Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1747 and Echvi_1748 are separated by 100 nucleotides Echvi_1748 and Echvi_1749 are separated by 490 nucleotides
Echvi_1747: Echvi_1747 - amino acid carrier protein, at 2,056,925 to 2,058,547
_1747
Echvi_1748: Echvi_1748 - hypothetical protein, at 2,058,648 to 2,059,238
_1748
Echvi_1749: Echvi_1749 - AraC-type DNA-binding domain-containing proteins, at 2,059,729 to 2,060,295
_1749
Position (kb)
2058
2059
2060 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9
10 at 2057.669 kb on - strand, within Echvi_1747 at 2057.773 kb on - strand, within Echvi_1747 at 2057.795 kb on + strand, within Echvi_1747 at 2057.832 kb on - strand, within Echvi_1747 at 2057.902 kb on + strand, within Echvi_1747 at 2057.903 kb on - strand, within Echvi_1747 at 2057.903 kb on - strand, within Echvi_1747 at 2057.903 kb on - strand, within Echvi_1747 at 2057.922 kb on + strand, within Echvi_1747 at 2058.064 kb on + strand, within Echvi_1747 at 2058.079 kb on - strand, within Echvi_1747 at 2058.079 kb on - strand, within Echvi_1747 at 2058.094 kb on + strand, within Echvi_1747 at 2058.219 kb on - strand, within Echvi_1747 at 2058.245 kb on + strand, within Echvi_1747 at 2058.246 kb on - strand, within Echvi_1747 at 2058.303 kb on - strand, within Echvi_1747 at 2058.362 kb on + strand, within Echvi_1747 at 2058.364 kb on + strand, within Echvi_1747 at 2058.365 kb on - strand, within Echvi_1747 at 2058.365 kb on - strand, within Echvi_1747 at 2058.403 kb on + strand at 2058.404 kb on - strand at 2058.519 kb on - strand at 2058.531 kb on + strand at 2058.532 kb on - strand at 2058.592 kb on + strand at 2058.608 kb on + strand at 2058.755 kb on + strand, within Echvi_1748 at 2058.755 kb on + strand, within Echvi_1748 at 2058.756 kb on - strand, within Echvi_1748 at 2058.756 kb on - strand, within Echvi_1748 at 2058.760 kb on + strand, within Echvi_1748 at 2058.760 kb on + strand, within Echvi_1748 at 2058.761 kb on - strand, within Echvi_1748 at 2058.774 kb on + strand, within Echvi_1748 at 2058.843 kb on + strand, within Echvi_1748 at 2058.843 kb on + strand, within Echvi_1748 at 2058.844 kb on - strand, within Echvi_1748 at 2058.859 kb on + strand, within Echvi_1748 at 2058.860 kb on - strand, within Echvi_1748 at 2058.864 kb on + strand, within Echvi_1748 at 2058.865 kb on - strand, within Echvi_1748 at 2058.918 kb on + strand, within Echvi_1748 at 2058.919 kb on - strand, within Echvi_1748 at 2058.984 kb on - strand, within Echvi_1748 at 2059.037 kb on + strand, within Echvi_1748 at 2059.037 kb on + strand, within Echvi_1748 at 2059.076 kb on + strand, within Echvi_1748 at 2059.109 kb on + strand, within Echvi_1748 at 2059.111 kb on + strand, within Echvi_1748 at 2059.118 kb on + strand, within Echvi_1748 at 2059.119 kb on - strand, within Echvi_1748 at 2059.138 kb on - strand, within Echvi_1748 at 2059.317 kb on + strand at 2059.317 kb on + strand at 2059.422 kb on - strand at 2059.661 kb on - strand at 2059.661 kb on - strand at 2059.664 kb on - strand at 2059.685 kb on - strand at 2059.839 kb on + strand, within Echvi_1749 at 2059.840 kb on - strand, within