Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18275 and CA264_18280 are separated by 31 nucleotides CA264_18280 and CA264_18285 are separated by 244 nucleotides CA264_18285 and CA264_18290 are separated by 236 nucleotides
CA264_18275: CA264_18275 - hypothetical protein, at 4,250,086 to 4,250,415
_18275
CA264_18280: CA264_18280 - hypothetical protein, at 4,250,447 to 4,250,818
_18280
CA264_18285: CA264_18285 - hypothetical protein, at 4,251,063 to 4,252,559
_18285
CA264_18290: CA264_18290 - NADH dehydrogenase subunit D, at 4,252,796 to 4,254,007
_18290
Position (kb) 4251
4252
4253 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4250.079 kb on + strand at 4250.151 kb on + strand, within CA264_18275 at 4250.151 kb on + strand, within CA264_18275 at 4250.151 kb on + strand, within CA264_18275 at 4250.151 kb on + strand, within CA264_18275 at 4250.152 kb on - strand, within CA264_18275 at 4250.228 kb on - strand, within CA264_18275 at 4250.379 kb on + strand, within CA264_18275 at 4250.379 kb on + strand, within CA264_18275 at 4250.379 kb on + strand, within CA264_18275 at 4250.405 kb on - strand at 4250.434 kb on + strand at 4250.436 kb on + strand at 4250.437 kb on - strand at 4250.437 kb on - strand at 4250.448 kb on + strand at 4250.455 kb on - strand at 4250.455 kb on - strand at 4250.455 kb on - strand at 4250.458 kb on + strand at 4250.458 kb on + strand at 4250.476 kb on + strand at 4250.476 kb on + strand at 4250.477 kb on - strand at 4250.479 kb on + strand at 4250.479 kb on + strand at 4250.480 kb on - strand at 4250.491 kb on - strand, within CA264_18280 at 4250.491 kb on - strand, within CA264_18280 at 4250.491 kb on - strand, within CA264_18280 at 4250.538 kb on - strand, within CA264_18280 at 4250.538 kb on - strand, within CA264_18280 at 4250.541 kb on + strand, within CA264_18280 at 4250.542 kb on - strand, within CA264_18280 at 4250.542 kb on - strand, within CA264_18280 at 4250.560 kb on + strand, within CA264_18280 at 4250.561 kb on - strand, within CA264_18280 at 4250.561 kb on - strand, within CA264_18280 at 4250.561 kb on - strand, within CA264_18280 at 4250.567 kb on + strand, within CA264_18280 at 4250.568 kb on - strand, within CA264_18280 at 4250.572 kb on + strand, within CA264_18280 at 4250.573 kb on - strand, within CA264_18280 at 4250.607 kb on - strand, within CA264_18280 at 4250.634 kb on + strand, within CA264_18280 at 4250.646 kb on - strand, within CA264_18280 at 4250.646 kb on - strand, within CA264_18280 at 4250.648 kb on + strand, within CA264_18280 at 4250.649 kb on - strand, within CA264_18280 at 4250.659 kb on + strand, within CA264_18280 at 4250.660 kb on - strand, within CA264_18280 at 4250.693 kb on + strand, within CA264_18280 at 4250.694 kb on - strand, within CA264_18280 at 4250.800 kb on + strand at 4250.801 kb on - strand at 4250.801 kb on - strand at 4250.810 kb on + strand at 4250.810 kb on + strand at 4250.810 kb on + strand at 4250.811 kb on - strand at 4250.811 kb on - strand at 4250.811 kb on - strand at 4250.811 kb on - strand at 4250.819 kb on + strand at 4250.849 kb on + strand at 4250.882 kb on + strand at 4250.889 kb on + strand at 4250.889 kb on + strand at 4250.901 kb on + strand at 4250.902 kb on - strand at 4250.940 kb on + strand at 4250.941 kb on - strand at 4251.037 kb on + strand at 4251.038 kb on - strand at 4251.038 kb on - strand at 4251.082 kb on - strand at 4251.101 kb on - strand at 4251.120 kb on + strand