Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4412

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4411 and Echvi_4412 overlap by 4 nucleotidesEchvi_4412 and Echvi_4413 are separated by 11 nucleotides Echvi_4411: Echvi_4411 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 5,274,927 to 5,275,805 _4411 Echvi_4412: Echvi_4412 - hypothetical protein, at 5,275,802 to 5,277,331 _4412 Echvi_4413: Echvi_4413 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 5,277,343 to 5,279,079 _4413 Position (kb) 5275 5276 5277 5278Strain fitness (log2 ratio) -2 -1 0 1 2at 5274.802 kb on + strandat 5274.802 kb on + strandat 5274.802 kb on + strandat 5274.802 kb on + strandat 5274.859 kb on + strandat 5275.061 kb on - strand, within Echvi_4411at 5275.061 kb on - strand, within Echvi_4411at 5275.061 kb on - strand, within Echvi_4411at 5275.193 kb on + strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.288 kb on - strand, within Echvi_4411at 5275.321 kb on - strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.356 kb on + strand, within Echvi_4411at 5275.356 kb on + strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.445 kb on - strand, within Echvi_4411at 5275.465 kb on + strand, within Echvi_4411at 5275.634 kb on + strand, within Echvi_4411at 5275.634 kb on + strand, within Echvi_4411at 5275.635 kb on - strand, within Echvi_4411at 5275.703 kb on + strand, within Echvi_4411at 5275.704 kb on - strand, within Echvi_4411at 5275.704 kb on - strand, within Echvi_4411at 5275.835 kb on - strandat 5275.849 kb on + strandat 5275.884 kb on + strandat 5275.959 kb on + strand, within Echvi_4412at 5275.962 kb on + strand, within Echvi_4412at 5275.962 kb on + strand, within Echvi_4412at 5275.963 kb on - strand, within Echvi_4412at 5275.968 kb on + strand, within Echvi_4412at 5275.969 kb on - strand, within Echvi_4412at 5275.977 kb on - strand, within Echvi_4412at 5276.045 kb on - strand, within Echvi_4412at 5276.053 kb on + strand, within Echvi_4412at 5276.158 kb on - strand, within Echvi_4412at 5276.198 kb on - strand, within Echvi_4412at 5276.205 kb on + strand, within Echvi_4412at 5276.283 kb on - strand, within Echvi_4412at 5276.330 kb on + strand, within Echvi_4412at 5276.451 kb on + strand, within Echvi_4412at 5276.552 kb on + strand, within Echvi_4412at 5276.770 kb on - strand, within Echvi_4412at 5276.849 kb on - strand, within Echvi_4412at 5276.850 kb on + strand, within Echvi_4412at 5276.850 kb on + strand, within Echvi_4412at 5276.882 kb on + strand, within Echvi_4412at 5276.883 kb on - strand, within Echvi_4412at 5276.893 kb on + strand, within Echvi_4412at 5276.893 kb on + strand, within Echvi_4412at 5276.894 kb on - strand, within Echvi_4412at 5276.894 kb on - strand, within Echvi_4412at 5276.895 kb on + strand, within Echvi_4412at 5276.930 kb