Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09235

Experiment: m.b. Ceftazidime 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_09230 and CA264_09235 are separated by 158 nucleotidesCA264_09235 and CA264_09240 are separated by 3 nucleotides CA264_09230: CA264_09230 - hydroxymethylglutaryl-CoA lyase, at 2,159,859 to 2,160,704 _09230 CA264_09235: CA264_09235 - short-chain dehydrogenase, at 2,160,863 to 2,161,717 _09235 CA264_09240: CA264_09240 - aldehyde dehydrogenase, at 2,161,721 to 2,163,148 _09240 Position (kb) 2160 2161 2162Strain fitness (log2 ratio) -2 -1 0 1at 2159.863 kb on - strandat 2159.925 kb on + strandat 2160.093 kb on - strand, within CA264_09230at 2160.093 kb on - strand, within CA264_09230at 2160.271 kb on + strand, within CA264_09230at 2160.298 kb on + strand, within CA264_09230at 2160.298 kb on + strand, within CA264_09230at 2160.298 kb on + strand, within CA264_09230at 2160.299 kb on - strand, within CA264_09230at 2160.302 kb on + strand, within CA264_09230at 2160.627 kb on - strandat 2160.647 kb on + strandat 2160.651 kb on + strandat 2160.654 kb on - strandat 2160.812 kb on - strandat 2160.819 kb on - strandat 2160.823 kb on + strandat 2160.835 kb on + strandat 2160.835 kb on + strandat 2160.836 kb on - strandat 2160.837 kb on + strandat 2160.845 kb on + strandat 2160.873 kb on + strandat 2160.967 kb on + strand, within CA264_09235at 2160.980 kb on - strand, within CA264_09235at 2161.039 kb on + strand, within CA264_09235at 2161.039 kb on + strand, within CA264_09235at 2161.039 kb on + strand, within CA264_09235at 2161.040 kb on - strand, within CA264_09235at 2161.040 kb on - strand, within CA264_09235at 2161.040 kb on - strand, within CA264_09235at 2161.043 kb on + strand, within CA264_09235at 2161.044 kb on - strand, within CA264_09235at 2161.044 kb on - strand, within CA264_09235at 2161.051 kb on - strand, within CA264_09235at 2161.122 kb on + strand, within CA264_09235at 2161.122 kb on + strand, within CA264_09235at 2161.122 kb on + strand, within CA264_09235at 2161.201 kb on + strand, within CA264_09235at 2161.328 kb on + strand, within CA264_09235at 2161.411 kb on - strand, within CA264_09235at 2161.411 kb on - strand, within CA264_09235at 2161.431 kb on - strand, within CA264_09235at 2161.435 kb on - strand, within CA264_09235at 2161.593 kb on + strand, within CA264_09235at 2161.620 kb on + strand, within CA264_09235at 2161.620 kb on + strand, within CA264_09235at 2161.621 kb on - strand, within CA264_09235at 2161.621 kb on - strand, within CA264_09235at 2161.638 kb on + strandat 2161.639 kb on - strandat 2161.640 kb on + strandat 2161.640 kb on + strandat 2161.640 kb on + strandat 2161.641 kb on - strandat 2161.641 kb on - strandat 2161.716 kb on - strandat 2161.716 kb on - strandat 2161.720 kb on + strandat 2161.721 kb on - strandat 2161.795 kb on - strandat 2161.839 kb on + strandat 2161.839 kb on + strandat 2162.067 kb on - strand, within CA264_09240at 2162.074 kb on + strand, within CA264_09240at 2162.084 kb on + strand, within CA264_09240at 2162.098 kb on + strand, within CA264_09240at 2162.099 kb on - strand, within CA264_09240at 2162.101 kb on + strand, within CA264_09240at 2162.102 kb on - strand, within CA264_09240at 2162.102 kb on - strand, within CA264_09240at 2162.103 kb on + strand, within CA264_09240at 2162.103 kb on + strand, within CA264_09240at 2162.104 kb on - strand, within CA264_09240at 2162.104 kb on - strand, within CA264_09240at 2162.256 kb on - strand, within CA264_09240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
remove
2,159,863 - +0.8
2,159,925 + +0.1
2,160,093 - CA264_09230 0.28 -0.2
2,160,093 - CA264_09230 0.28 -0.8
2,160,271 + CA264_09230 0.49 -0.1
2,160,298 + CA264_09230 0.52 +0.5
2,160,298 + CA264_09230 0.52 -0.8
2,160,298 + CA264_09230 0.52 -0.4
2,160,299 - CA264_09230 0.52 +1.3
2,160,302 + CA264_09230 0.52 -0.2
2,160,627 - -0.2
2,160,647 + -1.3
2,160,651 + +0.8
2,160,654 - -1.2
2,160,812 - +1.0
2,160,819 - -1.6
2,160,823 + +0.2
2,160,835 + -0.7
2,160,835 + +0.3
2,160,836 - -0.1
2,160,837 + -0.1
2,160,845 + +0.5
2,160,873 + -0.1
2,160,967 + CA264_09235 0.12 -1.5
2,160,980 - CA264_09235 0.14 -0.2
2,161,039 + CA264_09235 0.21 +0.2
2,161,039 + CA264_09235 0.21 +1.3
2,161,039 + CA264_09235 0.21 -1.2
2,161,040 - CA264_09235 0.21 +0.6
2,161,040 - CA264_09235 0.21 -0.2
2,161,040 - CA264_09235 0.21 +0.0
2,161,043 + CA264_09235 0.21 -1.5
2,161,044 - CA264_09235 0.21 -0.2
2,161,044 - CA264_09235 0.21 +0.1
2,161,051 - CA264_09235 0.22 -0.4
2,161,122 + CA264_09235 0.30 -0.5
2,161,122 + CA264_09235 0.30 -1.8
2,161,122 + CA264_09235 0.30 -0.7
2,161,201 + CA264_09235 0.40 -0.1
2,161,328 + CA264_09235 0.54 -0.4
2,161,411 - CA264_09235 0.64 -0.6
2,161,411 - CA264_09235 0.64 -0.3
2,161,431 - CA264_09235 0.66 -0.4
2,161,435 - CA264_09235 0.67 +0.8
2,161,593 + CA264_09235 0.85 -0.2
2,161,620 + CA264_09235 0.89 -0.5
2,161,620 + CA264_09235 0.89 -0.3
2,161,621 - CA264_09235 0.89 -0.4
2,161,621 - CA264_09235 0.89 +0.5
2,161,638 + -0.6
2,161,639 - -0.5
2,161,640 + -2.0
2,161,640 + -0.6
2,161,640 + -0.2
2,161,641 - -0.5
2,161,641 - +0.9
2,161,716 - -0.2
2,161,716 - +0.1
2,161,720 + -0.3
2,161,721 - -0.1
2,161,795 - +0.3
2,161,839 + -0.0
2,161,839 + -0.1
2,162,067 - CA264_09240 0.24 +0.2
2,162,074 + CA264_09240 0.25 -0.9
2,162,084 + CA264_09240 0.25 -1.0
2,162,098 + CA264_09240 0.26 -0.3
2,162,099 - CA264_09240 0.26 +0.1
2,162,101 + CA264_09240 0.27 -0.4
2,162,102 - CA264_09240 0.27 -0.1
2,162,102 - CA264_09240 0.27 +0.2
2,162,103 + CA264_09240 0.27 -1.2
2,162,103 + CA264_09240 0.27 -0.6
2,162,104 - CA264_09240 0.27 +0.7
2,162,104 - CA264_09240 0.27 -0.6
2,162,256 - CA264_09240 0.37 +0.2

Or see this region's nucleotide sequence