at 4251.130 kb on + strand at 4251.130 kb on + strand at 4251.130 kb on + strand at 4251.130 kb on + strand at 4251.131 kb on - strand at 4251.131 kb on - strand at 4251.131 kb on - strand at 4251.131 kb on - strand at 4251.131 kb on - strand at 4251.232 kb on - strand, within CA264_18285 at 4251.261 kb on + strand, within CA264_18285 at 4251.284 kb on - strand, within CA264_18285 at 4251.290 kb on - strand, within CA264_18285 at 4251.294 kb on - strand, within CA264_18285 at 4251.312 kb on - strand, within CA264_18285 at 4251.326 kb on + strand, within CA264_18285 at 4251.334 kb on + strand, within CA264_18285 at 4251.341 kb on - strand, within CA264_18285 at 4251.341 kb on - strand, within CA264_18285 at 4251.344 kb on - strand, within CA264_18285 at 4251.348 kb on - strand, within CA264_18285 at 4251.348 kb on - strand, within CA264_18285 at 4251.370 kb on - strand, within CA264_18285 at 4251.377 kb on + strand, within CA264_18285 at 4251.390 kb on - strand, within CA264_18285 at 4251.404 kb on + strand, within CA264_18285 at 4251.438 kb on + strand, within CA264_18285 at 4251.446 kb on + strand, within CA264_18285 at 4251.450 kb on + strand, within CA264_18285 at 4251.450 kb on + strand, within CA264_18285 at 4251.450 kb on + strand, within CA264_18285 at 4251.451 kb on - strand, within CA264_18285 at 4251.451 kb on - strand, within CA264_18285 at 4251.453 kb on - strand, within CA264_18285 at 4251.539 kb on + strand, within CA264_18285 at 4251.541 kb on + strand, within CA264_18285 at 4251.554 kb on + strand, within CA264_18285 at 4251.555 kb on - strand, within CA264_18285 at 4251.557 kb on + strand, within CA264_18285 at 4251.565 kb on + strand, within CA264_18285 at 4251.573 kb on + strand, within CA264_18285 at 4251.574 kb on - strand, within CA264_18285 at 4251.598 kb on - strand, within CA264_18285 at 4251.598 kb on - strand, within CA264_18285 at 4251.618 kb on + strand, within CA264_18285 at 4251.618 kb on + strand, within CA264_18285 at 4251.649 kb on - strand, within CA264_18285 at 4251.663 kb on - strand, within CA264_18285 at 4251.726 kb on - strand, within CA264_18285 at 4251.744 kb on - strand, within CA264_18285 at 4251.760 kb on - strand, within CA264_18285 at 4251.798 kb on + strand, within CA264_18285 at 4251.798 kb on + strand, within CA264_18285 at 4251.799 kb on - strand, within CA264_18285 at 4251.819 kb on + strand, within CA264_18285 at 4251.820 kb on - strand, within CA264_18285 at 4251.839 kb on + strand, within CA264_18285 at 4251.855 kb on + strand, within CA264_18285 at 4251.865 kb on - strand, within CA264_18285 at 4251.991 kb on + strand, within CA264_18285 at 4251.992 kb on - strand, within CA264_18285 at 4252.032 kb on - strand, within CA264_18285 at 4252.113 kb on + strand, within CA264_18285 at 4252.148 kb on + strand, within CA264_18285 at 4252.157 kb on - strand, within CA264_18285 at 4252.157 kb on - strand, within CA264_18285 at 4252.157 kb on - strand, within CA264_18285 at 4252.162 kb on - strand, within CA264_18285 at 4252.172 kb on + strand, within CA264_18285 at 4252.194 kb on + strand, within CA264_18285 at 4252.208 kb on + strand, within CA264_18285 at 4252.239 kb on + strand, within CA264_18285 at 4252.273 kb on - strand, within CA264_18285 at 4252.280 kb on - strand, within CA264_18285 at 4252.280 kb on - strand, within CA264_18285 at 4252.289 kb on + strand, within CA264_18285 at 4252.311 kb on - strand, within CA264_18285 at 