Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1748

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1747 and Echvi_1748 are separated by 100 nucleotidesEchvi_1748 and Echvi_1749 are separated by 490 nucleotides Echvi_1747: Echvi_1747 - amino acid carrier protein, at 2,056,925 to 2,058,547 _1747 Echvi_1748: Echvi_1748 - hypothetical protein, at 2,058,648 to 2,059,238 _1748 Echvi_1749: Echvi_1749 - AraC-type DNA-binding domain-containing proteins, at 2,059,729 to 2,060,295 _1749 Position (kb) 2058 2059 2060Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10at 2057.669 kb on - strand, within Echvi_1747at 2057.773 kb on - strand, within Echvi_1747at 2057.795 kb on + strand, within Echvi_1747at 2057.832 kb on - strand, within Echvi_1747at 2057.902 kb on + strand, within Echvi_1747at 2057.903 kb on - strand, within Echvi_1747at 2057.903 kb on - strand, within Echvi_1747at 2057.903 kb on - strand, within Echvi_1747at 2057.922 kb on + strand, within Echvi_1747at 2058.064 kb on + strand, within Echvi_1747at 2058.079 kb on - strand, within Echvi_1747at 2058.079 kb on - strand, within Echvi_1747at 2058.094 kb on + strand, within Echvi_1747at 2058.219 kb on - strand, within Echvi_1747at 2058.245 kb on + strand, within Echvi_1747at 2058.246 kb on - strand, within Echvi_1747at 2058.303 kb on - strand, within Echvi_1747at 2058.362 kb on + strand, within Echvi_1747at 2058.364 kb on + strand, within Echvi_1747at 2058.365 kb on - strand, within Echvi_1747at 2058.365 kb on - strand, within Echvi_1747at 2058.403 kb on + strandat 2058.404 kb on - strandat 2058.519 kb on - strandat 2058.531 kb on + strandat 2058.532 kb on - strandat 2058.592 kb on + strandat 2058.608 kb on + strandat 2058.755 kb on + strand, within Echvi_1748at 2058.755 kb on + strand, within Echvi_1748at 2058.756 kb on - strand, within Echvi_1748at 2058.756 kb on - strand, within Echvi_1748at 2058.760 kb on + strand, within Echvi_1748at 2058.760 kb on + strand, within Echvi_1748at 2058.761 kb on - strand, within Echvi_1748at 2058.774 kb on + strand, within Echvi_1748at 2058.843 kb on + strand, within Echvi_1748at 2058.843 kb on + strand, within Echvi_1748at 2058.844 kb on - strand, within Echvi_1748at 2058.859 kb on + strand, within Echvi_1748at 2058.860 kb on - strand, within Echvi_1748at 2058.864 kb on + strand, within Echvi_1748at 2058.865 kb on - strand, within Echvi_1748at 2058.918 kb on + strand, within Echvi_1748at 2058.919 kb on - strand, within Echvi_1748at 2058.984 kb on - strand, within Echvi_1748at 2059.037 kb on + strand, within Echvi_1748at 2059.037 kb on + strand, within Echvi_1748at 2059.076 kb on + strand, within Echvi_1748at 2059.109 kb on + strand, within Echvi_1748at 2059.111 kb on + strand, within Echvi_1748at 2059.118 kb on + strand, within Echvi_1748at 2059.119 kb on - strand, within Echvi_1748at 2059.138 kb on - strand, within Echvi_1748at 2059.317 kb on + strandat 2059.317 kb on + strandat 2059.422 kb on - strandat 2059.661 kb on - strandat 2059.661 kb on - strandat 2059.664 kb on - strandat 2059.685 kb on - strandat 2059.839 kb on + strand, within Echvi_1749at 2059.840 kb on - strand, within Echvi_1749at 2059.841 kb on + strand, within Echvi_1749at 2059.916 kb on - strand, within Echvi_1749at 2059.977 kb on + strand, within Echvi_1749at 2059.982 kb on + strand, within Echvi_1749at 2059.982 kb on + strand, within Echvi_1749at 2060.048 kb on - strand, within Echvi_1749at 2060.048 kb on - strand, within Echvi_1749at 2060.107 kb on + strand, within Echvi_1749at 2060.108 kb on - strand, within Echvi_1749at 2060.200 kb on + strand, within Echvi_1749at 2060.201 kb on - strand, within Echvi_1749at 2060.216 kb on - strand, within Echvi_1749at 2060.230 kb on + strand, within Echvi_1749at 2060.235 kb on + strand, within Echvi_1749at 2060.236 kb on - strand, within Echvi_1749