Echvi_1749 at 2059.841 kb on + strand, within Echvi_1749 at 2059.916 kb on - strand, within Echvi_1749 at 2059.977 kb on + strand, within Echvi_1749 at 2059.982 kb on + strand, within Echvi_1749 at 2059.982 kb on + strand, within Echvi_1749 at 2060.048 kb on - strand, within Echvi_1749 at 2060.048 kb on - strand, within Echvi_1749 at 2060.107 kb on + strand, within Echvi_1749 at 2060.108 kb on - strand, within Echvi_1749 at 2060.200 kb on + strand, within Echvi_1749 at 2060.201 kb on - strand, within Echvi_1749 at 2060.216 kb on - strand, within Echvi_1749 at 2060.230 kb on + strand, within Echvi_1749 at 2060.235 kb on + strand, within Echvi_1749 at 2060.236 kb on - strand, within Echvi_1749
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,057,669 - Echvi_1747 0.46 +9.7 2,057,773 - Echvi_1747 0.52 +9.4 2,057,795 + Echvi_1747 0.54 +9.2 2,057,832 - Echvi_1747 0.56 +9.5 2,057,902 + Echvi_1747 0.60 +9.3 2,057,903 - Echvi_1747 0.60 +9.1 2,057,903 - Echvi_1747 0.60 +8.8 2,057,903 - Echvi_1747 0.60 +9.1 2,057,922 + Echvi_1747 0.61 +9.8 2,058,064 + Echvi_1747 0.70 +9.0 2,058,079 - Echvi_1747 0.71 +8.2 2,058,079 - Echvi_1747 0.71 +8.7 2,058,094 + Echvi_1747 0.72 -1.2 2,058,219 - Echvi_1747 0.80 +9.7 2,058,245 + Echvi_1747 0.81 +8.6 2,058,246 - Echvi_1747 0.81 +9.0 2,058,303 - Echvi_1747 0.85 +9.0 2,058,362 + Echvi_1747 0.89 +9.0 2,058,364 + Echvi_1747 0.89 +1.9 2,058,365 - Echvi_1747 0.89 +9.4 2,058,365 - Echvi_1747 0.89 +9.0 2,058,403 + +9.2 2,058,404 - +9.3 2,058,519 - +8.7 2,058,531 + +8.5 2,058,532 - +8.8 2,058,592 + -0.1 2,058,608 + +3.2 2,058,755 + Echvi_1748 0.18 +1.3 2,058,755 + Echvi_1748 0.18 +1.7 2,058,756 - Echvi_1748 0.18 +6.9 2,058,756 - Echvi_1748 0.18 +6.1 2,058,760 + Echvi_1748 0.19 +1.3 2,058,760 + Echvi_1748 0.19 +1.4 2,058,761 - Echvi_1748 0.19 +6.8 2,058,774 + Echvi_1748 0.21 +1.1 2,058,843 + Echvi_1748 0.33 +4.0 2,058,843 + Echvi_1748 0.33 +0.9 2,058,844 - Echvi_1748 0.33 +3.5 2,058,859 + Echvi_1748 0.36 -1.2 2,058,860 - Echvi_1748 0.36 +1.5 2,058,864 + Echvi_1748 0.37 +2.1 2,058,865 - Echvi_1748 0.37 +3.9 2,058,918 + Echvi_1748 0.46 +0.3 2,058,919 - Echvi_1748 0.46 +3.2 2,058,984 - Echvi_1748 0.57 +3.0 2,059,037 + Echvi_1748 0.66 +0.6 2,059,037 + Echvi_1748 0.66 +1.5 2,059,076 + Echvi_1748 0.72 -0.1 2,059,109 + Echvi_1748 0.78 +0.3 2,059,111 + Echvi_1748 0.78 +2.4 2,059,118 + Echvi_1748 0.80 +0.6 2,059,119 - Echvi_1748 0.80 +1.3 2,059,138 - Echvi_1748 0.83 +1.9 2,059,317 + +0.8 2,059,317 + +1.2 2,059,422 - +2.3 2,059,661 - +0.3 2,059,661 - +0.2 2,059,664 - +2.6 2,059,685 - +1.7 2,059,839 + Echvi_1749 0.19 -0.4 2,059,840 - Echvi_1749 0.20 +1.6 2,059,841 + Echvi_1749 0.20 +0.7 2,059,916 - Echvi_1749 0.33 -0.5 2,059,977 + Echvi_1749 0.44 -0.8 2,059,982 + Echvi_1749 0.45 +0.8 2,059,982 + Echvi_1749 0.45 +0.0 2,060,048 - Echvi_1749 0.56 +0.6 2,060,048 - Echvi_1749 0.56 +1.2 2,060,107 + Echvi_1749 0.67 -1.0 2,060,108 - Echvi_1749 0.67 -0.3 2,060,200 + Echvi_1749 0.83 -0.1 2,060,201 - Echvi_1749 0.83 +1.3 2,060,216 - Echvi_1749 0.86 +0.3 2,060,230 + Echvi_1749 0.88 -0.8 2,060,235 + Echvi_1749 0.89 +0.9 2,060,236 - Echvi_1749 0.89 +1.2
Or see this region's nucleotide sequence