Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1584

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1583 and Echvi_1584 are separated by 246 nucleotidesEchvi_1584 and Echvi_1585 are separated by 74 nucleotides Echvi_1583: Echvi_1583 - Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,819,590 to 1,822,112 _1583 Echvi_1584: Echvi_1584 - Transcriptional regulators, at 1,822,359 to 1,822,808 _1584 Echvi_1585: Echvi_1585 - Uncharacterized conserved protein, at 1,822,883 to 1,823,410 _1585 Position (kb) 1822 1823Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1821.424 kb on - strand, within Echvi_1583at 1821.443 kb on - strand, within Echvi_1583at 1821.495 kb on + strand, within Echvi_1583at 1821.762 kb on - strand, within Echvi_1583at 1821.810 kb on + strand, within Echvi_1583at 1821.818 kb on + strand, within Echvi_1583at 1821.819 kb on - strand, within Echvi_1583at 1821.832 kb on + strand, within Echvi_1583at 1821.833 kb on - strand, within Echvi_1583at 1821.919 kb on + strandat 1821.919 kb on + strandat 1821.920 kb on - strandat 1821.931 kb on + strandat 1821.956 kb on - strandat 1821.964 kb on + strandat 1821.965 kb on - strandat 1821.965 kb on - strandat 1822.017 kb on + strandat 1822.017 kb on + strandat 1822.017 kb on + strandat 1822.018 kb on - strandat 1822.018 kb on - strandat 1822.018 kb on - strandat 1822.018 kb on - strandat 1822.068 kb on - strandat 1822.070 kb on + strandat 1822.070 kb on + strandat 1822.072 kb on + strandat 1822.073 kb on - strandat 1822.073 kb on - strandat 1822.080 kb on - strandat 1822.100 kb on - strandat 1822.110 kb on + strandat 1822.241 kb on - strandat 1822.394 kb on + strandat 1822.405 kb on - strand, within Echvi_1584at 1822.407 kb on - strand, within Echvi_1584at 1822.429 kb on + strand, within Echvi_1584at 1822.429 kb on + strand, within Echvi_1584at 1822.443 kb on + strand, within Echvi_1584at 1822.444 kb on - strand, within Echvi_1584at 1822.445 kb on + strand, within Echvi_1584at 1822.446 kb on - strand, within Echvi_1584at 1822.500 kb on + strand, within Echvi_1584at 1822.501 kb on - strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.502 kb on + strand, within Echvi_1584at 1822.503 kb on - strand, within Echvi_1584at 1822.503 kb on - strand, within Echvi_1584at 1822.503 kb on - strand, within Echvi_1584at 1822.503 kb on - strand, within Echvi_1584at 1822.549 kb on + strand, within Echvi_1584at 1822.573 kb on + strand, within Echvi_1584at 1822.612 kb on + strand, within Echvi_1584at 1822.634 kb on + strand, within Echvi_1584at 1822.666 kb on + strand, within Echvi_1584at 1822.666 kb on + strand, within Echvi_1584at 1822.667 kb on - strand, within Echvi_1584at 1822.667 kb on - strand, within Echvi_1584at 1822.670 kb on + strand, within Echvi_1584at 1822.670 kb on + strand, within Echvi_1584at 1822.671 kb on - strand, within Echvi_1584at 1822.673 kb on + strand, within Echvi_1584at 1822.674 kb on - strand, within Echvi_1584at 1822.679 kb on + strand, within Echvi_1584at 1822.679 kb on + strand, within Echvi_1584at 1822.772 kb on + strandat 1822.773 kb on - strandat 1822.773 kb on - strandat 1822.773 kb on - strandat 1822.773 kb on - strandat 1822.777 kb on + strandat 1822.798 kb on + strandat 1823.026 kb on + strand, within Echvi_1585at 1823.027 kb on - strand, within Echvi_1585at 1823.027 kb on - strand, within Echvi_1585at 1823.027 kb on - strand, within Echvi_1585at 1823.027 kb on - strand, within Echvi_1585at 1823.158 kb on + strand, within Echvi_1585at 1823.174 kb on + strand, within Echvi_1585at 1823.175 kb on - strand, within Echvi_1585at 1823.270 kb on - strand, within Echvi_1585at 1823.270 kb on - strand, within Echvi_1585at 1823.296 kb on + strand, within Echvi_1585at 1823.296 kb on + strandat 1823.297 kb on - strand, within Echvi_1585at 1823.323 kb on + strand, within Echvi_1585at 1823.372 kb on - strandat 1823.401 kb on + strandat 1823.409 