Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19680 and CA264_19685 are separated by 3 nucleotides CA264_19685 and CA264_19690 are separated by 247 nucleotides
CA264_19680: CA264_19680 - two-component sensor histidine kinase, at 4,543,558 to 4,544,598
_19680
CA264_19685: CA264_19685 - DNA-binding response regulator, at 4,544,602 to 4,545,291
_19685
CA264_19690: CA264_19690 - ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member, at 4,545,539 to 4,546,348
_19690
Position (kb)
4544
4545
4546 Strain fitness (log2 ratio)
-2
-1
0
1 at 4543.940 kb on - strand, within CA264_19680 at 4544.247 kb on + strand, within CA264_19680 at 4544.248 kb on - strand, within CA264_19680 at 4544.367 kb on + strand, within CA264_19680 at 4544.402 kb on + strand, within CA264_19680 at 4544.403 kb on - strand, within CA264_19680 at 4544.404 kb on + strand, within CA264_19680 at 4544.449 kb on + strand, within CA264_19680 at 4544.580 kb on + strand at 4544.581 kb on - strand at 4544.600 kb on + strand at 4544.601 kb on - strand at 4544.601 kb on - strand at 4544.621 kb on + strand at 4544.884 kb on + strand, within CA264_19685 at 4545.200 kb on + strand, within CA264_19685 at 4545.227 kb on - strand at 4545.259 kb on + strand at 4545.273 kb on - strand at 4545.326 kb on + strand at 4545.359 kb on + strand at 4545.384 kb on + strand at 4545.392 kb on - strand at 4545.421 kb on + strand at 4545.424 kb on + strand at 4545.426 kb on + strand at 4545.426 kb on + strand at 4545.426 kb on + strand at 4545.426 kb on + strand at 4545.427 kb on - strand at 4545.427 kb on - strand at 4545.431 kb on + strand at 4545.477 kb on + strand at 4545.478 kb on - strand at 4545.577 kb on + strand at 4545.578 kb on - strand at 4545.807 kb on - strand, within CA264_19690 at 4545.848 kb on - strand, within CA264_19690 at 4545.852 kb on + strand, within CA264_19690 at 4545.909 kb on - strand, within CA264_19690 at 4545.909 kb on - strand, within CA264_19690 at 4545.957 kb on - strand, within CA264_19690 at 4545.957 kb on - strand, within CA264_19690 at 4545.976 kb on - strand, within CA264_19690 at 4546.008 kb on + strand, within CA264_19690 at 4546.008 kb on + strand, within CA264_19690 at 4546.022 kb on + strand, within CA264_19690 at 4546.023 kb on - strand, within CA264_19690 at 4546.060 kb on + strand, within CA264_19690 at 4546.064 kb on + strand, within CA264_19690 at 4546.064 kb on + strand, within CA264_19690 at 4546.065 kb on - strand, within CA264_19690 at 4546.065 kb on - strand, within CA264_19690 at 4546.065 kb on - strand, within CA264_19690 at 4546.065 kb on - strand, within CA264_19690 at 4546.130 kb on + strand, within CA264_19690 at 4546.130 kb on + strand, within CA264_19690 at 4546.181 kb on + strand, within CA264_19690 at 4546.228 kb on + strand, within CA264_19690 at 4546.230 kb on + strand, within CA264_19690 at 4546.231 kb on - strand, within CA264_19690 at 4546.234 kb on + strand, within CA264_19690 at 4546.234 kb on + strand, within CA264_19690 at 4546.235 kb on - strand, within CA264_19690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 4,543,940 - CA264_19680 0.37 +0.1 4,544,247 + CA264_19680 0.66 +0.1 4,544,248 - CA264_19680 0.66 -1.7 4,544,367 + CA264_19680 0.78 -0.5 4,544,402 + CA264_19680 0.81 -1.0 4,544,403 - CA264_19680 0.81 +0.6 4,544,404 + CA264_19680 0.81 -0.6 4,544,449 + CA264_19680 0.86 +0.4 4,544,580 + -1.3 4,544,581 - +0.1 4,544,600 + -0.2 4,544,601 - -0.5 4,544,601 - +1.2 4,544,621 + -1.1 4,544,884 + CA264_19685 0.41 -1.3 4,545,200 + CA264_19685 0.87 -1.8 4,545,227 - -0.4 4,545,259 + -0.3 4,545,273 - -0.2 4,545,326 + -1.0 4,545,359 + -1.8 4,545,384 + -0.8 4,545,392 - +0.0 4,545,421 + +0.1 4,545,424 + -1.0 4,545,426 + +0.1 4,545,426 + +0.1 4,545,426 + +0.1 4,545,426 + +0.1 4,545,427 - -0.2 4,545,427 - +0.1 4,545,431 + -0.2 4,545,477 + -0.5 4,545,478 - +0.5 4,545,577 + -1.3 4,545,578 - +1.0 4,545,807 - CA264_19690 0.33 +1.0 4,545,848 - CA264_19690 0.38 -0.6 4,545,852 + CA264_19690 0.39 +0.1 4,545,909 - CA264_19690 0.46 +1.2 4,545,909 - CA264_19690 0.46 +0.1 4,545,957 - CA264_19690 0.52 +0.1 4,545,957 - CA264_19690 0.52 +0.4 4,545,976 - CA264_19690 0.54 +0.4 4,546,008 + CA264_19690 0.58 -0.2 4,546,008 + CA264_19690 0.58 -0.5 4,546,022 + CA264_19690 0.60 +0.1 4,546,023 - CA264_19690 0.60 -1.2 4,546,060 + CA264_19690 0.64 -0.3 4,546,064 + CA264_19690 0.65 +0.3 4,546,064 + CA264_19690 0.65 +0.6 4,546,065 - CA264_19690 0.65 -0.1 4,546,065 - CA264_19690 0.65 +0.4 4,546,065 - CA264_19690 0.65 -0.4 4,546,065 - CA264_19690 0.65 -0.3 4,546,130 + CA264_19690 0.73 -0.4 4,546,130 + CA264_19690 0.73 -1.4 4,546,181 + CA264_19690 0.79 -0.8 4,546,228 + CA264_19690 0.85 +1.0 4,546,230 + CA264_19690 0.85 +0.4 4,546,231 - CA264_19690 0.85 -0.8 4,546,234 + CA264_19690 0.86 -0.9 4,546,234 + CA264_19690 0.86 +1.2 4,546,235 - CA264_19690 0.86 -0.1
Or see this region's nucleotide sequence