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,057,669 - Echvi_1747 0.46 +9.7
2,057,773 - Echvi_1747 0.52 +9.4
2,057,795 + Echvi_1747 0.54 +9.2
2,057,832 - Echvi_1747 0.56 +9.5
2,057,902 + Echvi_1747 0.60 +9.3
2,057,903 - Echvi_1747 0.60 +9.1
2,057,903 - Echvi_1747 0.60 +8.8
2,057,903 - Echvi_1747 0.60 +9.1
2,057,922 + Echvi_1747 0.61 +9.8
2,058,064 + Echvi_1747 0.70 +9.0
2,058,079 - Echvi_1747 0.71 +8.2
2,058,079 - Echvi_1747 0.71 +8.7
2,058,094 + Echvi_1747 0.72 -1.2
2,058,219 - Echvi_1747 0.80 +9.7
2,058,245 + Echvi_1747 0.81 +8.6
2,058,246 - Echvi_1747 0.81 +9.0
2,058,303 - Echvi_1747 0.85 +9.0
2,058,362 + Echvi_1747 0.89 +9.0
2,058,364 + Echvi_1747 0.89 +1.9
2,058,365 - Echvi_1747 0.89 +9.4
2,058,365 - Echvi_1747 0.89 +9.0
2,058,403 + +9.2
2,058,404 - +9.3
2,058,519 - +8.7
2,058,531 + +8.5
2,058,532 - +8.8
2,058,592 + -0.1
2,058,608 + +3.2
2,058,755 + Echvi_1748 0.18 +1.3
2,058,755 + Echvi_1748 0.18 +1.7
2,058,756 - Echvi_1748 0.18 +6.9
2,058,756 - Echvi_1748 0.18 +6.1
2,058,760 + Echvi_1748 0.19 +1.3
2,058,760 + Echvi_1748 0.19 +1.4
2,058,761 - Echvi_1748 0.19 +6.8
2,058,774 + Echvi_1748 0.21 +1.1
2,058,843 + Echvi_1748 0.33 +4.0
2,058,843 + Echvi_1748 0.33 +0.9
2,058,844 - Echvi_1748 0.33 +3.5
2,058,859 + Echvi_1748 0.36 -1.2
2,058,860 - Echvi_1748 0.36 +1.5
2,058,864 + Echvi_1748 0.37 +2.1
2,058,865 - Echvi_1748 0.37 +3.9
2,058,918 + Echvi_1748 0.46 +0.3
2,058,919 - Echvi_1748 0.46 +3.2
2,058,984 - Echvi_1748 0.57 +3.0
2,059,037 + Echvi_1748 0.66 +0.6
2,059,037 + Echvi_1748 0.66 +1.5
2,059,076 + Echvi_1748 0.72 -0.1
2,059,109 + Echvi_1748 0.78 +0.3
2,059,111 + Echvi_1748 0.78 +2.4
2,059,118 + Echvi_1748 0.80 +0.6
2,059,119 - Echvi_1748 0.80 +1.3
2,059,138 - Echvi_1748 0.83 +1.9
2,059,317 + +0.8
2,059,317 + +1.2
2,059,422 - +2.3
2,059,661 - +0.3
2,059,661 - +0.2
2,059,664 - +2.6
2,059,685 - +1.7
2,059,839 + Echvi_1749 0.19 -0.4
2,059,840 - Echvi_1749 0.20 +1.6
2,059,841 + Echvi_1749 0.20 +0.7
2,059,916 - Echvi_1749 0.33 -0.5
2,059,977 + Echvi_1749 0.44 -0.8
2,059,982 + Echvi_1749 0.45 +0.8
2,059,982 + Echvi_1749 0.45 +0.0
2,060,048 - Echvi_1749 0.56 +0.6
2,060,048 - Echvi_1749 0.56 +1.2
2,060,107 + Echvi_1749 0.67 -1.0
2,060,108 - Echvi_1749 0.67 -0.3
2,060,200 + Echvi_1749 0.83 -0.1
2,060,201 - Echvi_1749 0.83 +1.3
2,060,216 - Echvi_1749 0.86 +0.3
2,060,230 + Echvi_1749 0.88 -0.8
2,060,235 + Echvi_1749 0.89 +0.9
2,060,236 - Echvi_1749 0.89 +1.2

Or see this region's nucleotide sequence