4252.311 kb on - strand, within CA264_18285 at 4252.343 kb on + strand, within CA264_18285 at 4252.431 kb on + strand at 4252.432 kb on - strand at 4252.442 kb on - strand at 4252.601 kb on - strand at 4252.626 kb on - strand at 4252.660 kb on + strand at 4252.662 kb on + strand at 4252.722 kb on + strand at 4252.772 kb on + strand at 4252.960 kb on - strand, within CA264_18290 at 4253.021 kb on - strand, within CA264_18290 at 4253.049 kb on + strand, within CA264_18290 at 4253.049 kb on + strand, within CA264_18290 at 4253.157 kb on + strand, within CA264_18290 at 4253.157 kb on + strand, within CA264_18290 at 4253.158 kb on - strand, within CA264_18290 at 4253.158 kb on - strand, within CA264_18290 at 4253.158 kb on - strand, within CA264_18290 at 4253.275 kb on + strand, within CA264_18290 at 4253.277 kb on + strand, within CA264_18290 at 4253.319 kb on - strand, within CA264_18290 at 4253.325 kb on - strand, within CA264_18290 at 4253.345 kb on + strand, within CA264_18290 at 4253.349 kb on - strand, within CA264_18290 at 4253.391 kb on + strand, within CA264_18290 at 4253.396 kb on + strand, within CA264_18290 at 4253.396 kb on + strand, within CA264_18290 at 4253.448 kb on + strand, within CA264_18290 at 4253.453 kb on - strand, within CA264_18290 at 4253.505 kb on - strand, within CA264_18290 at 4253.541 kb on + strand, within CA264_18290 at 4253.542 kb on - strand, within CA264_18290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 4,250,079 + -0.1 4,250,151 + CA264_18275 0.20 +0.3 4,250,151 + CA264_18275 0.20 -0.1 4,250,151 + CA264_18275 0.20 -1.4 4,250,151 + CA264_18275 0.20 -0.8 4,250,152 - CA264_18275 0.20 -0.8 4,250,228 - CA264_18275 0.43 +0.2 4,250,379 + CA264_18275 0.89 +0.5 4,250,379 + CA264_18275 0.89 +0.4 4,250,379 + CA264_18275 0.89 +0.3 4,250,405 - +0.5 4,250,434 + +1.3 4,250,436 + +0.1 4,250,437 - +0.3 4,250,437 - -0.5 4,250,448 + -0.2 4,250,455 - +0.1 4,250,455 - +0.2 4,250,455 - -0.1 4,250,458 + +1.8 4,250,458 + +0.9 4,250,476 + +0.1 4,250,476 + -0.3 4,250,477 - +0.1 4,250,479 + -1.0 4,250,479 + +0.4 4,250,480 - -0.4 4,250,491 - CA264_18280 0.12 +0.6 4,250,491 - CA264_18280 0.12 -0.0 4,250,491 - CA264_18280 0.12 -0.5 4,250,538 - CA264_18280 0.24 +0.6 4,250,538 - CA264_18280 0.24 -0.3 4,250,541 + CA264_18280 0.25 -0.7 4,250,542 - CA264_18280 0.26 -0.1 4,250,542 - CA264_18280 0.26 +1.4 4,250,560 + CA264_18280 0.30 -1.5 4,250,561 - CA264_18280 0.31 -0.9 4,250,561 - CA264_18280 0.31 -0.0 4,250,561 - CA264_18280 0.31 -0.4 4,250,567 + CA264_18280 0.32 +0.3 4,250,568 - CA264_18280 0.33 -0.3 4,250,572 + CA264_18280 0.34 +0.2 4,250,573 - CA264_18280 0.34 -0.5 4,250,607 - CA264_18280 0.43 +0.1 4,250,634 + CA264_18280 0.50 +1.4 4,250,646 - CA264_18280 0.53 -0.7 4,250,646 - CA264_18280 0.53 -0.2 4,250,648 + CA264_18280 0.54 +0.1 4,250,649 - CA264_18280 0.54 -0.5 4,250,659 + CA264_18280 0.57 -0.4 4,250,660 - CA264_18280 0.57 +1.5 4,250,693 + CA264_18280 0.66 -0.1 4,250,694 - CA264_18280 0.66 -0.7 4,250,800 + +0.4 4,250,801 - +1.9 4,250,801 - -0.2 4,250,810 + +1.4 4,250,810 + -0.5 4,250,810 + -0.1 4,250,811 - +0.1 4,250,811 - +0.6 4,250,811 - -0.3 4,250,811 - +0.4 4,250,819 + -0.2 4,250,849 + +0.1 4,250,882 + -1.2 4,250,889 + -0.2 4,250,889 + -0.3 4,250,901 + +0.6 4,250,902 - -0.2 4,250,940 + +0.2 4,250,941 - +0.6 4,251,037 + -0.9 4,251,038 - -1.0 4,251,038 - +0.6 4,251,082 - +0.3 4,251,101 - -0.7 4,251,120 + +0.2 4,251,130 + +0.4 4,251,130 + +0.2 4,251,130 + -0.3 4,251,130 + -0.4 4,251,131 - -0.2 4,251,131 - +0.3 4,251,131 - +1.7 4,251,131 - -1.7 4,251,131 - -0.4 4,251,232 - CA264_18285 0.11 +0.5 4,251,261 + CA264_18285 0.13 -1.1 4,251,284 - CA264_18285 0.15 -0.0 4,251,290 - CA264_18285 0.15 +0.0 4,251,294 - CA264_18285 0.15 -0.5 4,251,312 - CA264_18285 0.17 +1.2 4,251,326 + CA264_18285 0.18 +0.7 4,251,334 + CA264_18285 0.18 -1.7 4,251,341 - CA264_18285 0.19 +0.0 4,251,341 - CA264_18285 0.19 +0.9 4,251,344 - CA264_18285 0.19 +0.2 4,251,348 - CA264_18285 0.19 +0.1 4,251,348 - CA264_18285 0.19 -0.3 4,251,370 - CA264_18285 0.21 +0.3 4,251,377 + CA264_18285 0.21 +0.2 4,251,390 - CA264_18285 0.22 -0.8 4,251,404 + CA264_18285 0.23 -0.4 4,251,438 + CA264_18285 0.25 +0.2 4,251,446 + CA264_18285 0.26 +0.4 4,251,450 + CA264_18285 0.26 -0.3 4,251,450 + CA264_18285 0.26 +0.4 4,251,450 + CA264_18285 0.26 +0.0 4,251,451 - CA264_18285 0.26 -1.4 4,251,451 - CA264_18285 0.26 +0.8 4,251,453 - CA264_18285 0.26 -0.9 4,251,539 + CA264_18285 0.32 +0.0 4,251,541 + CA264_18285 0.32 -0.0 4,251,554 + CA264_18285 0.33 -0.7 4,251,555 - CA264_18285 0.33 +0.1 4,251,557 + CA264_18285 0.33 -0.1 4,251,565 + CA264_18285 0.34 -0.7 4,251,573 + CA264_18285 0.34 -0.6 4,251,574 - CA264_18285 0.34 -0.1 4,251,598 - CA264_18285 0.36 -0.0 4,251,598 - CA264_18285 0.36 +0.2 4,251,618 + CA264_18285 0.37 -0.5 4,251,618 + CA264_18285 0.37 -0.1 4,251,649 - CA264_18285 0.39 -0.0 4,251,663 - CA264_18285 0.40 +0.1 4,251,726 - CA264_18285 0.44 +0.4 4,251,744 - CA264_18285 0.45 +0.1 4,251,760 - CA264_18285 0.47 +0.0 4,251,798 + CA264_18285 0.49 +0.6 4,251,798 + CA264_18285 0.49 +0.8 4,251,799 - CA264_18285 0.49 -1.0 4,251,819 + CA264_18285 0.51 -0.0 4,251,820 - CA264_18285 0.51 -0.8 4,251,839 + CA264_18285 0.52 -0.2 4,251,855 + CA264_18285 0.53 +0.8 4,251,865 - CA264_18285 0.54 +1.8 4,251,991 + CA264_18285 0.62 +0.1 4,251,992 - CA264_18285 0.62 -0.2 4,252,032 - CA264_18285 0.65 +0.4 4,252,113 + CA264_18285 0.70 -0.8 4,252,148 + CA264_18285 0.72 -0.5 4,252,157 - CA264_18285 0.73 -0.5 4,252,157 - CA264_18285 0.73 +1.2 4,252,157 - CA264_18285 0.73 -0.0 4,252,162 - CA264_18285 0.73 +0.0 4,252,172 + CA264_18285 0.74 +0.1 4,252,194 + CA264_18285 0.76 -0.3 4,252,208 + CA264_18285 0.76 -0.5 4,252,239 + CA264_18285 0.79 +1.2 4,252,273 - CA264_18285 0.81 -0.0 4,252,280 - CA264_18285 0.81 -0.5 4,252,280 - CA264_18285 0.81 +0.0 4,252,289 + CA264_18285 0.82 -0.7 4,252,311 - CA264_18285 0.83 -0.2 4,252,311 - CA264_18285 0.83 -0.1 4,252,343 + CA264_18285 0.86 +0.0 4,252,431 + -1.0 4,252,432 - +0.0 4,252,442 - +1.0 4,252,601 - -1.5 4,252,626 - -6.1 4,252,660 + +1.0 4,252,662 + -0.2 4,252,722 + +1.1 4,252,772 + +0.1 4,252,960 - CA264_18290 0.14 -0.4 4,253,021 - CA264_18290 0.19 -0.9 4,253,049 + CA264_18290 0.21 -0.4 4,253,049 + CA264_18290 0.21 -0.7 4,253,157 + CA264_18290 0.30 -0.4 4,253,157 + CA264_18290 0.30 -1.1 4,253,158 - CA264_18290 0.30 -0.8 4,253,158 - CA264_18290 0.30 -1.0 4,253,158 - CA264_18290 0.30 +0.3 4,253,275 + CA264_18290 0.40 -0.2 4,253,277 + CA264_18290 0.40 -0.8 4,253,319 - CA264_18290 0.43 -2.6 4,253,325 - CA264_18290 0.44 -2.0 4,253,345 + CA264_18290 0.45 -1.8 4,253,349 - CA264_18290 0.46 -0.2 4,253,391 + CA264_18290 0.49 -0.7 4,253,396 + CA264_18290 0.50 -0.5 4,253,396 + CA264_18290 0.50 -1.0 4,253,448 + CA264_18290 0.54 -0.7 4,253,453 - CA264_18290 0.54 -1.8 4,253,505 - CA264_18290 0.58 -2.2 4,253,541 + CA264_18290 0.61 -1.0 4,253,542 - CA264_18290 0.62 +1.1
Or see this region's nucleotide sequence