Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2225

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2222 and Echvi_2223 are separated by 44 nucleotidesEchvi_2223 and Echvi_2224 are separated by 47 nucleotidesEchvi_2224 and Echvi_2225 are separated by 271 nucleotidesEchvi_2225 and Echvi_2226 are separated by 210 nucleotidesEchvi_2226 and Echvi_2227 are separated by 397 nucleotides Echvi_2222: Echvi_2222 - hypothetical protein, at 2,647,296 to 2,647,469 _2222 Echvi_2223: Echvi_2223 - hypothetical protein, at 2,647,514 to 2,647,831 _2223 Echvi_2224: Echvi_2224 - hypothetical protein, at 2,647,879 to 2,648,034 _2224 Echvi_2225: Echvi_2225 - Transposase DDE domain./Transposase domain (DUF772)., at 2,648,306 to 2,649,658 _2225 Echvi_2226: Echvi_2226 - hypothetical protein, at 2,649,869 to 2,650,105 _2226 Echvi_2227: Echvi_2227 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 2,650,503 to 2,652,392 _2227 Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2647.346 kb on - strand, within Echvi_2222at 2647.371 kb on + strand, within Echvi_2222at 2647.371 kb on + strand, within Echvi_2222at 2647.372 kb on - strand, within Echvi_2222at 2647.399 kb on + strand, within Echvi_2222at 2647.486 kb on + strandat 2647.487 kb on - strandat 2647.487 kb on - strandat 2647.489 kb on + strandat 2647.542 kb on - strandat 2647.587 kb on - strand, within Echvi_2223at 2647.592 kb on - strand, within Echvi_2223at 2647.615 kb on + strand, within Echvi_2223at 2647.631 kb on + strand, within Echvi_2223at 2647.631 kb on + strand, within Echvi_2223at 2647.634 kb on - strand, within Echvi_2223at 2647.667 kb on + strand, within Echvi_2223at 2647.667 kb on + strand, within Echvi_2223at 2647.687 kb on + strand, within Echvi_2223at 2647.701 kb on + strand, within Echvi_2223at 2647.701 kb on + strand, within Echvi_2223at 2647.727 kb on + strand, within Echvi_2223at 2647.800 kb on - strandat 2647.815 kb on + strandat 2647.881 kb on - strandat 2647.895 kb on + strand, within Echvi_2224at 2647.896 kb on - strand, within Echvi_2224at 2647.896 kb on - strand, within Echvi_2224at 2647.896 kb on - strand, within Echvi_2224at 2647.896 kb on - strand, within Echvi_2224at 2647.996 kb on + strandat 2648.038 kb on + strandat 2648.064 kb on - strandat 2648.068 kb on - strandat 2648.068 kb on - strandat 2648.068 kb on - strandat 2648.068 kb on - strandat 2648.090 kb on + strandat 2648.099 kb on + strandat 2648.099 kb on + strandat 2648.127 kb on - strandat 2648.950 kb on - strand, within Echvi_2225at 2648.950 kb on - strand, within Echvi_2225at 2649.764 kb on + strandat 2649.764 kb on + strandat 2649.783 kb on + strandat 2649.804 kb on + strandat 2649.809 kb on + strandat 2649.809 kb on + strandat 2649.870 kb on + strandat 2649.874 kb on + strandat 2649.875 kb on - strandat 2649.945 kb on - strand, within Echvi_2226at 2649.948 kb on - strand, within Echvi_2226at 2649.950 kb on + strand, within Echvi_2226at 2649.963 kb on - strand, within Echvi_2226at 2649.963 kb on - strand, within Echvi_2226at 2649.963 kb on - strand, within Echvi_2226at 2649.995 kb on + strand, within Echvi_2226at 2650.018 kb on + strand, within Echvi_2226at 2650.018 kb on + strand, within Echvi_2226at 2650.018 kb on + strand, within Echvi_2226at 2650.019 kb on - strand, within Echvi_2226at 2650.120 kb on - strandat 2650.199 kb on - strandat 2650.292 kb on - strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.317 kb on + strandat 2650.318 kb on - strandat 2650.318 kb on - strandat 2650.319 kb on + strandat 2650.399 kb on + strandat 2650.400 kb on - strandat 2650.453 kb on + strandat 2650.454 kb on - strandat 2650.504 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
2,647,346 - Echvi_2222 0.29 -0.5
2,647,371 + Echvi_2222 0.43 -0.1
2,647,371 + Echvi_2222 0.43 +0.4
2,647,372 - Echvi_2222 0.44 -2.2
2,647,399 + Echvi_2222 0.59 +0.6
2,647,486 + -0.6
2,647,487 - -1.6
2,647,487 - -0.9
2,647,489 + +0.6
2,647,542 - -0.1
2,647,587 - Echvi_2223 0.23 -0.1
2,647,592 - Echvi_2223 0.25 +0.8
2,647,615 + Echvi_2223 0.32 +0.5
2,647,631 + Echvi_2223 0.37 -0.4
2,647,631 + Echvi_2223 0.37 -0.8
2,647,634 - Echvi_2223 0.38 +0.3
2,647,667 + Echvi_2223 0.48 +0.3
2,647,667 + Echvi_2223 0.48 +0.6
2,647,687 + Echvi_2223 0.54 -1.0
2,647,701 + Echvi_2223 0.59 +0.6
2,647,701 + Echvi_2223 0.59 -0.3
2,647,727 + Echvi_2223 0.67 -0.4
2,647,800 - +0.0
2,647,815 + -2.3
2,647,881 - -0.3
2,647,895 + Echvi_2224 0.10 -0.2
2,647,896 - Echvi_2224 0.11 +1.2
2,647,896 - Echvi_2224 0.11 +0.9
2,647,896 - Echvi_2224 0.11 +0.2
2,647,896 - Echvi_2224 0.11 -1.4
2,647,996 + +1.6
2,648,038 + -1.5
2,648,064 - +0.6
2,648,068 - -0.7
2,648,068 - +0.2
2,648,068 - +0.4
2,648,068 - +0.1
2,648,090 + -0.0
2,648,099 + +1.5
2,648,099 + -0.4
2,648,127 - -1.2
2,648,950 - Echvi_2225 0.48 -0.2
2,648,950 - Echvi_2225 0.48 +1.8
2,649,764 + +0.4
2,649,764 + -0.8
2,649,783 + +0.0
2,649,804 + -0.9
2,649,809 + +0.3
2,649,809 + +2.5
2,649,870 + +1.1
2,649,874 + +0.0
2,649,875 - -1.9
2,649,945 - Echvi_2226 0.32 -2.1
2,649,948 - Echvi_2226 0.33 -1.0
2,649,950 + Echvi_2226 0.34 -0.6
2,649,963 - Echvi_2226 0.40 -2.2
2,649,963 - Echvi_2226 0.40 +0.6
2,649,963 - Echvi_2226 0.40 -0.6
2,649,995 + Echvi_2226 0.53 -0.5
2,650,018 + Echvi_2226 0.63 -0.4
2,650,018 + Echvi_2226 0.63 +1.3
2,650,018 + Echvi_2226 0.63 -0.2
2,650,019 - Echvi_2226 0.63 +0.6
2,650,120 - +3.6
2,650,199 - -0.1
2,650,292 - -1.0
2,650,317 + +0.5
2,650,317 + +0.5
2,650,317 + -1.8
2,650,317 + +0.6
2,650,317 + +0.2
2,650,318 - -0.5
2,650,318 - -0.6
2,650,319 + -0.6
2,650,399 + +0.9
2,650,400 - -0.6
2,650,453 + +0.3
2,650,454 - +0.6
2,650,504 + +0.3

Or see this region's nucleotide sequence