Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0400

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0399 and B158DRAFT_0400 are separated by 87 nucleotidesB158DRAFT_0400 and B158DRAFT_0401 are separated by 85 nucleotidesB158DRAFT_0401 and B158DRAFT_0402 are separated by 213 nucleotides B158DRAFT_0399: B158DRAFT_0399 - LysM domain., at 404,944 to 405,981 _0399 B158DRAFT_0400: B158DRAFT_0400 - DNA protecting protein DprA, at 406,069 to 407,160 _0400 B158DRAFT_0401: B158DRAFT_0401 - Uncharacterized protein conserved in bacteria, at 407,246 to 407,725 _0401 B158DRAFT_0402: B158DRAFT_0402 - Thiol-disulfide isomerase and thioredoxins, at 407,939 to 408,781 _0402 Position (kb) 406 407 408Strain fitness (log2 ratio) -1 0 1at 405.198 kb on + strand, within B158DRAFT_0399at 405.206 kb on - strand, within B158DRAFT_0399at 405.227 kb on + strand, within B158DRAFT_0399at 405.235 kb on - strand, within B158DRAFT_0399at 405.278 kb on + strand, within B158DRAFT_0399at 405.414 kb on + strand, within B158DRAFT_0399at 405.414 kb on + strand, within B158DRAFT_0399at 405.469 kb on + strand, within B158DRAFT_0399at 405.645 kb on + strand, within B158DRAFT_0399at 405.687 kb on + strand, within B158DRAFT_0399at 405.695 kb on - strand, within B158DRAFT_0399at 405.705 kb on - strand, within B158DRAFT_0399at 405.715 kb on - strand, within B158DRAFT_0399at 405.721 kb on + strand, within B158DRAFT_0399at 405.729 kb on - strand, within B158DRAFT_0399at 405.729 kb on - strand, within B158DRAFT_0399at 405.729 kb on - strand, within B158DRAFT_0399at 405.729 kb on - strand, within B158DRAFT_0399at 405.744 kb on + strand, within B158DRAFT_0399at 405.764 kb on + strand, within B158DRAFT_0399at 405.764 kb on + strand, within B158DRAFT_0399at 405.764 kb on + strand, within B158DRAFT_0399at 405.764 kb on + strand, within B158DRAFT_0399at 405.772 kb on - strand, within B158DRAFT_0399at 405.774 kb on + strand, within B158DRAFT_0399at 405.796 kb on - strand, within B158DRAFT_0399at 405.842 kb on - strand, within B158DRAFT_0399at 405.914 kb on + strandat 406.029 kb on + strandat 406.067 kb on + strandat 406.067 kb on + strandat 406.094 kb on + strandat 406.247 kb on + strand, within B158DRAFT_0400at 406.255 kb on - strand, within B158DRAFT_0400at 406.261 kb on - strand, within B158DRAFT_0400at 406.267 kb on + strand, within B158DRAFT_0400at 406.305 kb on - strand, within B158DRAFT_0400at 406.330 kb on + strand, within B158DRAFT_0400at 406.380 kb on + strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.492 kb on - strand, within B158DRAFT_0400at 406.495 kb on + strand, within B158DRAFT_0400at 406.495 kb on + strand, within B158DRAFT_0400at 406.503 kb on - strand, within B158DRAFT_0400at 406.503 kb on - strand, within B158DRAFT_0400at 406.521 kb on - strand, within B158DRAFT_0400at 406.546 kb on + strand, within B158DRAFT_0400at 406.551 kb on + strand, within B158DRAFT_0400at 406.551 kb on + strand, within B158DRAFT_0400at 406.554 kb on - strand, within B158DRAFT_0400at 406.559 kb on - strand, within B158DRAFT_0400at 406.559 kb on - strand, within B158DRAFT_0400at 406.576 kb on - strand, within B158DRAFT_0400at 406.593 kb on + strand, within B158DRAFT_0400at 406.642 kb on + strand, within B158DRAFT_0400at 406.677 kb on - strand, within B158DRAFT_0400at 406.682 kb on - strand, within B158DRAFT_0400at 406.682 kb on - strand, within B158DRAFT_0400at 406.735 kb on - strand, within B158DRAFT_0400at 406.757 kb on - strand, within B158DRAFT_0400at 