Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21365 and CA264_21370 are separated by 330 nucleotides CA264_21370 and CA264_21375 are separated by 94 nucleotides CA264_21375 and CA264_21380 are separated by 11 nucleotides
CA264_21365: CA264_21365 - hypothetical protein, at 137,495 to 137,875
_21365
CA264_21370: CA264_21370 - hypothetical protein, at 138,206 to 139,042
_21370
CA264_21375: CA264_21375 - hypothetical protein, at 139,137 to 139,643
_21375
CA264_21380: CA264_21380 - hypothetical protein, at 139,655 to 140,869
_21380
Position (kb) 138
139
140 Strain fitness (log2 ratio) -2
-1
0
1
2 at 137.207 kb on - strand at 137.222 kb on + strand at 137.223 kb on - strand at 137.264 kb on + strand at 137.264 kb on + strand at 137.279 kb on + strand at 137.302 kb on + strand at 137.303 kb on - strand at 137.306 kb on + strand at 137.307 kb on - strand at 137.307 kb on - strand at 137.311 kb on + strand at 137.311 kb on + strand at 137.314 kb on + strand at 137.333 kb on - strand at 137.333 kb on - strand at 137.371 kb on + strand at 137.372 kb on - strand at 137.381 kb on + strand at 137.382 kb on - strand at 137.382 kb on - strand at 137.411 kb on + strand at 137.419 kb on + strand at 137.428 kb on + strand at 137.428 kb on + strand at 137.429 kb on - strand at 137.431 kb on - strand at 137.431 kb on - strand at 137.432 kb on + strand at 137.432 kb on + strand at 137.433 kb on - strand at 137.433 kb on - strand at 137.453 kb on + strand at 137.453 kb on + strand at 137.457 kb on + strand at 137.458 kb on - strand at 137.478 kb on + strand at 137.478 kb on + strand at 137.479 kb on - strand at 137.479 kb on - strand at 137.480 kb on + strand at 137.481 kb on - strand at 137.491 kb on + strand at 137.491 kb on + strand at 137.491 kb on + strand at 137.492 kb on - strand at 137.563 kb on - strand, within CA264_21365 at 137.563 kb on - strand, within CA264_21365 at 137.581 kb on - strand, within CA264_21365 at 137.594 kb on + strand, within CA264_21365 at 137.594 kb on + strand, within CA264_21365 at 137.595 kb on - strand, within CA264_21365 at 137.698 kb on + strand, within CA264_21365 at 137.741 kb on + strand, within CA264_21365 at 137.744 kb on - strand, within CA264_21365 at 137.744 kb on - strand, within CA264_21365 at 137.801 kb on - strand, within CA264_21365 at 137.801 kb on - strand, within CA264_21365 at 137.801 kb on - strand, within CA264_21365 at 137.866 kb on + strand at 137.866 kb on + strand at 137.867 kb on - strand at 137.886 kb on + strand at 137.887 kb on - strand at 137.887 kb on - strand at 137.901 kb on + strand at 137.902 kb on - strand at 137.908 kb on - strand at 137.915 kb on - strand at 137.932 kb on - strand at 137.932 kb on - strand at 137.958 kb on + strand at 137.983 kb on - strand at 137.983 kb on - strand at 138.055 kb on + strand at 138.055 kb on + strand at 138.057 kb on + strand at 138.132 kb on + strand at 138.133 kb on - strand at 138.200 kb on + strand at 138.201 kb on - strand at 138.201 kb on - strand at 138.201 kb on - strand at 138.220 kb on + strand at 138.237 kb on - strand at 138.268 kb on - strand at 138.273 kb on + strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.311 kb on - strand, within CA264_21370 at 138.349 kb on + strand, within CA264_21370 at 138.350 kb on - strand, within CA264_21370 at 138.351 kb on + strand, within CA264_21370 at 138.355 kb on + strand, within CA264_21370 at 138.356 kb on - strand, within CA264_21370 at 138.396 kb on - strand, within CA264_21370 at 138.410 kb on + strand, within CA264_21370 at 138.410 kb on + strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.411 kb on - strand, within CA264_21370 at 138.412 kb on + strand, within CA264_21370 