Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1156

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1155 and B158DRAFT_1156 are separated by 5 nucleotidesB158DRAFT_1156 and B158DRAFT_1157 are separated by 1 nucleotides B158DRAFT_1155: B158DRAFT_1155 - Beta-barrel assembly machine subunit BamB, at 1,191,057 to 1,192,223 _1155 B158DRAFT_1156: B158DRAFT_1156 - ribosome-associated GTPase EngA, at 1,192,229 to 1,193,632 _1156 B158DRAFT_1157: B158DRAFT_1157 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 1,193,634 to 1,194,989 _1157 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -1 0 1at 1193.652 kb on + strandat 1193.661 kb on - strandat 1193.706 kb on - strandat 1193.719 kb on + strandat 1193.719 kb on + strandat 1193.727 kb on - strandat 1193.727 kb on - strandat 1193.727 kb on - strandat 1193.727 kb on - strandat 1193.780 kb on - strand, within B158DRAFT_1157at 1193.887 kb on + strand, within B158DRAFT_1157at 1193.895 kb on - strand, within B158DRAFT_1157at 1193.895 kb on - strand, within B158DRAFT_1157at 1193.903 kb on + strand, within B158DRAFT_1157at 1193.933 kb on - strand, within B158DRAFT_1157at 1193.999 kb on - strand, within B158DRAFT_1157at 1194.020 kb on - strand, within B158DRAFT_1157at 1194.051 kb on - strand, within B158DRAFT_1157at 1194.073 kb on + strand, within B158DRAFT_1157at 1194.075 kb on + strand, within B158DRAFT_1157at 1194.079 kb on + strand, within B158DRAFT_1157at 1194.087 kb on - strand, within B158DRAFT_1157at 1194.087 kb on - strand, within B158DRAFT_1157at 1194.088 kb on - strand, within B158DRAFT_1157at 1194.089 kb on + strand, within B158DRAFT_1157at 1194.116 kb on + strand, within B158DRAFT_1157at 1194.140 kb on + strand, within B158DRAFT_1157at 1194.140 kb on + strand, within B158DRAFT_1157at 1194.148 kb on - strand, within B158DRAFT_1157at 1194.148 kb on - strand, within B158DRAFT_1157at 1194.175 kb on - strand, within B158DRAFT_1157at 1194.199 kb on + strand, within B158DRAFT_1157at 1194.200 kb on + strand, within B158DRAFT_1157at 1194.208 kb on - strand, within B158DRAFT_1157at 1194.208 kb on - strand, within B158DRAFT_1157at 1194.232 kb on + strand, within B158DRAFT_1157at 1194.240 kb on + strand, within B158DRAFT_1157at 1194.248 kb on - strand, within B158DRAFT_1157at 1194.445 kb on - strand, within B158DRAFT_1157at 1194.483 kb on + strand, within B158DRAFT_1157at 1194.483 kb on + strand, within B158DRAFT_1157at 1194.491 kb on - strand, within B158DRAFT_1157at 1194.491 kb on - strand, within B158DRAFT_1157at 1194.491 kb on - strand, within B158DRAFT_1157at 1194.491 kb on - strand, within B158DRAFT_1157at 1194.491 kb on - strand, within B158DRAFT_1157at 1194.491 kb on - strand, within B158DRAFT_1157at 1194.500 kb on - strand, within B158DRAFT_1157at 1194.504 kb on + strand, within B158DRAFT_1157at 1194.504 kb on + strand, within B158DRAFT_1157at 1194.517 kb on - strand, within B158DRAFT_1157at 1194.585 kb on + strand, within B158DRAFT_1157at 1194.592 kb on + strand, within B158DRAFT_1157at 1194.593 kb on - strand, within B158DRAFT_1157at 1194.593 kb on - strand, within B158DRAFT_1157at 1194.598 kb on + strand, within B158DRAFT_1157at 1194.629 kb on - strand, within B158DRAFT_1157

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,193,652 + +0.0
1,193,661 - +0.1
1,193,706 - -0.1
1,193,719 + -0.1
1,193,719 + +0.4
1,193,727 - -0.7
1,193,727 - -0.4
1,193,727 - -0.4
1,193,727 - +0.2
1,193,780 - B158DRAFT_1157 0.11 -0.2
1,193,887 + B158DRAFT_1157 0.19 -0.7
1,193,895 - B158DRAFT_1157 0.19 -0.2
1,193,895 - B158DRAFT_1157 0.19 -0.7
1,193,903 + B158DRAFT_1157 0.20 -0.3
1,193,933 - B158DRAFT_1157 0.22 +0.3
1,193,999 - B158DRAFT_1157 0.27 -0.1
1,194,020 - B158DRAFT_1157 0.28 -1.0
1,194,051 - B158DRAFT_1157 0.31 -0.5
1,194,073 + B158DRAFT_1157 0.32 -0.2
1,194,075 + B158DRAFT_1157 0.33 +0.2
1,194,079 + B158DRAFT_1157 0.33 -0.1
1,194,087 - B158DRAFT_1157 0.33 +0.3
1,194,087 - B158DRAFT_1157 0.33 -0.1
1,194,088 - B158DRAFT_1157 0.33 +0.6
1,194,089 + B158DRAFT_1157 0.34 -0.1
1,194,116 + B158DRAFT_1157 0.36 -0.2
1,194,140 + B158DRAFT_1157 0.37 +0.2
1,194,140 + B158DRAFT_1157 0.37 +0.0
1,194,148 - B158DRAFT_1157 0.38 -0.2
1,194,148 - B158DRAFT_1157 0.38 -1.1
1,194,175 - B158DRAFT_1157 0.40 +0.0
1,194,199 + B158DRAFT_1157 0.42 +0.9
1,194,200 + B158DRAFT_1157 0.42 -0.9
1,194,208 - B158DRAFT_1157 0.42 -0.2
1,194,208 - B158DRAFT_1157 0.42 -1.0
1,194,232 + B158DRAFT_1157 0.44 -0.3
1,194,240 + B158DRAFT_1157 0.45 -0.5
1,194,248 - B158DRAFT_1157 0.45 -0.2
1,194,445 - B158DRAFT_1157 0.60 -0.6
1,194,483 + B158DRAFT_1157 0.63 -0.2
1,194,483 + B158DRAFT_1157 0.63 +0.1
1,194,491 - B158DRAFT_1157 0.63 -0.0
1,194,491 - B158DRAFT_1157 0.63 -0.9
1,194,491 - B158DRAFT_1157 0.63 -1.0
1,194,491 - B158DRAFT_1157 0.63 +0.4
1,194,491 - B158DRAFT_1157 0.63 -0.1
1,194,491 - B158DRAFT_1157 0.63 -0.7
1,194,500 - B158DRAFT_1157 0.64 -0.3
1,194,504 + B158DRAFT_1157 0.64 -0.4
1,194,504 + B158DRAFT_1157 0.64 +0.0
1,194,517 - B158DRAFT_1157 0.65 -0.3
1,194,585 + B158DRAFT_1157 0.70 -0.2
1,194,592 + B158DRAFT_1157 0.71 -0.1
1,194,593 - B158DRAFT_1157 0.71 -0.5
1,194,593 - B158DRAFT_1157 0.71 -0.2
1,194,598 + B158DRAFT_1157 0.71 +0.1
1,194,629 - B158DRAFT_1157 0.73 +1.4

Or see this region's nucleotide sequence