406.806 kb on + strand, within B158DRAFT_0400at 406.808 kb on + strand, within B158DRAFT_0400at 406.808 kb on + strand, within B158DRAFT_0400at 406.808 kb on + strand, within B158DRAFT_0400at 406.816 kb on - strand, within B158DRAFT_0400at 406.816 kb on - strand, within B158DRAFT_0400at 406.816 kb on - strand, within B158DRAFT_0400at 406.832 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 407.048 kb on + strand, within B158DRAFT_0400at 407.048 kb on + strand, within B158DRAFT_0400at 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.066 kb on - strandat 407.087 kb on + strandat 407.215 kb on + strandat 407.223 kb on - strandat 407.223 kb on - strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.255 kb on + strandat 407.418 kb on + strand, within B158DRAFT_0401at 407.453 kb on + strand, within B158DRAFT_0401at 407.477 kb on + strand, within B158DRAFT_0401at 407.504 kb on + strand, within B158DRAFT_0401at 407.510 kb on + strand, within B158DRAFT_0401at 407.511 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.526 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.712 kb on - strandat 407.742 kb on + strandat 407.745 kb on - strandat 407.755 kb on + strandat 407.755 kb on + strandat 407.755 kb on + strandat 407.755 kb on + strandat 407.763 kb on - strandat 407.763 kb on - strandat 407.777 kb on + strandat 407.777 kb on + strandat 407.785 kb on - strandat 407.786 kb on - strandat 407.859 kb on - strandat 407.859 kb on - strandat 407.895 kb on + strandat 407.957 kb on + strandat 408.012 kb on + strandat 408.012 kb on + strandat 408.106 kb on + strand, within B158DRAFT_0402at 408.106 kb on + strand, within B158DRAFT_0402at 408.119 kb on + strand, within B158DRAFT_0402at 408.119 kb on + strand, within B158DRAFT_0402at 408.119 kb on + strand, within B158DRAFT_0402at 408.127 kb on - strand, within B158DRAFT_0402at 408.127 kb on - strand, within B158DRAFT_0402at 408.127 kb on - strand, within B158DRAFT_0402at 408.132 kb on - strand, within B158DRAFT_0402at 408.132 kb on - strand, within B158DRAFT_0402

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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405,198 + B158DRAFT_0399 0.24 +1.0
405,206 - B158DRAFT_0399 0.25 +0.1
405,227 + B158DRAFT_0399 0.27 -0.2
405,235 - B158DRAFT_0399 0.28 -0.3
405,278 + B158DRAFT_0399 0.32 +0.2
405,414 + B158DRAFT_0399 0.45 +0.7
405,414 + B158DRAFT_0399 0.45 -0.8
405,469 + B158DRAFT_0399 0.51 +0.2
405,645 + B158DRAFT_0399 0.68 +0.0
405,687 + B158DRAFT_0399 0.72 -0.6
405,695 - B158DRAFT_0399 0.72 +0.1
405,705 - B158DRAFT_0399 0.73 -0.2
405,715 - B158DRAFT_0399 0.74 +0.0
405,721 + B158DRAFT_0399 0.75 +0.1
405,729 - B158DRAFT_0399 0.76 +0.1
405,729 - B158DRAFT_0399 0.76 -0.5
405,729 - B158DRAFT_0399 0.76 -0.1
405,729 - B158DRAFT_0399 0.76 -0.3
405,744 + B158DRAFT_0399 0.77 -0.4
405,764 + B158DRAFT_0399 0.79 -0.3
405,764 + B158DRAFT_0399 0.79 -0.1
405,764 + B158DRAFT_0399 0.79 -0.4
405,764 + B158DRAFT_0399 0.79 +0.4
405,772 - B158DRAFT_0399 0.80 +0.1
405,774 + B158DRAFT_0399 0.80 +0.1
405,796 - B158DRAFT_0399 0.82 +0.2
405,842 - B158DRAFT_0399 0.87 -0.0
405,914 + +0.0
406,029 + -0.1
406,067 + +0.2
406,067 + -0.2
406,094 + +0.0
406,247 + B158DRAFT_0400 0.16 -0.1
406,255 - B158DRAFT_0400 0.17 -0.3
406,261 - B158DRAFT_0400 0.18 -0.7
406,267 + B158DRAFT_0400 0.18 -1.1
406,305 - B158DRAFT_0400 0.22 -0.0
406,330 + B158DRAFT_0400 0.24 +0.1
406,380 + B158DRAFT_0400 0.28 +0.0
406,388 - B158DRAFT_0400 0.29 -0.6
406,388 - B158DRAFT_0400 0.29 -0.5