at 138.505 kb on - strand, within CA264_21370 at 138.602 kb on + strand, within CA264_21370 at 138.604 kb on + strand, within CA264_21370 at 138.604 kb on + strand, within CA264_21370 at 138.607 kb on + strand, within CA264_21370 at 138.644 kb on + strand, within CA264_21370 at 138.698 kb on + strand, within CA264_21370 at 138.704 kb on - strand, within CA264_21370 at 138.716 kb on + strand, within CA264_21370 at 138.757 kb on - strand, within CA264_21370 at 138.815 kb on + strand, within CA264_21370 at 138.815 kb on + strand, within CA264_21370 at 138.816 kb on - strand, within CA264_21370 at 138.903 kb on + strand, within CA264_21370 at 138.915 kb on + strand, within CA264_21370 at 138.935 kb on + strand, within CA264_21370 at 138.935 kb on + strand, within CA264_21370 at 138.935 kb on + strand, within CA264_21370 at 138.936 kb on - strand, within CA264_21370 at 138.936 kb on - strand, within CA264_21370 at 138.938 kb on - strand, within CA264_21370 at 138.939 kb on + strand, within CA264_21370 at 138.939 kb on + strand, within CA264_21370 at 138.940 kb on - strand, within CA264_21370 at 138.940 kb on - strand, within CA264_21370 at 138.940 kb on - strand, within CA264_21370 at 138.940 kb on - strand, within CA264_21370 at 138.940 kb on - strand, within CA264_21370 at 138.940 kb on - strand, within CA264_21370 at 138.960 kb on - strand at 138.981 kb on + strand at 139.041 kb on - strand at 139.065 kb on - strand at 139.099 kb on - strand at 139.104 kb on - strand at 139.125 kb on + strand at 139.126 kb on - strand at 139.126 kb on - strand at 139.151 kb on + strand at 139.152 kb on - strand at 139.152 kb on - strand at 139.171 kb on + strand at 139.171 kb on + strand at 139.210 kb on - strand, within CA264_21375 at 139.215 kb on + strand, within CA264_21375 at 139.215 kb on + strand, within CA264_21375 at 139.216 kb on - strand, within CA264_21375 at 139.216 kb on - strand, within CA264_21375 at 139.236 kb on - strand, within CA264_21375 at 139.240 kb on - strand, within CA264_21375 at 139.285 kb on + strand, within CA264_21375 at 139.288 kb on + strand, within CA264_21375 at 139.288 kb on + strand, within CA264_21375 at 139.335 kb on + strand, within CA264_21375 at 139.336 kb on - strand, within CA264_21375 at 139.338 kb on - strand, within CA264_21375 at 139.338 kb on - strand, within CA264_21375 at 139.357 kb on - strand, within CA264_21375 at 139.384 kb on + strand, within CA264_21375 at 139.385 kb on - strand, within CA264_21375 at 139.393 kb on - strand, within CA264_21375 at 139.424 kb on + strand, within CA264_21375 at 139.448 kb on + strand, within CA264_21375 at 139.449 kb on - strand, within CA264_21375 at 139.484 kb on + strand, within CA264_21375 at 139.500 kb on + strand, within CA264_21375 at 139.501 kb on - strand, within CA264_21375 at 139.501 kb on - strand, within CA264_21375 at 139.501 kb on - strand, within CA264_21375 at 139.576 kb on - strand, within CA264_21375 at 139.635 kb on - strand at 139.818 kb on + strand, within CA264_21380 at 139.820 kb on + strand, within CA264_21380 at 139.822 kb on + strand, within CA264_21380 at 139.880 kb on + strand, within CA264_21380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 137,207 - -1.6 137,222 + +0.1 137,223 - -0.9 137,264 + -1.1 137,264 + -0.2 137,279 + +0.1 137,302 + -0.2 137,303 - -0.8 137,306 + +0.7 137,307 - +0.0 137,307 - -0.9 137,311 + +0.1 137,311 + +0.2 137,314 + +0.6 137,333 - +1.9 137,333 - +0.1 137,371 + -0.6 137,372 - -0.6 137,381 + -0.9 137,382 - -0.6 137,382 - +0.1 137,411 + -0.1 137,419 + +0.1 137,428 + -0.2 137,428 + -0.1 137,429 - -0.2 137,431 - -0.1 137,431 - -0.1 137,432 + -0.4 137,432 + +0.4 137,433 - -1.1 137,433 - +1.4 137,453 + -0.9 