CA264_01695 at 398.012 kb on + strand, within CA264_01695 at 398.061 kb on + strand, within CA264_01695 at 398.068 kb on - strand, within CA264_01695 at 398.115 kb on + strand, within CA264_01695 at 398.116 kb on - strand at 398.131 kb on - strand, within CA264_01695 at 398.131 kb on - strand, within CA264_01695 at 398.131 kb on - strand, within CA264_01695 at 398.161 kb on + strand, within CA264_01695
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 396,435 + +0.9 396,435 + -0.0 396,436 - +1.1 396,453 - +0.3 396,473 - -0.7 396,494 - -0.1 396,521 - +0.0 396,538 + +0.6 396,542 - -0.3 396,576 - +0.4 396,583 + -2.4 396,584 - -0.2 396,608 + +0.2 396,680 + -0.4 396,820 + CA264_01690 0.34 -1.0 396,863 - CA264_01690 0.42 -0.2 396,863 - CA264_01690 0.42 -0.2 396,871 - CA264_01690 0.44 -0.7 397,006 - CA264_01690 0.68 -0.3 397,008 - CA264_01690 0.69 +0.1 397,020 - CA264_01690 0.71 +0.2 397,042 - CA264_01690 0.75 -0.9 397,042 - CA264_01690 0.75 -0.2 397,044 + CA264_01690 0.75 -0.4 397,044 + CA264_01690 0.75 -0.2 397,070 + CA264_01690 0.80 -1.1 397,094 - CA264_01690 0.84 -0.9 397,101 + CA264_01690 0.86 -0.7 397,176 + -1.0 397,189 + -0.5 397,189 + -0.5 397,190 - -0.8 397,240 + -1.1 397,241 - -0.4 397,299 + -0.5 397,516 + CA264_01695 0.27 +0.3 397,516 + CA264_01695 0.27 -0.3 397,571 + CA264_01695 0.32 -0.1 397,571 + CA264_01695 0.32 +0.4 397,571 + CA264_01695 0.32 -0.0 397,572 - CA264_01695 0.32 -1.5 397,572 - CA264_01695 0.32 -1.7 397,572 - CA264_01695 0.32 +0.7 397,573 + CA264_01695 0.32 +0.1 397,573 + CA264_01695 0.32 -0.9 397,718 - CA264_01695 0.44 -0.2 397,725 + CA264_01695 0.45 -0.6 397,725 + CA264_01695 0.45 -0.4 397,725 + CA264_01695 0.45 -2.3 397,754 + CA264_01695 0.47 -0.7 397,766 + CA264_01695 0.49 -0.6 397,768 + CA264_01695 0.49 -0.4 397,768 + CA264_01695 0.49 -0.2 397,769 - CA264_01695 0.49 +0.5 397,825 + CA264_01695 0.54 +0.5 397,826 - CA264_01695 0.54 -0.3 397,870 + CA264_01695 0.57 -0.1 397,870 + CA264_01695 0.57 +0.8 397,870 + CA264_01695 0.57 +0.1 397,870 + CA264_01695 0.57 -0.4 397,875 - CA264_01695 0.58 +0.2 397,907 + CA264_01695 0.60 +0.1 397,908 - CA264_01695 0.61 -0.3 397,994 - CA264_01695 0.68 +0.7 398,010 + CA264_01695 0.69 +0.7 398,011 - CA264_01695 0.69 -0.5 398,012 + CA264_01695 0.69 -0.1 398,012 + CA264_01695 0.69 -0.4 398,061 + CA264_01695 0.74 +0.6 398,068 - CA264_01695 0.74 -0.4 398,115 + CA264_01695 0.78 +0.4 398,116 - +1.3 398,131 - CA264_01695 0.79 +0.2 398,131 - CA264_01695 0.79 +0.9 398,131 - CA264_01695 0.79 +0.1 398,161 + CA264_01695 0.82 +0.2
Or see this region's nucleotide sequence