Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14800 and CA264_14805 are separated by 223 nucleotides CA264_14805 and CA264_14810 are separated by 69 nucleotides
CA264_14800: CA264_14800 - hypothetical protein, at 3,476,575 to 3,477,663
_14800
CA264_14805: CA264_14805 - DNA-binding protein, at 3,477,887 to 3,478,114
_14805
CA264_14810: CA264_14810 - hypothetical protein, at 3,478,184 to 3,478,888
_14810
Position (kb)
3477
3478
3479 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3476.892 kb on - strand, within CA264_14800 at 3476.905 kb on + strand, within CA264_14800 at 3476.906 kb on - strand, within CA264_14800 at 3476.911 kb on + strand, within CA264_14800 at 3476.942 kb on + strand, within CA264_14800 at 3477.000 kb on + strand, within CA264_14800 at 3477.001 kb on - strand, within CA264_14800 at 3477.013 kb on + strand, within CA264_14800 at 3477.014 kb on - strand, within CA264_14800 at 3477.050 kb on + strand, within CA264_14800 at 3477.050 kb on + strand, within CA264_14800 at 3477.063 kb on + strand, within CA264_14800 at 3477.064 kb on - strand, within CA264_14800 at 3477.125 kb on - strand, within CA264_14800 at 3477.125 kb on - strand, within CA264_14800 at 3477.128 kb on + strand, within CA264_14800 at 3477.153 kb on - strand, within CA264_14800 at 3477.173 kb on + strand, within CA264_14800 at 3477.174 kb on - strand, within CA264_14800 at 3477.260 kb on + strand, within CA264_14800 at 3477.292 kb on - strand, within CA264_14800 at 3477.297 kb on + strand, within CA264_14800 at 3477.298 kb on - strand, within CA264_14800 at 3477.298 kb on - strand, within CA264_14800 at 3477.299 kb on + strand, within CA264_14800 at 3477.300 kb on - strand, within CA264_14800 at 3477.333 kb on - strand, within CA264_14800 at 3477.381 kb on - strand, within CA264_14800 at 3477.410 kb on + strand, within CA264_14800 at 3477.410 kb on + strand, within CA264_14800 at 3477.411 kb on - strand, within CA264_14800 at 3477.422 kb on + strand, within CA264_14800 at 3477.423 kb on - strand, within CA264_14800 at 3477.448 kb on + strand, within CA264_14800 at 3477.449 kb on - strand, within CA264_14800 at 3477.481 kb on + strand, within CA264_14800 at 3477.490 kb on + strand, within CA264_14800 at 3477.491 kb on - strand, within CA264_14800 at 3477.524 kb on + strand, within CA264_14800 at 3477.563 kb on + strand at 3477.582 kb on + strand at 3477.583 kb on - strand at 3477.583 kb on - strand at 3477.594 kb on + strand at 3477.594 kb on + strand at 3477.594 kb on + strand at 3477.594 kb on + strand at 3477.594 kb on + strand at 3477.595 kb on - strand at 3477.595 kb on - strand at 3477.595 kb on - strand at 3477.599 kb on - strand at 3477.599 kb on - strand at 3477.599 kb on - strand at 3477.814 kb on - strand at 3477.907 kb on - strand at 3477.952 kb on - strand, within CA264_14805 