137,453 + +1.4 137,457 + +0.2 137,458 - -0.1 137,478 + -0.3 137,478 + +0.4 137,479 - -1.1 137,479 - -1.1 137,480 + -0.1 137,481 - +0.2 137,491 + -0.1 137,491 + -0.1 137,491 + +1.2 137,492 - -0.1 137,563 - CA264_21365 0.18 -0.5 137,563 - CA264_21365 0.18 +0.1 137,581 - CA264_21365 0.23 -0.4 137,594 + CA264_21365 0.26 -0.1 137,594 + CA264_21365 0.26 -2.0 137,595 - CA264_21365 0.26 -0.8 137,698 + CA264_21365 0.53 +0.1 137,741 + CA264_21365 0.65 -0.5 137,744 - CA264_21365 0.65 -0.7 137,744 - CA264_21365 0.65 +0.8 137,801 - CA264_21365 0.80 -0.1 137,801 - CA264_21365 0.80 +0.4 137,801 - CA264_21365 0.80 +0.4 137,866 + -0.5 137,866 + +0.7 137,867 - +0.9 137,886 + -0.1 137,887 - -0.1 137,887 - -0.0 137,901 + -0.7 137,902 - +0.2 137,908 - -0.4 137,915 - -0.7 137,932 - -0.3 137,932 - +0.9 137,958 + +0.0 137,983 - +2.0 137,983 - -0.2 138,055 + +0.4 138,055 + -1.9 138,057 + -0.4 138,132 + -0.1 138,133 - +0.4 138,200 + -0.6 138,201 - +0.4 138,201 - -0.0 138,201 - +0.2 138,220 + -0.2 138,237 - +0.0 138,268 - -0.7 138,273 + -0.0 138,281 - +0.0 138,281 - -1.0 138,311 - CA264_21370 0.13 +0.3 138,349 + CA264_21370 0.17 +0.3 138,350 - CA264_21370 0.17 +0.1 138,351 + CA264_21370 0.17 +1.0 138,355 + CA264_21370 0.18 -0.3 138,356 - CA264_21370 0.18 -0.0 138,396 - CA264_21370 0.23 -1.0 138,410 + CA264_21370 0.24 -0.0 138,410 + CA264_21370 0.24 -0.1 138,411 - CA264_21370 0.24 +1.1 138,411 - CA264_21370 0.24 -0.0 138,411 - CA264_21370 0.24 +0.9 138,411 - CA264_21370 0.24 +1.0 138,412 + CA264_21370 0.25 +0.7 138,505 - CA264_21370 0.36 +0.9 138,602 + CA264_21370 0.47 -0.6 138,604 + CA264_21370 0.48 +0.2 138,604 + CA264_21370 0.48 -1.0 138,607 + CA264_21370 0.48 +0.3 138,644 + CA264_21370 0.52 -0.6 138,698 + CA264_21370 0.59 -0.1 138,704 - CA264_21370 0.59 +0.3 138,716 + CA264_21370 0.61 +0.4 138,757 - CA264_21370 0.66 +0.9 138,815 + CA264_21370 0.73 -0.1 138,815 + CA264_21370 0.73 +0.2 138,816 - CA264_21370 0.73 +0.2 138,903 + CA264_21370 0.83 -0.3 138,915 + CA264_21370 0.85 -0.1 138,935 + CA264_21370 0.87 +0.3 138,935 + CA264_21370 0.87 -0.1 138,935 + CA264_21370 0.87 +0.0 138,936 - CA264_21370 0.87 -0.7 138,936 - CA264_21370 0.87 -0.4 138,938 - CA264_21370 0.87 +2.4 138,939 + CA264_21370 0.88 -0.1 138,939 + CA264_21370 0.88 -0.3 138,940 - CA264_21370 0.88 -0.4 138,940 - CA264_21370 0.88 -0.2 138,940 - CA264_21370 0.88 -0.2 138,940 - CA264_21370 0.88 -0.7 138,940 - CA264_21370 0.88 -0.5 138,940 - CA264_21370 0.88 +2.0 138,960 - -0.1 138,981 + +0.2 139,041 - +0.3 139,065 - -0.4 139,099 - -0.7 139,104 - -0.4 139,125 + +0.1 139,126 - +0.3 139,126 - +1.1 139,151 + +0.1 139,152 - +1.0 139,152 - +0.2 139,171 + +0.9 139,171 + +0.2 139,210 - CA264_21375 0.14 -0.1 139,215 + CA264_21375 0.15 -0.4 139,215 + CA264_21375 0.15 -0.3 139,216 - CA264_21375 0.16 -1.5 139,216 - CA264_21375 0.16 -0.9 139,236 - CA264_21375 0.20 -0.5 139,240 - CA264_21375 0.20 -0.1 139,285 + CA264_21375 0.29 -1.8 139,288 + CA264_21375 0.30 -0.2 139,288 + CA264_21375 0.30 -0.1 139,335 + CA264_21375 0.39 -1.3 139,336 - CA264_21375 0.39 -1.0 139,338 - CA264_21375 0.40 -0.4 139,338 - CA264_21375 0.40 -0.2 139,357 - CA264_21375 0.43 +0.0 139,384 + CA264_21375 0.49 -0.7 139,385 - CA264_21375 0.49 -0.2 139,393 - CA264_21375 0.50 +0.9 139,424 + CA264_21375 0.57 +0.2 139,448 + CA264_21375 0.61 +1.7 139,449 - CA264_21375 0.62 -0.1 139,484 + CA264_21375 0.68 +0.2 139,500 + CA264_21375 0.72 +0.4 139,501 - CA264_21375 0.72 +0.1 139,501 - CA264_21375 0.72 +0.2 139,501 - CA264_21375 0.72 -0.4 139,576 - CA264_21375 0.87 -0.5 139,635 - +0.7 139,818 + CA264_21380 0.13 -0.5 139,820 + CA264_21380 0.14 -0.1 139,822 + CA264_21380 0.14 -0.5 139,880 + CA264_21380 0.19 +1.2
Or see this region's nucleotide sequence