Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11845

Experiment: m.b. Ceftazidime 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11840 and CA264_11845 are separated by 52 nucleotidesCA264_11845 and CA264_11850 are separated by 157 nucleotides CA264_11840: CA264_11840 - membrane-binding protein, at 2,754,016 to 2,755,341 _11840 CA264_11845: CA264_11845 - hypothetical protein, at 2,755,394 to 2,755,873 _11845 CA264_11850: CA264_11850 - short-chain dehydrogenase, at 2,756,031 to 2,757,068 _11850 Position (kb) 2755 2756Strain fitness (log2 ratio) -1 0 1 2at 2754.470 kb on - strand, within CA264_11840at 2754.470 kb on - strand, within CA264_11840at 2754.473 kb on - strand, within CA264_11840at 2754.577 kb on + strand, within CA264_11840at 2754.676 kb on + strand, within CA264_11840at 2754.686 kb on - strand, within CA264_11840at 2754.689 kb on - strand, within CA264_11840at 2754.793 kb on + strand, within CA264_11840at 2754.794 kb on - strand, within CA264_11840at 2754.796 kb on - strand, within CA264_11840at 2754.810 kb on - strand, within CA264_11840at 2754.888 kb on + strand, within CA264_11840at 2754.905 kb on - strand, within CA264_11840at 2754.973 kb on + strand, within CA264_11840at 2754.974 kb on - strand, within CA264_11840at 2755.031 kb on + strand, within CA264_11840at 2755.031 kb on + strand, within CA264_11840at 2755.031 kb on + strand, within CA264_11840at 2755.032 kb on - strand, within CA264_11840at 2755.052 kb on - strand, within CA264_11840at 2755.055 kb on - strand, within CA264_11840at 2755.098 kb on + strand, within CA264_11840at 2755.099 kb on - strand, within CA264_11840at 2755.099 kb on - strand, within CA264_11840at 2755.099 kb on - strand, within CA264_11840at 2755.119 kb on + strand, within CA264_11840at 2755.119 kb on + strand, within CA264_11840at 2755.119 kb on + strand, within CA264_11840at 2755.123 kb on + strand, within CA264_11840at 2755.124 kb on - strand, within CA264_11840at 2755.124 kb on - strand, within CA264_11840at 2755.270 kb on - strandat 2755.339 kb on + strandat 2755.391 kb on + strandat 2755.431 kb on - strandat 2755.471 kb on + strand, within CA264_11845at 2755.582 kb on + strand, within CA264_11845at 2755.583 kb on - strand, within CA264_11845at 2755.621 kb on + strand, within CA264_11845at 2755.621 kb on + strand, within CA264_11845at 2755.623 kb on + strand, within CA264_11845at 2755.685 kb on + strand, within CA264_11845at 2755.686 kb on - strand, within CA264_11845at 2755.738 kb on - strand, within CA264_11845at 2755.841 kb on + strandat 2755.842 kb on - strandat 2755.873 kb on + strandat 2755.911 kb on + strandat 2755.912 kb on - strandat 2755.991 kb on - strandat 2756.014 kb on - strandat 2756.014 kb on - strandat 2756.049 kb on + strandat 2756.050 kb on - strandat 2756.050 kb on - strandat 2756.102 kb on - strandat 2756.102 kb on - strandat 2756.223 kb on + strand, within CA264_11850at 2756.223 kb on + strand, within CA264_11850at 2756.224 kb on - strand, within CA264_11850at 2756.228 kb on - strand, within CA264_11850at 2756.233 kb on + strand, within CA264_11850at 2756.233 kb on + strand, within CA264_11850at 2756.368 kb on - strand, within CA264_11850at 2756.377 kb on + strand, within CA264_11850at 2756.392 kb on - strand, within CA264_11850at 2756.392 kb on - strand, within CA264_11850at 2756.392 kb on - strand, within CA264_11850at 2756.461 kb on + strand, within CA264_11850at 2756.511 kb on + strand, within CA264_11850at 2756.544 kb on + strand, within CA264_11850at 2756.544 kb on + strand, within CA264_11850at 2756.545 kb on - strand, within CA264_11850at 2756.602 kb on + strand, within CA264_11850at 2756.608 kb on + strand, within CA264_11850at 2756.679 kb on - strand, within CA264_11850at 2756.718 kb on + strand, within CA264_11850at 2756.779 kb on + strand, within CA264_11850at 2756.780 kb on - strand, within CA264_11850at 2756.780 kb on - strand, within CA264_11850at 2756.811 kb on + strand, within CA264_11850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
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2,754,470 - CA264_11840 0.34 -0.4
2,754,470 - CA264_11840 0.34 +0.1
2,754,473 - CA264_11840 0.34 +0.3
2,754,577 + CA264_11840 0.42 -0.6
2,754,676 + CA264_11840 0.50 -0.2
2,754,686 - CA264_11840 0.51 +0.6
2,754,689 - CA264_11840 0.51 -0.4
2,754,793 + CA264_11840 0.59 -0.5
2,754,794 - CA264_11840 0.59 +0.9
2,754,796 - CA264_11840 0.59 +0.0
2,754,810 - CA264_11840 0.60 +0.6
2,754,888 + CA264_11840 0.66 -0.8
2,754,905 - CA264_11840 0.67 +0.6
2,754,973 + CA264_11840 0.72 +0.5
2,754,974 - CA264_11840 0.72 +0.4
2,755,031 + CA264_11840 0.77 +0.8
2,755,031 + CA264_11840 0.77 -0.2
2,755,031 + CA264_11840 0.77 +0.1
2,755,032 - CA264_11840 0.77 -0.1
2,755,052 - CA264_11840 0.78 -0.1
2,755,055 - CA264_11840 0.78 +0.3
2,755,098 + CA264_11840 0.82 +0.1
2,755,099 - CA264_11840 0.82 +1.6
2,755,099 - CA264_11840 0.82 -0.3
2,755,099 - CA264_11840 0.82 +0.2
2,755,119 + CA264_11840 0.83 -0.1
2,755,119 + CA264_11840 0.83 -0.7
2,755,119 + CA264_11840 0.83 +0.4
2,755,123 + CA264_11840 0.83 -0.4
2,755,124 - CA264_11840 0.84 +0.8
2,755,124 - CA264_11840 0.84 -0.2
2,755,270 - +0.1
2,755,339 + +0.4
2,755,391 + -1.6
2,755,431 - -0.4
2,755,471 + CA264_11845 0.16 -0.6
2,755,582 + CA264_11845 0.39 -0.7
2,755,583 - CA264_11845 0.39 +0.9
2,755,621 + CA264_11845 0.47 -0.3
2,755,621 + CA264_11845 0.47 +0.3
2,755,623 + CA264_11845 0.48 -0.1
2,755,685 + CA264_11845 0.61 +0.6
2,755,686 - CA264_11845 0.61 +0.3
2,755,738 - CA264_11845 0.72 +0.9
2,755,841 + -0.3
2,755,842 - -0.6
2,755,873 + +0.2
2,755,911 + -0.2
2,755,912 - +0.0
2,755,991 - +2.6
2,756,014 - -1.0
2,756,014 - +0.7
2,756,049 + +0.2
2,756,050 - +0.5
2,756,050 - +0.3
2,756,102 - -0.2
2,756,102 - -0.3
2,756,223 + CA264_11850 0.18 -0.3
2,756,223 + CA264_11850 0.18 +0.8
2,756,224 - CA264_11850 0.19 +0.6
2,756,228 - CA264_11850 0.19 -0.2
2,756,233 + CA264_11850 0.19 -0.4
2,756,233 + CA264_11850 0.19 -0.4
2,756,368 - CA264_11850 0.32 -0.1
2,756,377 + CA264_11850 0.33 +0.5
2,756,392 - CA264_11850 0.35 -0.6
2,756,392 - CA264_11850 0.35 -0.0
2,756,392 - CA264_11850 0.35 -0.0
2,756,461 + CA264_11850 0.41 -1.0
2,756,511 + CA264_11850 0.46 +0.2
2,756,544 + CA264_11850 0.49 +0.0
2,756,544 + CA264_11850 0.49 -0.2
2,756,545 - CA264_11850 0.50 -0.4
2,756,602 + CA264_11850 0.55 +0.1
2,756,608 + CA264_11850 0.56 +0.4
2,756,679 - CA264_11850 0.62 -0.1
2,756,718 + CA264_11850 0.66 +0.4
2,756,779 + CA264_11850 0.72 -1.0
2,756,780 - CA264_11850 0.72 +0.4
2,756,780 - CA264_11850 0.72 -0.3
2,756,811 + CA264_11850 0.75 +0.6

Or see this region's nucleotide sequence