on + strand, within Echvi_4412at 5276.943 kb on + strand, within Echvi_4412at 5277.032 kb on + strand, within Echvi_4412at 5277.032 kb on + strand, within Echvi_4412at 5277.052 kb on - strand, within Echvi_4412at 5277.058 kb on + strand, within Echvi_4412at 5277.059 kb on - strand, within Echvi_4412at 5277.060 kb on + strand, within Echvi_4412at 5277.061 kb on - strand, within Echvi_4412at 5277.087 kb on - strand, within Echvi_4412at 5277.188 kb on + strandat 5277.233 kb on + strandat 5277.250 kb on - strandat 5277.285 kb on + strandat 5277.286 kb on - strandat 5277.333 kb on + strandat 5277.333 kb on + strandat 5277.333 kb on + strandat 5277.333 kb on + strandat 5277.333 kb on + strandat 5277.333 kb on + strandat 5277.334 kb on - strandat 5277.334 kb on - strandat 5277.334 kb on - strandat 5277.334 kb on - strandat 5277.388 kb on + strandat 5277.434 kb on + strandat 5277.434 kb on + strandat 5277.508 kb on - strandat 5277.563 kb on + strand, within Echvi_4413at 5277.563 kb on + strand, within Echvi_4413at 5277.564 kb on - strand, within Echvi_4413at 5277.621 kb on + strand, within Echvi_4413at 5277.621 kb on + strand, within Echvi_4413at 5277.621 kb on + strand, within Echvi_4413at 5277.621 kb on + strand, within Echvi_4413at 5277.622 kb on - strand, within Echvi_4413at 5277.622 kb on - strand, within Echvi_4413at 5277.749 kb on + strand, within Echvi_4413at 5277.759 kb on + strand, within Echvi_4413at 5277.825 kb on + strand, within Echvi_4413at 5277.825 kb on + strand, within Echvi_4413at 5277.825 kb on + strand, within Echvi_4413at 5277.845 kb on - strand, within Echvi_4413at 5277.860 kb on + strand, within Echvi_4413at 5277.974 kb on + strand, within Echvi_4413at 5277.974 kb on + strand, within Echvi_4413at 5277.974 kb on + strand, within Echvi_4413at 5277.974 kb on + strand, within Echvi_4413at 5277.974 kb on + strand, within Echvi_4413at 5278.040 kb on + strand, within Echvi_4413at 5278.122 kb on + strand, within Echvi_4413at 5278.141 kb on - strand, within Echvi_4413at 5278.223 kb on + strand, within Echvi_4413

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
5,274,802 + -0.1
5,274,802 + -0.9
5,274,802 + -0.3
5,274,802 + -0.6
5,274,859 + +0.2
5,275,061 - Echvi_4411 0.15 -2.6
5,275,061 - Echvi_4411 0.15 -0.3
5,275,061 - Echvi_4411 0.15 +0.6
5,275,193 + Echvi_4411 0.30 -1.9
5,275,194 - Echvi_4411 0.30 -0.6
5,275,194 - Echvi_4411 0.30 -1.7
5,275,194 - Echvi_4411 0.30 -2.0
5,275,194 - Echvi_4411 0.30 -1.7
5,275,288 - Echvi_4411 0.41 -1.4
5,275,321 - Echvi_4411 0.45 +0.0
5,275,352 + Echvi_4411 0.48 -0.6
5,275,352 + Echvi_4411 0.48 -2.4
5,275,352 + Echvi_4411 0.48 -2.2
5,275,352 + Echvi_4411 0.48 +0.0
5,275,356 + Echvi_4411 0.49 -1.9
5,275,356 + Echvi_4411 0.49 -1.4
5,275,357 - Echvi_4411 0.49 -0.1
5,275,357 - Echvi_4411 0.49 +0.3
5,275,357 - Echvi_4411 0.49 -0.3