406,388 - B158DRAFT_0400 0.29 -0.0
406,388 - B158DRAFT_0400 0.29 -0.0
406,388 - B158DRAFT_0400 0.29 -0.1
406,492 - B158DRAFT_0400 0.39 -0.5
406,495 + B158DRAFT_0400 0.39 +0.1
406,495 + B158DRAFT_0400 0.39 -0.6
406,503 - B158DRAFT_0400 0.40 -0.4
406,503 - B158DRAFT_0400 0.40 -0.3
406,521 - B158DRAFT_0400 0.41 -0.0
406,546 + B158DRAFT_0400 0.44 +0.0
406,551 + B158DRAFT_0400 0.44 +0.2
406,551 + B158DRAFT_0400 0.44 +0.8
406,554 - B158DRAFT_0400 0.44 -0.4
406,559 - B158DRAFT_0400 0.45 +0.7
406,559 - B158DRAFT_0400 0.45 +0.2
406,576 - B158DRAFT_0400 0.46 -0.0
406,593 + B158DRAFT_0400 0.48 -0.2
406,642 + B158DRAFT_0400 0.52 -0.2
406,677 - B158DRAFT_0400 0.56 -0.0
406,682 - B158DRAFT_0400 0.56 +0.1
406,682 - B158DRAFT_0400 0.56 +0.1
406,735 - B158DRAFT_0400 0.61 +0.0
406,757 - B158DRAFT_0400 0.63 -0.3
406,806 + B158DRAFT_0400 0.67 -0.2
406,808 + B158DRAFT_0400 0.68 +0.8
406,808 + B158DRAFT_0400 0.68 -0.3
406,808 + B158DRAFT_0400 0.68 -0.0
406,816 - B158DRAFT_0400 0.68 -0.3
406,816 - B158DRAFT_0400 0.68 -1.3
406,816 - B158DRAFT_0400 0.68 +0.3
406,832 + B158DRAFT_0400 0.70 +0.1
406,851 + B158DRAFT_0400 0.72 +0.3
406,851 + B158DRAFT_0400 0.72 -0.5
406,851 + B158DRAFT_0400 0.72 +0.2
406,851 + B158DRAFT_0400 0.72 -0.5
406,859 - B158DRAFT_0400 0.72 +0.1
406,859 - B158DRAFT_0400 0.72 +0.6
406,859 - B158DRAFT_0400 0.72 -0.4
406,859 - B158DRAFT_0400 0.72 -0.2
406,859 - B158DRAFT_0400 0.72 +0.4
406,859 - B158DRAFT_0400 0.72 -0.2
406,859 - B158DRAFT_0400 0.72 -0.1
406,859 - B158DRAFT_0400 0.72 +0.2
406,859 - B158DRAFT_0400 0.72 -0.6
406,859 - B158DRAFT_0400 0.72 +0.1
406,859 - B158DRAFT_0400 0.72 -0.3
406,859 - B158DRAFT_0400 0.72 -0.1
406,859 - B158DRAFT_0400 0.72 -0.1
407,048 + B158DRAFT_0400 0.90 -0.0
407,048 + B158DRAFT_0400 0.90 -0.8
407,056 - -0.5
407,056 - -0.0
407,056 - -0.6
407,056 - +0.4
407,056 - -0.1
407,056 - -0.1
407,066 - +0.9
407,087 + -0.1
407,215 + +0.5
407,223 - +0.3
407,223 - -0.1
407,229 + -0.0
407,229 + -0.0
407,229 + +0.0
407,229 + +0.7
407,229 + -0.1
407,229 + -0.0
407,237 - -0.2
407,237 - -0.2
407,237 - -0.2
407,237 - -0.1
407,237 - -0.0
407,237 - -0.3
407,237 - -0.3
407,255 + -0.4
407,418 + B158DRAFT_0401 0.36 +0.2
407,453 + B158DRAFT_0401 0.43 -0.2
407,477 + B158DRAFT_0401 0.48 +0.2
407,504 + B158DRAFT_0401 0.54 -0.1
407,510 + B158DRAFT_0401 0.55 +0.2
407,511 + B158DRAFT_0401 0.55 -0.2
407,523 + B158DRAFT_0401 0.58 -0.6
407,523 + B158DRAFT_0401 0.58 -0.0
407,523 + B158DRAFT_0401 0.58 +0.0
407,523 + B158DRAFT_0401 0.58 +0.0
407,523 + B158DRAFT_0401 0.58 -0.4
407,523 + B158DRAFT_0401 0.58 -0.2
407,523 + B158DRAFT_0401 0.58 +0.1
407,526 - B158DRAFT_0401 0.58 -0.1
407,531 - B158DRAFT_0401 0.59 -0.2
407,531 - B158DRAFT_0401 0.59 +0.2
407,531 - B158DRAFT_0401 0.59 +0.3
407,531 - B158DRAFT_0401 0.59 -0.3
407,531 - B158DRAFT_0401 0.59 -0.4
407,712 - +0.0
407,742 + -0.1
407,745 - +0.1
407,755 + -0.1
407,755 + -0.1
407,755 + -0.3
407,755 + -0.8
407,763 - -0.2
407,763 - +0.3
407,777 + -0.3
407,777 + -0.2
407,785 - -0.5
407,786 - +0.5
407,859 - -0.2
407,859 - -0.0
407,895 + +0.8
407,957 + -0.2
408,012 + -0.9
408,012 + +0.3
408,106 + B158DRAFT_0402 0.20 -0.5
408,106 + B158DRAFT_0402 0.20 +0.0
408,119 + B158DRAFT_0402 0.21 +0.7
408,119 + B158DRAFT_0402 0.21 -0.1
408,119 + B158DRAFT_0402 0.21 -0.3
408,127 - B158DRAFT_0402 0.22 +0.3
408,127 - B158DRAFT_0402 0.22 -0.1
408,127 - B158DRAFT_0402 0.22 +0.1
408,132 - B158DRAFT_0402 0.23 -0.5
408,132 - B158DRAFT_0402 0.23 -0.3

Or see this region's nucleotide sequence