kb on - strandat 1823.421 kb on + strandat 1823.422 kb on - strandat 1823.423 kb on + strandat 1823.424 kb on - strandat 1823.424 kb on - strandat 1823.424 kb on - strandat 1823.424 kb on - strandat 1823.424 kb on - strandat 1823.425 kb on + strandat 1823.425 kb on + strandat 1823.425 kb on + strandat 1823.426 kb on - strandat 1823.426 kb on - strandat 1823.426 kb on - strandat 1823.426 kb on - strandat 1823.436 kb on - strandat 1823.502 kb on - strandat 1823.518 kb on - strandat 1823.576 kb on + strandat 1823.585 kb on + strandat 1823.622 kb on + strandat 1823.774 kb on + strandat 1823.774 kb on + strandat 1823.774 kb on + strandat 1823.774 kb on + strandat 1823.781 kb on + strandat 1823.781 kb on + strandat 1823.794 kb on + strandat 1823.800 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,821,424 - Echvi_1583 0.73 -1.3
1,821,443 - Echvi_1583 0.73 -1.2
1,821,495 + Echvi_1583 0.76 +0.8
1,821,762 - Echvi_1583 0.86 +0.8
1,821,810 + Echvi_1583 0.88 +0.8
1,821,818 + Echvi_1583 0.88 +1.4
1,821,819 - Echvi_1583 0.88 +0.2
1,821,832 + Echvi_1583 0.89 +1.9
1,821,833 - Echvi_1583 0.89 -1.5
1,821,919 + +0.3
1,821,919 + -0.0
1,821,920 - -1.0
1,821,931 + -0.3
1,821,956 - -0.4
1,821,964 + -1.3
1,821,965 - -0.6
1,821,965 - +0.2
1,822,017 + -0.5
1,822,017 + -0.8
1,822,017 + +0.0
1,822,018 - +0.5
1,822,018 - +0.9
1,822,018 - -0.1
1,822,018 - +0.7
1,822,068 - -0.3
1,822,070 + +1.2
1,822,070 + +1.1
1,822,072 + +1.0
1,822,073 - -0.2
1,822,073 - -1.6
1,822,080 - -0.5
1,822,100 - +0.4
1,822,110 + +0.8
1,822,241 - +1.2
1,822,394 + -1.9
1,822,405 - Echvi_1584 0.10 -1.9
1,822,407 - Echvi_1584 0.11 -3.3
1,822,429 + Echvi_1584 0.16 +0.6
1,822,429 + Echvi_1584 0.16 -0.8
1,822,443 + Echvi_1584 0.19 +0.6
1,822,444 - Echvi_1584 0.19 -2.8
1,822,445 + Echvi_1584 0.19 -2.4
1,822,446 - Echvi_1584 0.19 -1.1
1,822,500 + Echvi_1584 0.31 -0.0
1,822,501 - Echvi_1584 0.32 -2.1
1,822,502 + Echvi_1584 0.32 -2.3
1,822,502 + Echvi_1584 0.32 -2.0
1,822,502 + Echvi_1584 0.32 -1.7
1,822,502 + Echvi_1584 0.32 -2.0
1,822,502 + Echvi_1584 0.32 -2.3
1,822,502 + Echvi_1584 0.32 -2.5
1,822,502 + Echvi_1584 0.32 -1.0
1,822,503 - Echvi_1584 0.32 -1.1
1,822,503 - Echvi_1584 0.32 +0.4
1,822,503 - Echvi_1584 0.32 -1.4
1,822,503 - Echvi_1584 0.32 -1.2
1,822,549 + Echvi_1584 0.42 -1.7
1,822,573 + Echvi_1584 0.48 +1.5
1,822,612 + Echvi_1584 0.56 -2.1
1,822,634 + Echvi_1584 0.61 -0.8
1,822,666 + Echvi_1584 0.68 -1.1
1,822,666 + Echvi_1584 0.68 +0.9
1,822,667 - Echvi_1584 0.68 -0.5
1,822,667 - Echvi_1584 0.68 -0.6
1,822,670 + Echvi_1584 0.69 -3.8
1,822,670 + Echvi_1584 0.69 -2.8
1,822,671 - Echvi_1584 0.69 +0.2
1,822,673 + Echvi_1584 0.70 -1.9
1,822,674 - Echvi_1584 0.70 -2.9
1,822,679 + Echvi_1584 0.71 -2.4
1,822,679 + Echvi_1584 0.71 -0.4
1,822,772 + -1.7
1,822,773 - +0.9
1,822,773 - -0.8
1,822,773 - -1.9
1,822,773 - +0.8
1,822,777 + -1.4
1,822,798 + +2.8
1,823,026 + Echvi_1585 0.27 +0.4
1,823,027 - Echvi_1585 0.27 +0.3
1,823,027 - Echvi_1585 0.27 -1.9
1,823,027 - Echvi_1585 0.27 -0.3
1,823,027 - Echvi_1585 0.27 -0.0
1,823,158 + Echvi_1585 0.52 -1.1
1,823,174 + Echvi_1585 0.55 +0.2
1,823,175 - Echvi_1585 0.55 -1.4
1,823,270 - Echvi_1585 0.73 +0.2
1,823,270 - Echvi_1585 0.73 -0.1
1,823,296 + Echvi_1585 0.78 -2.6
1,823,296 + +0.6
1,823,297 - Echvi_1585 0.78 -2.4
1,823,323 + Echvi_1585 0.83 -0.4
1,823,372 - +0.1
1,823,401 + -0.8
1,823,409 - +0.4
1,823,421 + -2.1
1,823,422 - +1.6
1,823,423 + -1.0
1,823,424 - +0.6
1,823,424 - -2.4
1,823,424 - -0.1
1,823,424 - -1.0
1,823,424 - +0.2
1,823,425 + -1.6
1,823,425 + -1.4
1,823,425 + +0.2
1,823,426 - -0.1
1,823,426 - -2.5
1,823,426 - +0.8
1,823,426 - -0.5
1,823,436 - +0.2
1,823,502 - -0.1
1,823,518 - -1.1
1,823,576 + +1.1
1,823,585 + -2.0
1,823,622 + +0.0
1,823,774 + -1.8
1,823,774 + +1.6
1,823,774 + -0.6
1,823,774 + -0.9
1,823,781 + -0.8
1,823,781 + +1.5
1,823,794 + -0.1
1,823,800 + +0.3

Or see this region's nucleotide sequence