5,275,357 - Echvi_4411 0.49 -0.1
5,275,357 - Echvi_4411 0.49 +0.6
5,275,445 - Echvi_4411 0.59 -0.6
5,275,465 + Echvi_4411 0.61 -0.2
5,275,634 + Echvi_4411 0.80 -1.6
5,275,634 + Echvi_4411 0.80 +1.5
5,275,635 - Echvi_4411 0.81 +0.5
5,275,703 + Echvi_4411 0.88 +1.3
5,275,704 - Echvi_4411 0.88 -1.9
5,275,704 - Echvi_4411 0.88 +1.6
5,275,835 - +0.0
5,275,849 + +0.8
5,275,884 + -1.7
5,275,959 + Echvi_4412 0.10 +0.4
5,275,962 + Echvi_4412 0.10 -1.4
5,275,962 + Echvi_4412 0.10 -0.3
5,275,963 - Echvi_4412 0.11 +0.1
5,275,968 + Echvi_4412 0.11 +0.4
5,275,969 - Echvi_4412 0.11 +1.8
5,275,977 - Echvi_4412 0.11 -2.0
5,276,045 - Echvi_4412 0.16 +1.8
5,276,053 + Echvi_4412 0.16 +0.4
5,276,158 - Echvi_4412 0.23 -2.3
5,276,198 - Echvi_4412 0.26 +0.4
5,276,205 + Echvi_4412 0.26 +0.8
5,276,283 - Echvi_4412 0.31 -0.9
5,276,330 + Echvi_4412 0.35 -0.2
5,276,451 + Echvi_4412 0.42 -0.6
5,276,552 + Echvi_4412 0.49 +1.0
5,276,770 - Echvi_4412 0.63 +0.3
5,276,849 - Echvi_4412 0.68 -2.0
5,276,850 + Echvi_4412 0.68 -0.1
5,276,850 + Echvi_4412 0.68 -1.3
5,276,882 + Echvi_4412 0.71 -0.2
5,276,883 - Echvi_4412 0.71 +0.6
5,276,893 + Echvi_4412 0.71 +0.2
5,276,893 + Echvi_4412 0.71 +0.2
5,276,894 - Echvi_4412 0.71 -1.2
5,276,894 - Echvi_4412 0.71 -0.8
5,276,895 + Echvi_4412 0.71 +0.9
5,276,930 + Echvi_4412 0.74 -0.1
5,276,943 + Echvi_4412 0.75 -1.2
5,277,032 + Echvi_4412 0.80 -0.9
5,277,032 + Echvi_4412 0.80 +0.1
5,277,052 - Echvi_4412 0.82 -0.2
5,277,058 + Echvi_4412 0.82 -2.6
5,277,059 - Echvi_4412 0.82 +0.4
5,277,060 + Echvi_4412 0.82 +0.4
5,277,061 - Echvi_4412 0.82 -1.0
5,277,087 - Echvi_4412 0.84 -0.6
5,277,188 + -0.2
5,277,233 + -0.3
5,277,250 - -1.8
5,277,285 + -0.3
5,277,286 - +0.1
5,277,333 + -1.5
5,277,333 + +0.0
5,277,333 + +0.1
5,277,333 + -0.2
5,277,333 + +0.1
5,277,333 + -1.2
5,277,334 - +0.5
5,277,334 - -0.4
5,277,334 - -1.4
5,277,334 - +0.2
5,277,388 + +0.8
5,277,434 + +0.4
5,277,434 + +1.0
5,277,508 - -0.3
5,277,563 + Echvi_4413 0.13 -0.2
5,277,563 + Echvi_4413 0.13 -0.9
5,277,564 - Echvi_4413 0.13 -1.5
5,277,621 + Echvi_4413 0.16 -1.1
5,277,621 + Echvi_4413 0.16 +0.3
5,277,621 + Echvi_4413 0.16 +0.8
5,277,621 + Echvi_4413 0.16 +0.8
5,277,622 - Echvi_4413 0.16 +0.3
5,277,622 - Echvi_4413 0.16 -1.2
5,277,749 + Echvi_4413 0.23 +0.7
5,277,759 + Echvi_4413 0.24 +0.6
5,277,825 + Echvi_4413 0.28 -1.9
5,277,825 + Echvi_4413 0.28 -0.9
5,277,825 + Echvi_4413 0.28 -0.7
5,277,845 - Echvi_4413 0.29 +0.2
5,277,860 + Echvi_4413 0.30 -2.2
5,277,974 + Echvi_4413 0.36 -0.5
5,277,974 + Echvi_4413 0.36 +1.0
5,277,974 + Echvi_4413 0.36 -1.7
5,277,974 + Echvi_4413 0.36 -1.0
5,277,974 + Echvi_4413 0.36 -1.7
5,278,040 + Echvi_4413 0.40 +0.5
5,278,122 + Echvi_4413 0.45 +0.1
5,278,141 - Echvi_4413 0.46 -0.1
5,278,223 + Echvi_4413 0.51 +0.6

Or see this region's nucleotide sequence