at 3477.952 kb on - strand, within CA264_14805 at 3477.957 kb on - strand, within CA264_14805 at 3478.039 kb on - strand, within CA264_14805 at 3478.136 kb on - strand at 3478.145 kb on - strand at 3478.150 kb on - strand at 3478.156 kb on - strand at 3478.191 kb on + strand at 3478.191 kb on + strand at 3478.192 kb on - strand at 3478.195 kb on + strand at 3478.196 kb on - strand at 3478.211 kb on + strand at 3478.232 kb on + strand at 3478.282 kb on + strand, within CA264_14810 at 3478.282 kb on + strand, within CA264_14810 at 3478.282 kb on + strand, within CA264_14810 at 3478.286 kb on - strand, within CA264_14810 at 3478.300 kb on + strand, within CA264_14810 at 3478.301 kb on - strand, within CA264_14810 at 3478.306 kb on + strand, within CA264_14810 at 3478.307 kb on - strand, within CA264_14810 at 3478.318 kb on + strand, within CA264_14810 at 3478.318 kb on + strand, within CA264_14810 at 3478.319 kb on - strand, within CA264_14810 at 3478.320 kb on + strand, within CA264_14810 at 3478.321 kb on - strand, within CA264_14810 at 3478.336 kb on - strand, within CA264_14810 at 3478.336 kb on - strand, within CA264_14810 at 3478.354 kb on + strand, within CA264_14810 at 3478.362 kb on + strand, within CA264_14810 at 3478.363 kb on - strand, within CA264_14810 at 3478.397 kb on - strand, within CA264_14810 at 3478.397 kb on - strand, within CA264_14810 at 3478.397 kb on - strand, within CA264_14810 at 3478.400 kb on - strand, within CA264_14810 at 3478.479 kb on + strand, within CA264_14810 at 3478.484 kb on + strand, within CA264_14810 at 3478.491 kb on + strand, within CA264_14810 at 3478.492 kb on - strand at 3478.497 kb on + strand, within CA264_14810 at 3478.497 kb on + strand, within CA264_14810 at 3478.497 kb on + strand, within CA264_14810 at 3478.497 kb on + strand, within CA264_14810 at 3478.498 kb on - strand, within CA264_14810 at 3478.501 kb on + strand, within CA264_14810 at 3478.508 kb on + strand, within CA264_14810 at 3478.509 kb on - strand, within CA264_14810 at 3478.509 kb on - strand, within CA264_14810 at 3478.596 kb on + strand, within CA264_14810 at 3478.627 kb on - strand, within CA264_14810 at 3478.629 kb on + strand, within CA264_14810 at 3478.669 kb on + strand, within CA264_14810 at 3478.669 kb on - strand, within CA264_14810 at 3478.670 kb on - strand, within CA264_14810 at 3478.685 kb on + strand, within CA264_14810 at 3478.688 kb on - strand, within CA264_14810 at 3478.701 kb on + strand, within CA264_14810 at 3478.702 kb on - strand, within CA264_14810 at 3478.716 kb on + strand, within CA264_14810 at 3478.717 kb on - strand, within CA264_14810 at 3478.721 kb on - strand, within CA264_14810 at 3478.764 kb on + strand, within CA264_14810 at 3478.772 kb on + strand, within CA264_14810 at 3478.784 kb on + strand, within CA264_14810 at 3478.786 kb on + strand, within CA264_14810 at 3478.786 kb on + strand, within CA264_14810 at 3478.787 kb on - strand, within CA264_14810 at 3478.787 kb on - strand, within CA264_14810 at 3478.846 kb on + strand at 3478.868 kb on + strand at 3478.869 kb on - strand at 3478.871 kb on - strand at 3478.871 kb on - strand at 3478.898 kb on - strand at 3478.898 kb on - strand at 3478.901 kb on + strand at 3478.902 kb on - strand at 3478.903 kb on + strand at 3478.904 kb on - strand at 3478.904 kb on - strand at 3478.904 kb on - strand at 3478.904 kb on - strand at 3478.904 kb on - strand at 3478.904 kb on - strand at 3478.912 kb on - strand at 3478.925 kb on - strand at 3478.969 kb on + strand at 3478.969 kb on + strand at 3478.970 kb on - strand at 3478.974 kb on - strand at 3479.003 kb on + strand at 3479.012 kb on - strand at 3479.039 kb on + strand at 3479.063 kb on - strand at 3479.068 kb on + strand at 3479.088 kb on - strand at 3479.088 kb on - strand at 3479.088 kb on - strand at 3479.089 kb on + strand at 3479.089 kb on + strand at 3479.089 kb on + strand at 3479.090 kb on - strand at 3479.090 kb on - strand at 3479.101 kb on + strand at 3479.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 3,476,892 - CA264_14800 0.29 -0.9 3,476,905 + CA264_14800 0.30 -0.2 3,476,906 - CA264_14800 0.30 +0.4 3,476,911 + CA264_14800 0.31 -0.5 3,476,942 + CA264_14800 0.34 -0.1 3,477,000 + CA264_14800 0.39 +0.3 3,477,001 - CA264_14800 0.39 -0.2 3,477,013 + CA264_14800 0.40 -0.3 3,477,014 - CA264_14800 0.40 -0.7 3,477,050 + CA264_14800 0.44 -0.0 3,477,050 + CA264_14800 0.44 -0.6 3,477,063 + CA264_14800 0.45 -0.2 3,477,064 - CA264_14800 0.45 -0.2 3,477,125 - CA264_14800 0.51 -0.2 3,477,125 - CA264_14800 0.51 -0.1 3,477,128 + CA264_14800 0.51 -0.1 3,477,153 - CA264_14800 0.53 +0.0 3,477,173 + CA264_14800 0.55 -0.7 3,477,174 - CA264_14800 0.55 -0.9 3,477,260 + CA264_14800 0.63 -0.5 3,477,292 - CA264_14800 0.66 +0.3 3,477,297 + CA264_14800 0.66 +0.0 3,477,298 - CA264_14800 0.66 +0.2 3,477,298 - CA264_14800 0.66 +0.3 3,477,299 + CA264_14800 0.66 +0.0 3,477,300 - CA264_14800 0.67 -0.1 3,477,333 - CA264_14800 0.70 -0.1 3,477,381 - CA264_14800 0.74 +1.2 3,477,410 + CA264_14800 0.77 +1.7 3,477,410 + CA264_14800 0.77 -0.3 3,477,411 - CA264_14800 0.77 -0.1 3,477,422 + CA264_14800 0.78 +0.8 3,477,423 - CA264_14800 0.78 -0.3 3,477,448 + CA264_14800 0.80 -0.7 3,477,449 - CA264_14800 0.80 -0.3 3,477,481 + CA264_14800 0.83 -0.3 3,477,490 + CA264_14800 0.84 -0.3 3,477,491 - CA264_14800 0.84 -1.0 3,477,524 + CA264_14800 0.87 +0.6 3,477,563 + -0.5 3,477,582 + +0.0 3,477,583 - -0.5 3,477,583 - +1.0 3,477,594 + -0.2 3,477,594 + -0.8 3,477,594 + -0.2 3,477,594 + -1.5 3,477,594 + -2.0 3,477,595 - -1.4 3,477,595 - -0.1 3,477,595 - +0.2 3,477,599 - +1.0 3,477,599 - -0.1 3,477,599 - -0.6 3,477,814 - +0.1 3,477,907 - +0.5 3,477,952 - CA264_14805 0.29 -2.8 3,477,952 - CA264_14805 0.29 -0.6 3,477,957 - CA264_14805 0.31 -0.8 3,478,039 - CA264_14805 0.67 -0.1 3,478,136 - +0.8 3,478,145 - -1.6 3,478,150 - -0.1 3,478,156 - +0.3 3,478,191 + -1.1 3,478,191 + -0.6 3,478,192 - +0.3 3,478,195 + +0.0 3,478,196 - +0.4 3,478,211 + +0.6 3,478,232 + -0.2 3,478,282 + CA264_14810 0.14 -0.3 3,478,282 + CA264_14810 0.14 +0.0 3,478,282 + CA264_14810 0.14 -1.3 3,478,286 - CA264_14810 0.14 -0.9 3,478,300 + CA264_14810 0.16 -0.2 3,478,301 - CA264_14810 0.17 +0.0 3,478,306 + CA264_14810 0.17 +0.6 3,478,307 - CA264_14810 0.17 +0.1 3,478,318 + CA264_14810 0.19 -0.1 3,478,318 + CA264_14810 0.19 +1.1 3,478,319 - CA264_14810 0.19 +0.1 3,478,320 + CA264_14810 0.19 -0.3 3,478,321 - CA264_14810 0.19 +0.8 3,478,336 - CA264_14810 0.22 +0.5 3,478,336 - CA264_14810 0.22 -0.3 3,478,354 + CA264_14810 0.24 +0.1 3,478,362 + CA264_14810 0.25 +0.1 3,478,363 - CA264_14810 0.25 +0.0 3,478,397 - CA264_14810 0.30 +0.4 3,478,397 - CA264_14810 0.30 -0.4 3,478,397 - CA264_14810 0.30 +0.8 3,478,400 - CA264_14810 0.31 -0.3 3,478,479 + CA264_14810 0.42 -0.0 3,478,484 + CA264_14810 0.43 +0.3 3,478,491 + CA264_14810 0.44 +0.9 3,478,492 - +3.4 3,478,497 + CA264_14810 0.44 +0.8 3,478,497 + CA264_14810 0.44 -0.1 3,478,497 + CA264_14810 0.44 -0.4 3,478,497 + CA264_14810 0.44 +1.1 3,478,498 - CA264_14810 0.45 +0.2 3,478,501 + CA264_14810 0.45 -0.5 3,478,508 + CA264_14810 0.46 +0.1 3,478,509 - CA264_14810 0.46 -1.4 3,478,509 - CA264_14810 0.46 +0.0 3,478,596 + CA264_14810 0.58 +0.4 3,478,627 - CA264_14810 0.63 -0.2 3,478,629 + CA264_14810 0.63 -0.2 3,478,669 + CA264_14810 0.69 +0.0 3,478,669 - CA264_14810 0.69 -0.3 3,478,670 - CA264_14810 0.69 +0.2 3,478,685 + CA264_14810 0.71 +0.2 3,478,688 - CA264_14810 0.71 -0.9 3,478,701 + CA264_14810 0.73 -0.6 3,478,702 - CA264_14810 0.73 -1.7 3,478,716 + CA264_14810 0.75 -0.3 3,478,717 - CA264_14810 0.76 +0.6 3,478,721 - CA264_14810 0.76 -0.9 3,478,764 + CA264_14810 0.82 -0.2 3,478,772 + CA264_14810 0.83 -1.2 3,478,784 + CA264_14810 0.85 +0.7 3,478,786 + CA264_14810 0.85 +1.2 3,478,786 + CA264_14810 0.85 +0.1 3,478,787 - CA264_14810 0.86 -0.4 3,478,787 - CA264_14810 0.86 +0.1 3,478,846 + +1.0 3,478,868 + +0.1 3,478,869 - -0.6 3,478,871 - -0.3 3,478,871 - +0.7 3,478,898 - +0.1 3,478,898 - -0.1 3,478,901 + +0.5 3,478,902 - +0.1 3,478,903 + -0.2 3,478,904 - +0.3 3,478,904 - -0.7 3,478,904 - -0.0 3,478,904 - -0.1 3,478,904 - +0.8 3,478,904 - -0.9 3,478,912 - +1.1 3,478,925 - +0.2 3,478,969 + -0.3 3,478,969 + -0.5 3,478,970 - -0.8 3,478,974 - -0.4 3,479,003 + +0.1 3,479,012 - +0.2 3,479,039 + -0.2 3,479,063 - -0.3 3,479,068 + -2.0 3,479,088 - +0.4 3,479,088 - -0.2 3,479,088 - -0.9 3,479,089 + -0.4 3,479,089 + -1.1 3,479,089 + -0.1 3,479,090 - -0.3 3,479,090 - -0.3 3,479,101 + -0.1 3,479,102 - -0.1
Or see this region's nucleotide sequence